FvH4_3g19330

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001579
Physical Location & Seq
Reverse (-)
12477903 .. 12480331
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19330.t2

Sequence Viewer

Length: 1050 bp
ATGGCTGGCTACAGCTCCTCTTCTGACCCAAAATCAGATTCATTGGAGGTTGGAAATGTTGAGGATTTCAAGGTTCATGTGTTCAAATCATCATCTGAGTTGCTAGAAAAGCTGCATGAGAAGTGGAGCAAAGTAGAAAAGAAACCTTACCCGGCCATGTATTCCAGCACTTATGGTGGAATTATTCTTGATCCAGCTCTGATGGTGATTCCAATGGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCCATTCTCTTAGATGGATACCTCTATGAGCTGGATGTCCACCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCCCCTCTCCCCTTGATCGGTCGACTCTTCGAAGCATTCTTGTGCAACTTGCAGCAGCATCACAGATCAAGAAAGGAACTTTAAGATATTGGTTGAGTGCCGGTCCTGGCGACTTTTTGCTCTCACCAACAGGGTGCCCAACATCTGCATTCTATGCAGTAGTCATTGATGAGGACTTTAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCGTCTATTCCCATGAAGTCACCACAAATGGCAACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCGAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCCAAATGTGAATGTTGCTTTTATAACACATGACAAGGAGCTTATTGTACCCTTCTTTGACAAGATCCTTAGTGGTTGTACCATGTTGAGGCTTCTTGAATTGGCACCCAAGTTGGTTGAGTCAGGCTGTTTGAAAGCTGTGACAACTAGAAATATTACTGTGGAAGAAGCCAAAAGCTCTGCGGAAATGATGTTTGTAGGAAGCACACTGCCTCTCTTGCCAATTATCGAGTGGGATGAAAAGCCCATTGGCAATGGAGAGGTGGGAGAATTGACGATGGCGCTCTCTGATCTGGTGTGGGATGATATGGTAGCAGGATCTACTGAAACACAGAGGACAGCAGTTCCCTACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

350

Amino Acids

38.42

Weight (kDa)

