RchiOBHm_Chr5g0032391

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001579
Physical Location & Seq
Reverse (-)
26025830 .. 26027930
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31157

Sequence Viewer

Length: 1050 bp
ATGGCTAGCTACAGCTCCTCTTTTGATCCGAAATCAGATTCATTGGAGGCTGGAAATGTCGAGGATTTTAAGGTTCATGTGTTCAGATCATCATCTGAGTTGCTTGAAAAGCTTCATGAGAAGTGGAGCAAAGCAGGAGAGAAACCATACCCAGCCATGTATTCCAGCACTTATGGTGGAATCATTCTTGATCCAGCTTTGATGGTGATTCCAATAGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCCATTCTCTTAAATGGATACCTGTATGAGCTGGATGTCCATCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCCCCTCTCCCTTTGATCGGTCAACTCTTCGGAGCATTCTTGTGCAGCTGGCGGCAGCATCACAGATCAAGAAAGGAACTCTACGATATTGGATGAGTGCCGGTCCTGGTGATTTTTTGCTCCAACCTACAGGGTGCCCAACATCTGCATTCTATGCAGTAGTCATTGATGAGGACTTCAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCCTCTATTCCCATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCCAAATGTGAATGTAGCTTTTATAACACATGACAAGGAGCTTATTGTACCCTTCTTTGACAAGATCCTCAGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTTGAATCGGGGCGTCTGAAAGGTGTGACAACTAGAAACATTAGTGTGGAAGAAGCCAAAAGCTCAGCAGAGATGATGTTTGTAGGAAGCACACTGCCGCTGTTGCCAATTATCGCGTGGGACGAACAGCCCGTTGGCGATGGGAAGGTGGGAGAATTGACAATGGCACTCTCCGATCTGGTGTGGGATGATATGGTAGCAGGATCTACTGAAACACAGAGGACGGCAGTTCCCTACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

349

Amino Acids

38.41

Weight (kDa)

