Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Forward (+)

51602385 .. 51606487

Gene Structure 4103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAGTTCATTCTTTGCTTATATTTTTCAAAATCCATGAGGGCCATGGTGGATTTCTCCACTGGGACAACCTTGCTTGTTGTAAATTTGATTTTGATTCCTGCAGATACCTGTATGAGCTGGATGTCCATCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCTCCTCTCCCTTTGATCGGTCAACTCTTCGGAGCATTCTTGTGCAACTGGCGGCAGGGTCACAGATCAAGAAAGGAACTCTAAGATATTGGATGAGGTGCCCAACATCTGCATTCTATGCAGTAGTCATTGATGAGGACTTCAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCCTCTATTCCCATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCCAAATGTGAATGTAGCTTTTATAACACATGACAAGGAGCTTATTGTACCCTTCTTTGACAAGATCCTTGGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTGGGAGAATTGACAATGGCACTCTCCGATCTGGTGTGGGATGATATGGTAGCAGGATCTACTGAAAGACAGAGGACAGCAGTTCCCTACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

232

Amino Acids

26.15

Weight (kDa)

6.59

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	39 - 201	5.8e-28	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	267
AciI	CCGC	2 cut(s)	139, 221
AclWI	GGATC	3 cut(s)	176, 547, 667
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	2 cut(s)	537, 568
AfiI	CCNNNNNNNGG	2 cut(s)	186, 576
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	4 cut(s)	31, 159, 313, 587
AluBI	AGCT	5 cut(s)	121, 155, 428, 506, 529
AluI	AGCT	5 cut(s)	121, 155, 428, 506, 529
AlwI	GGATC	3 cut(s)	176, 547, 667
AoxI	GGCC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	43, 488
AsuHPI	GGTGA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	438
BccI	CCATC	1 cut(s)	138
BclI	TGATCA	1 cut(s)	339
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	43, 488
BmiI	GGNNCC	2 cut(s)	269, 442
BmrI	ACTGGG	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	46, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 576
Bse1I	ACTGG	2 cut(s)	68, 222
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	46, 556
BseGI	GGATG	4 cut(s)	130, 267, 469, 649
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	186, 576
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	2 cut(s)	68, 222
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	186, 576
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	2 cut(s)	204, 281
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	8 cut(s)	149, 168, 184, 234, 339, 552, 631, 659
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	2 cut(s)	139, 221
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	269, 442
BspMAI	CTGCAG	1 cut(s)	107
BspPI	GGATC	3 cut(s)	176, 547, 667
BspT107I	GGYRCC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	68, 222
BssECI	CCNNGG	2 cut(s)	46, 556
BssMI	GATC	8 cut(s)	149, 168, 184, 234, 339, 552, 631, 659
BssT1I	CCWWGG	2 cut(s)	46, 556
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	146, 251
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	4 cut(s)	130, 267, 469, 649
BstKTI	GATC	8 cut(s)	152, 171, 187, 237, 342, 555, 634, 662
BstMBI	GATC	8 cut(s)	149, 168, 184, 234, 339, 552, 631, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 287
BstNSI	RCATGY	1 cut(s)	697
BstSFI	CTRYAG	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	3 cut(s)	168, 552, 659
BstXI	CCANNNNNNTGG	2 cut(s)	460, 604
BstYI	RGATCY	3 cut(s)	168, 552, 659
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	130, 267, 469, 649
BtsIMutI	CAGTG	2 cut(s)	61, 323
Cfr13I	GGNCC	2 cut(s)	43, 488
Csp6I	GTAC	2 cut(s)	536, 567
