Rh1DG018000

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001579
Physical Location & Seq
Reverse (-)
2900689 .. 2901333
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG018000.1

Sequence Viewer

Length: 645 bp
ATGAGCTTGAGTTGTAAATTTGATTTTGATTCCTGCAGATACCTGTATGAGTTGGATGTCCATCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCCCCTCTCCCTTTGATCGGTCAACTCTTCGGAGCATTCTTGTGCAACTGGCGGCAGGGTCACAGATAAAGAAAGGAACTCTAAGATATTGGATGAGTGCCGGTCCTGGTGATTTTTTGCTCCAACCTACAGGGTGCCCAACATCTGCATTCTATGCAGTAGTCATTGATGAGGACTTCAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCCTCTATTCCCATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCCAAATGTGAATGTAGCTTTTATAACACATGACAAGGAGCTTATTGTACCCTTCTTTGACAAGATCCTTGGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTTGAGTCGGGGCGTCTGAAAGGTGTGACAACTAGAAACATTAGTGTTAAGAAGCCAAAAGCTCAGCGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

214

Amino Acids

23.83

Weight (kDa)

9.25

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 16 - 190 2.8e-32 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 234
AciI CCGC 3 cut(s) 70, 152, 637
AclWI GGATC 3 cut(s) 94, 107, 514
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 583
AfaI GTAC 2 cut(s) 504, 535
AfiI CCNNNNNNNGG 2 cut(s) 117, 543
AgsI TTSAA 3 cut(s) 90, 280, 554
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 6 cut(s) 6, 86, 395, 473, 496, 632
AluI AGCT 6 cut(s) 6, 86, 395, 473, 496, 632
AlwI GGATC 3 cut(s) 94, 107, 514
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 203, 455
AsuHPI GGTGA 2 cut(s) 221, 324
AvaII GGWCC 2 cut(s) 203, 455
BaeGI GKGCMC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 405
BccI CCATC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 1 cut(s) 306
BfaI CTAG 2 cut(s) 557, 603
BfmI CTRYAG 2 cut(s) 34, 228
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 203, 455
BmgT120I GGNCC 2 cut(s) 203, 455
BmiI GGNNCC 3 cut(s) 101, 236, 409
BmrFI CCNGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 583
BsaJI CCNNGG 1 cut(s) 523
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 543
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 3 cut(s) 61, 198, 436
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 117, 543
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 117, 543
BsmI GAATGC 2 cut(s) 135, 248
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 5 cut(s) 80, 99, 115, 306, 519
Bsp1720I GCTNAGC 1 cut(s) 633
BspACI CCGC 3 cut(s) 70, 152, 637
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 101, 236, 409
BspMAI CTGCAG 1 cut(s) 38
BspPI GGATC 3 cut(s) 94, 107, 514
BspT107I GGYRCC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 5 cut(s) 80, 99, 115, 306, 519
BssNI GRCGYC 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 583
BstAPI GCANNNNNTGC 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 77, 182, 633
BstF5I GGATG 3 cut(s) 61, 198, 436
BstKTI GATC 5 cut(s) 83, 102, 118, 309, 522
BstMBI GATC 5 cut(s) 80, 99, 115, 306, 519
BstMWI GCNNNNNNNGC 2 cut(s) 92, 254
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 2 cut(s) 34, 228
BstSLI GKGCMC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 2 cut(s) 99, 519
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 2 cut(s) 99, 519
BtsCI GGATG 3 cut(s) 61, 198, 436
BtsIMutI CAGTG 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 203, 455
CseI GACGC 1 cut(s) 572
Csp6I GTAC 2 cut(s) 503, 534
CviAII CATG 2 cut(s) 325, 485
CviJI RGCY 9 cut(s) 6, 86, 395, 410, 473, 496, 547, 625, 632