5.28

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 82 - 308 8.7e-40 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 471
AccII CGCG 1 cut(s) 923
AciI CCGC 3 cut(s) 307, 389, 905
AclWI GGATC 6 cut(s) 20, 185, 331, 344, 751, 1018
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 1 cut(s) 820
AfaI GTAC 2 cut(s) 741, 772
AfiI CCNNNNNNNGG 2 cut(s) 354, 780
AflIII ACRYGT 1 cut(s) 1044
AgsI TTSAA 5 cut(s) 107, 327, 517, 791, 812
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
AlwI GGATC 6 cut(s) 20, 185, 331, 344, 751, 1018
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 382, 392
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 440, 692
AsuHPI GGTGA 3 cut(s) 217, 458, 561
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 2 cut(s) 440, 692
BaeGI GKGCMC 1 cut(s) 476
BamHI GGATCC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 394, 404
BccI CCATC 3 cut(s) 196, 306, 941
BceAI ACGGC 1 cut(s) 1047
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 269
BclI TGATCA 1 cut(s) 543
BfaI CTAG 3 cut(s) 6, 794, 840
BfmI CTRYAG 2 cut(s) 10, 465
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 4 cut(s) 383, 390, 393, 905
BlpI GCTNAGC 1 cut(s) 871
BlsI GCNGC 4 cut(s) 384, 391, 394, 906
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 2 cut(s) 440, 692
BmgT120I GGNCC 2 cut(s) 440, 692
BmiI GGNNCC 3 cut(s) 338, 473, 646
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 404
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 871
BsaAI YACGTR 1 cut(s) 1045
BsaBI GATNNNNATC 2 cut(s) 91, 297
BsaHI GRCGYC 1 cut(s) 820
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 780
Bse118I RCCGGY 1 cut(s) 437
Bse8I GATNNNNATC 2 cut(s) 91, 297
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 4 cut(s) 298, 435, 673, 1000
BseJI GATNNNNATC 2 cut(s) 91, 297
BseLI CCNNNNNNNGG 2 cut(s) 354, 780
BseMII CTCAG 4 cut(s) 87, 328, 775, 885
BseRI GAGGAG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 2 cut(s) 394, 404
BseYI CCCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 923
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 471
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 2 cut(s) 354, 780
BsmFI GGGAC 1 cut(s) 941
BsmI GAATGC 2 cut(s) 372, 485
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 476
Bsp1720I GCTNAGC 1 cut(s) 871
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 3 cut(s) 307, 389, 905
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 4 cut(s) 88, 327, 774, 884
BspFNI CGCG 1 cut(s) 923
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 338, 473, 646
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 6 cut(s) 20, 185, 331, 344, 751, 1018
BspT107I GGYRCC 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 820
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 775
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 820
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 1045
BstC8I GCNNGC 2 cut(s) 7, 387
BstDEI CTNAG 4 cut(s) 96, 314, 761, 871
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 298, 435, 673, 1000
BstFNI CGCG 1 cut(s) 923
BstMWI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 2 cut(s) 10, 465
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 1 cut(s) 923
BstV1I GCAGC 2 cut(s) 394, 404
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 3 cut(s) 336, 756, 1010
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 3 cut(s) 336, 756, 1010
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 960
BtsCI GGATG 4 cut(s) 298, 435, 673, 1000
BtsI GCAGTG 1 cut(s) 899
BtsIMutI CAGTG 3 cut(s) 527, 769, 899
Cac8I GCNNGC 2 cut(s) 7, 387
CciI TCATGA 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 440, 692
CseI GACGC 1 cut(s) 809
Csp6I GTAC 2 cut(s) 740, 771
CviAII CATG 7 cut(s) 77, 116, 157, 226, 242, 562, 722
CviQI GTAC 2 cut(s) 740, 771
DdeI CTNAG 4 cut(s) 96, 314, 761, 871
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 440, 692
Eco57I CTGAAG 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
FaqI GGGAC 1 cut(s) 941
FatI CATG 7 cut(s) 76, 115, 156, 225, 241, 561, 721
FauNDI CATATG 1 cut(s) 659
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 4 cut(s) 383, 390, 393, 905
FokI GGATG 4 cut(s) 305, 442, 680, 1007
Fsp4HI GCNGC 4 cut(s) 383, 390, 393, 905
FspBI CTAG 3 cut(s) 6, 794, 840
GluI GCNGC 4 cut(s) 383, 390, 393, 905
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 809
Hin1I GRCGYC 1 cut(s) 820
Hin1II CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 38, 180, 208, 812
HpaII CCGG 1 cut(s) 438
HphI GGTGA 3 cut(s) 217, 458, 561
Hpy166II GTNNAC 2 cut(s) 360, 598
Hpy188I TCNGA 9 cut(s) 30, 37, 86, 97, 317, 369, 609, 825, 982
Hpy188III TCNNGA 4 cut(s) 116, 188, 406, 788
Hpy8I GTNNAC 2 cut(s) 360, 598
HpyAV CCTTC 6 cut(s) 524, 614, 667, 683, 754, 946
HpyCH4III ACNGT 1 cut(s) 775
HpyCH4IV ACGT 1 cut(s) 1044
HpyCH4V TGCA 5 cut(s) 382, 485, 494, 525, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
HpyF3I CTNAG 4 cut(s) 96, 314, 761, 871
HpySE526I ACGT 1 cut(s) 1044
Hsp92I GRCGYC 1 cut(s) 820
Hsp92II CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
Ksp22I TGATCA 1 cut(s) 543
LmnI GCTCC 6 cut(s) 20, 126, 369, 462, 644, 730
Lsp1109I GCAGC 2 cut(s) 394, 404
LweI GCATC 1 cut(s) 404
MaeI CTAG 3 cut(s) 6, 794, 840
MaeII ACGT 1 cut(s) 1044
MaeIII GTNAC 3 cut(s) 567, 677, 832
MboII GAAGA 4 cut(s) 356, 601, 647, 869
MflI RGATCY 3 cut(s) 336, 756, 1010
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 2 cut(s) 915, 962
MmeI TCCRAC 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 4 cut(s) 69, 269, 537, 779
MslI CAYNNNNRTG 3 cut(s) 377, 662, 851
MspA1I CMGCKG 2 cut(s) 385, 907
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 2 cut(s) 372, 485
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 1 cut(s) 923
MwoI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 659
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
NlaIV GGNNCC 3 cut(s) 338, 473, 646
NmuCI GTSAC 2 cut(s) 567, 832
PagI TCATGA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 2 cut(s) 927, 936
PctI GAATGC 2 cut(s) 372, 485
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 4 cut(s) 38, 180, 208, 812
PkrI GCNGC 4 cut(s) 384, 391, 394, 906
Ppu21I YACGTR 1 cut(s) 1045
PsiI TTATAA 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 442
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 338, 473, 646
PspPI GGNCC 2 cut(s) 440, 692
PsuI RGATCY 3 cut(s) 336, 756, 1010
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 2 cut(s) 741, 772
RsaNI GTAC 2 cut(s) 740, 771
RseI CAYNNNNRTG 3 cut(s) 377, 662, 851
SaqAI TTAA 4 cut(s) 69, 269, 537, 779
SatI GCNGC 4 cut(s) 383, 390, 393, 905
Sau96I GGNCC 2 cut(s) 440, 692
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 1 cut(s) 404
SfcI CTRYAG 2 cut(s) 10, 465
SinI GGWCC 2 cut(s) 440, 692
SmiMI CAYNNNNRTG 3 cut(s) 377, 662, 851
Sse9I AATT 2 cut(s) 915, 962
SsiI CCGC 3 cut(s) 307, 389, 905
SspMI CTAG 3 cut(s) 6, 794, 840
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 775
TaiI ACGT 1 cut(s) 1047
TaqI TCGA 2 cut(s) 60, 235
TaqII GACCGA 1 cut(s) 345
TasI AATT 2 cut(s) 915, 962
TauI GCSGC 2 cut(s) 392, 907
TfiI GAWTC 4 cut(s) 38, 180, 208, 812
Tru1I TTAA 4 cut(s) 69, 269, 537, 779
Tru9I TTAA 4 cut(s) 69, 269, 537, 779
TscAI CASTG 3 cut(s) 527, 769, 906
TseFI GTSAC 2 cut(s) 567, 832
TseI GCWGC 2 cut(s) 382, 392
Tsp45I GTSAC 2 cut(s) 567, 832
TspDTI ATGAA 6 cut(s) 30, 65, 104, 221, 578, 602
TspRI CASTG 3 cut(s) 527, 769, 906
VpaK11BI GGWCC 2 cut(s) 440, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 921
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 3 cut(s) 6, 794, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.