CviAII	CATG	5 cut(s)	38, 47, 358, 518, 694
CviJI	RGCY	8 cut(s)	45, 121, 155, 428, 443, 506, 529, 580
CviKI_1	RGCY	8 cut(s)	45, 121, 155, 428, 443, 506, 529, 580
CviQI	GTAC	2 cut(s)	536, 567
DdeI	CTNAG	2 cut(s)	146, 251
DpnI	GATC	8 cut(s)	151, 170, 186, 236, 341, 554, 633, 661
DpnII	GATC	8 cut(s)	149, 168, 184, 234, 339, 552, 631, 659
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	46, 556
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	450
EcoT14I	CCWWGG	2 cut(s)	46, 556
ErhI	CCWWGG	2 cut(s)	46, 556
FaeI	CATG	5 cut(s)	41, 50, 361, 521, 697
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	5 cut(s)	37, 46, 357, 517, 693
FauNDI	CATATG	1 cut(s)	455
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	4 cut(s)	137, 274, 476, 656
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	41, 50, 361, 521, 697
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	2 cut(s)	192, 394
Hpy188I	TCNGA	4 cut(s)	149, 201, 405, 631
Hpy188III	TCNNGA	2 cut(s)	238, 584
Hpy8I	GTNNAC	2 cut(s)	192, 394
HpyAV	CCTTC	5 cut(s)	320, 410, 463, 479, 550
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	6 cut(s)	105, 214, 281, 290, 321, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 287
HpyF3I	CTNAG	2 cut(s)	146, 251
Hsp92II	CATG	5 cut(s)	41, 50, 361, 521, 697
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	8 cut(s)	149, 168, 184, 234, 339, 552, 631, 659
LmnI	GCTCC	3 cut(s)	201, 440, 526
LpnPI	CCDG	9 cut(s)	49, 107, 115, 125, 203, 210, 381, 620, 642
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	3 cut(s)	228, 363, 473
MalI	GATC	8 cut(s)	151, 170, 186, 236, 341, 554, 633, 661
MboI	GATC	8 cut(s)	149, 168, 184, 234, 339, 552, 631, 659
MboII	GAAGA	3 cut(s)	188, 397, 443
MflI	RGATCY	3 cut(s)	168, 552, 659
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	2 cut(s)	86, 611
MnlI	CCTC	7 cut(s)	34, 155, 184, 258, 298, 358, 669
MseI	TTAA	2 cut(s)	333, 575
MslI	CAYNNNNRTG	2 cut(s)	209, 458
Mva1269I	GAATGC	2 cut(s)	204, 281
MwoI	GCNNNNNNNGC	2 cut(s)	161, 287
NcoI	CCATGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	455
NdeII	GATC	8 cut(s)	149, 168, 184, 234, 339, 552, 631, 659
NlaIII	CATG	5 cut(s)	41, 50, 361, 521, 697
NlaIV	GGNNCC	2 cut(s)	269, 442
NmuCI	GTSAC	2 cut(s)	228, 363
NspI	RCATGY	1 cut(s)	697
PciI	ACATGT	1 cut(s)	693
PctI	GAATGC	2 cut(s)	204, 281
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	223
PscI	ACATGT	1 cut(s)	693
PsiI	TTATAA	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	269, 442
PspPI	GGNCC	2 cut(s)	43, 488
PstI	CTGCAG	1 cut(s)	107
PsuI	RGATCY	3 cut(s)	168, 552, 659
RsaI	GTAC	2 cut(s)	537, 568
RsaNI	GTAC	2 cut(s)	536, 567
RseI	CAYNNNNRTG	2 cut(s)	209, 458
SaqAI	TTAA	2 cut(s)	333, 575
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	8 cut(s)	149, 168, 184, 234, 339, 552, 631, 659
Sau96I	GGNCC	2 cut(s)	43, 488
SduI	GDGCHC	1 cut(s)	272
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	2 cut(s)	209, 458
Sse9I	AATT	2 cut(s)	86, 611
SsiI	CCGC	2 cut(s)	139, 221
SspMI	CTAG	1 cut(s)	590
StyI	CCWWGG	2 cut(s)	46, 556
TaaI	ACNGT	1 cut(s)	571
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	86, 611
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	333, 575
Tru9I	TTAA	2 cut(s)	333, 575
TscAI	CASTG	2 cut(s)	68, 323
TseFI	GTSAC	2 cut(s)	228, 363
Tsp45I	GTSAC	2 cut(s)	228, 363
TspDTI	ATGAA	2 cut(s)	374, 398
TspRI	CASTG	2 cut(s)	68, 323
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.