CviKI_1 RGCY 9 cut(s) 6, 86, 395, 410, 473, 496, 547, 625, 632
CviQI GTAC 2 cut(s) 503, 534
DdeI CTNAG 3 cut(s) 77, 182, 633
DpnI GATC 5 cut(s) 82, 101, 117, 308, 521
DpnII GATC 5 cut(s) 80, 99, 115, 306, 519
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 203, 455
Eco57I CTGAAG 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 2 cut(s) 328, 488
FaiI YATR 8 cut(s) 48, 255, 326, 422, 424, 446, 479, 486
FatI CATG 2 cut(s) 324, 484
FauNDI CATATG 1 cut(s) 422
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 3 cut(s) 68, 205, 443
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 557, 603
GluI GCNGC 1 cut(s) 153
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 572
Hin1I GRCGYC 1 cut(s) 583
Hin1II CATG 2 cut(s) 328, 488
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 2 cut(s) 29, 575
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 221, 324
Hpy166II GTNNAC 2 cut(s) 123, 361
Hpy188I TCNGA 4 cut(s) 80, 132, 372, 588
Hpy188III TCNNGA 1 cut(s) 551
Hpy8I GTNNAC 2 cut(s) 123, 361
HpyAV CCTTC 5 cut(s) 287, 377, 430, 446, 517
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4V TGCA 6 cut(s) 36, 145, 248, 257, 288, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 254
HpyF3I CTNAG 3 cut(s) 77, 182, 633
Hsp92I GRCGYC 1 cut(s) 583
Hsp92II CATG 2 cut(s) 328, 488
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 5 cut(s) 80, 99, 115, 306, 519
LmnI GCTCC 4 cut(s) 132, 225, 407, 493
LpnPI CCDG 9 cut(s) 46, 56, 134, 141, 192, 214, 216, 219, 348
MaeI CTAG 2 cut(s) 557, 603
MaeIII GTNAC 4 cut(s) 159, 330, 440, 595
MalI GATC 5 cut(s) 82, 101, 117, 308, 521
MboI GATC 5 cut(s) 80, 99, 115, 306, 519
MboII GAAGA 3 cut(s) 119, 364, 410
MflI RGATCY 2 cut(s) 99, 519
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 2 cut(s) 33, 247
MnlI CCTC 4 cut(s) 86, 115, 265, 325
MseI TTAA 3 cut(s) 300, 542, 618
MslI CAYNNNNRTG 2 cut(s) 140, 425
MspA1I CMGCKG 1 cut(s) 637
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 135, 248
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 92, 254
NdeI CATATG 1 cut(s) 422
NdeII GATC 5 cut(s) 80, 99, 115, 306, 519
NlaIII CATG 2 cut(s) 328, 488
NlaIV GGNNCC 3 cut(s) 101, 236, 409
NmuCI GTSAC 3 cut(s) 159, 330, 595
PctI GAATGC 2 cut(s) 135, 248
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PsiI TTATAA 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 101, 236, 409
PspPI GGNCC 2 cut(s) 203, 455
PstI CTGCAG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 99, 519
RsaI GTAC 2 cut(s) 504, 535
RsaNI GTAC 2 cut(s) 503, 534
RseI CAYNNNNRTG 2 cut(s) 140, 425
SaqAI TTAA 3 cut(s) 300, 542, 618
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 5 cut(s) 80, 99, 115, 306, 519
Sau96I GGNCC 2 cut(s) 203, 455
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 239
SfcI CTRYAG 2 cut(s) 34, 228
SinI GGWCC 2 cut(s) 203, 455
SmiMI CAYNNNNRTG 2 cut(s) 140, 425
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 17
SsiI CCGC 3 cut(s) 70, 152, 637
SspMI CTAG 2 cut(s) 557, 603
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 1 cut(s) 538
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 17
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 300, 542, 618
Tru9I TTAA 3 cut(s) 300, 542, 618
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 3 cut(s) 159, 330, 595
Tsp45I GTSAC 3 cut(s) 159, 330, 595
TspDTI ATGAA 2 cut(s) 341, 365
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 203, 455
XapI RAATTY 1 cut(s) 17
XspI CTAG 2 cut(s) 557, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.