5.2

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 30 - 257 2.3e-40 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AccB1I GGYRCC 2 cut(s) 471, 796
AccI GTMKAC 1 cut(s) 359
AciI CCGC 2 cut(s) 307, 875
AclWI GGATC 5 cut(s) 185, 331, 344, 751, 1018
AcoI YGGCCR 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 2 cut(s) 741, 772
AfiI CCNNNNNNNGG 2 cut(s) 354, 780
AgsI TTSAA 5 cut(s) 70, 85, 327, 791, 826
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 4 cut(s) 22, 54, 924, 956
AluBI AGCT 9 cut(s) 15, 112, 197, 289, 323, 632, 733, 830, 870
AluI AGCT 9 cut(s) 15, 112, 197, 289, 323, 632, 733, 830, 870
AlwI GGATC 5 cut(s) 185, 331, 344, 751, 1018
AoxI GGCC 2 cut(s) 153, 238
ApeKI GCWGC 3 cut(s) 112, 389, 392
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 2 cut(s) 440, 692
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 217, 453, 561
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 2 cut(s) 440, 692
BaeGI GKGCMC 1 cut(s) 476
BamHI GGATCC 1 cut(s) 336
BanI GGYRCC 2 cut(s) 471, 796
BbsI GAAGAC 1 cut(s) 642
BbvI GCAGC 3 cut(s) 99, 401, 404
BccI CCATC 3 cut(s) 196, 266, 964
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 269
BclI TGATCA 1 cut(s) 543
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 2 cut(s) 104, 840
BfmI CTRYAG 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 977
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 3 cut(s) 113, 390, 393
BlsI GCNGC 3 cut(s) 114, 391, 394
Bme1390I CCNGG 2 cut(s) 152, 444
Bme18I GGWCC 2 cut(s) 440, 692
BmgT120I GGNCC 2 cut(s) 440, 692
BmiI GGNNCC 4 cut(s) 338, 473, 646, 798
BmrFI CCNGG 2 cut(s) 152, 444
BmsI GCATC 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 780
Bse118I RCCGGY 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 952
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 4 cut(s) 298, 673, 934, 1000
BseLI CCNNNNNNNGG 2 cut(s) 354, 780
BseMI GCAATG 1 cut(s) 952
BseMII CTCAG 2 cut(s) 87, 328
BseRI GAGGAG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 3 cut(s) 99, 401, 404
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 155, 240
BshNI GGYRCC 2 cut(s) 471, 796
BsiEI CGRYCG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 152, 438
BslI CCNNNNNNNGG 2 cut(s) 354, 780
BsmI GAATGC 2 cut(s) 372, 485
BsnI GGCC 2 cut(s) 155, 240
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 476
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 2 cut(s) 307, 875
BspANI GGCC 2 cut(s) 155, 240
BspCNI CTCAG 2 cut(s) 88, 327
BspLI GGNNCC 4 cut(s) 338, 473, 646, 798
BspPI GGATC 5 cut(s) 185, 331, 344, 751, 1018
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 2 cut(s) 471, 796
BsrDI GCAATG 1 cut(s) 952
BsrFI RCCGGY 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 853
Bst6I CTCTTC 2 cut(s) 25, 369
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 4 cut(s) 96, 268, 314, 761
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 298, 673, 934, 1000
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 1 cut(s) 976
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 150, 442
BstSFI CTRYAG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 476
BstV1I GCAGC 3 cut(s) 99, 401, 404
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 3 cut(s) 336, 756, 1010
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 3 cut(s) 336, 756, 1010
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 155, 240
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 298, 673, 934, 1000
BtsI GCAGTG 1 cut(s) 899
BtsIMutI CAGTG 2 cut(s) 527, 899
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 976
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 440, 692
Csp6I GTAC 2 cut(s) 740, 771
CviAII CATG 8 cut(s) 77, 116, 157, 226, 242, 562, 722, 775
CviQI GTAC 2 cut(s) 740, 771
DdeI CTNAG 4 cut(s) 96, 268, 314, 761
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 25, 369
EarI CTCTTC 2 cut(s) 25, 369
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 440, 692
Eco57I CTGAAG 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 778
FatI CATG 8 cut(s) 76, 115, 156, 225, 241, 561, 721, 774
FauNDI CATATG 1 cut(s) 659
FbaI TGATCA 1 cut(s) 543
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 3 cut(s) 113, 390, 393
FokI GGATG 4 cut(s) 305, 680, 941, 1007
Fsp4HI GCNGC 3 cut(s) 113, 390, 393
FspBI CTAG 2 cut(s) 104, 840
GlaI GCGC 1 cut(s) 975
GluI GCNGC 3 cut(s) 113, 390, 393
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 2 cut(s) 155, 240
HapII CCGG 2 cut(s) 152, 438
HhaI GCGC 1 cut(s) 976
Hin1II CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 778
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 4 cut(s) 38, 208, 361, 812
HpaII CCGG 2 cut(s) 152, 438
HphI GGTGA 3 cut(s) 217, 453, 561
Hpy166II GTNNAC 3 cut(s) 298, 360, 598
Hpy188I TCNGA 7 cut(s) 25, 37, 97, 201, 317, 609, 982
Hpy188III TCNNGA 3 cut(s) 188, 406, 788
Hpy8I GTNNAC 3 cut(s) 298, 360, 598
HpyAV CCTTC 5 cut(s) 524, 614, 667, 683, 754
HpyCH4III ACNGT 1 cut(s) 853
HpyCH4IV ACGT 1 cut(s) 1044
HpyCH4V TGCA 6 cut(s) 115, 382, 389, 485, 494, 525
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
HpyF3I CTNAG 4 cut(s) 96, 268, 314, 761
HpySE526I ACGT 1 cut(s) 1044
Hsp92II CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 778
HspAI GCGC 1 cut(s) 974
Ksp22I TGATCA 1 cut(s) 543
LmnI GCTCC 4 cut(s) 20, 126, 644, 730
Lsp1109I GCAGC 3 cut(s) 99, 401, 404
LweI GCATC 1 cut(s) 404
MaeI CTAG 2 cut(s) 104, 840
MaeII ACGT 1 cut(s) 1044
MaeIII GTNAC 3 cut(s) 567, 677, 832
MboII GAAGA 5 cut(s) 12, 356, 601, 647, 869
MflI RGATCY 3 cut(s) 336, 756, 1010
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 4 cut(s) 180, 791, 915, 962
MlyI GAGTC 2 cut(s) 355, 821
MmeI TCCRAC 1 cut(s) 31
MseI TTAA 3 cut(s) 419, 516, 537
MslI CAYNNNNRTG 2 cut(s) 377, 662
MspI CCGG 2 cut(s) 152, 438
MspR9I CCNGG 2 cut(s) 152, 444
Mva1269I GAATGC 2 cut(s) 372, 485
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 659
NlaIII CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 778
NlaIV GGNNCC 4 cut(s) 338, 473, 646, 798
NmuCI GTSAC 2 cut(s) 567, 832
NspV TTCGAA 1 cut(s) 367
PctI GAATGC 2 cut(s) 372, 485
PfeI GAWTC 2 cut(s) 38, 208
PkrI GCNGC 3 cut(s) 114, 391, 394
PleI GAGTC 2 cut(s) 355, 820
PpsI GAGTC 2 cut(s) 355, 820
PsiI TTATAA 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 4 cut(s) 338, 473, 646, 798
PspPI GGNCC 2 cut(s) 440, 692
PsuI RGATCY 3 cut(s) 336, 756, 1010
RsaI GTAC 2 cut(s) 741, 772
RsaNI GTAC 2 cut(s) 740, 771
RseI CAYNNNNRTG 2 cut(s) 377, 662
SalI GTCGAC 1 cut(s) 358
SaqAI TTAA 3 cut(s) 419, 516, 537
SatI GCNGC 3 cut(s) 113, 390, 393
Sau96I GGNCC 2 cut(s) 440, 692
SchI GAGTC 2 cut(s) 355, 821
ScrFI CCNGG 2 cut(s) 152, 444
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 1 cut(s) 404
SfcI CTRYAG 1 cut(s) 10
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 2 cut(s) 440, 692
SmiMI CAYNNNNRTG 2 cut(s) 377, 662
Sse9I AATT 4 cut(s) 180, 791, 915, 962
SsiI CCGC 2 cut(s) 307, 875
SspI AATATT 1 cut(s) 847
SspMI CTAG 2 cut(s) 104, 840
StyD4I CCNGG 2 cut(s) 150, 442
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 853
TaiI ACGT 1 cut(s) 1047
TaqI TCGA 4 cut(s) 235, 359, 367, 921
TaqII GACCGA 1 cut(s) 345
TasI AATT 4 cut(s) 180, 791, 915, 962
TfiI GAWTC 2 cut(s) 38, 208
Tru1I TTAA 3 cut(s) 419, 516, 537
Tru9I TTAA 3 cut(s) 419, 516, 537
TscAI CASTG 2 cut(s) 527, 906
TseFI GTSAC 2 cut(s) 567, 832
TseI GCWGC 3 cut(s) 112, 389, 392
Tsp45I GTSAC 2 cut(s) 567, 832
TspDTI ATGAA 6 cut(s) 30, 65, 221, 578, 602, 945
TspRI CASTG 2 cut(s) 527, 906
VpaK11BI GGWCC 2 cut(s) 440, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 921
XmiI GTMKAC 1 cut(s) 359
XspI CTAG 2 cut(s) 104, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.