Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Reverse (-)

4846183 .. 4849142

Gene Structure 2960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCTTCCCTCCAATCTTTCTCAAAACCCGTCTCGCAAAACCCACATATTACCAGAAAACCAGTTGATCATTCTCTTAGTTTGAGTCTAATTCCAAGAAATCTTGCATTTTTAGGACCTGGGTTACGTTTTATTCACCATGGGTCCGCCAAAGAGATGAAAATCATCAGAAGCTTGAAACGAACCGAAGCTGTGACTGACATTTTTGCGGCAGATTACAGCATTCAAGTTTCTGATGTCCCACTGCTGACTTGCTCAGAGTTGGACAATTTTGATGATTCAGTGATTCAATATCTCTACGAGCTGGACCAGCACATTGACCGTATTTTGAGGTCAGCATCCATGGCCAAAATTGGCCTACCGTTTGATCGAGAAAGCATTAGAAAAATACTCATACAAACAGTGAGTGCTTCCAAGTGCAAAACAGGATCACTAAGGTACTGGCTCTCGGTAGGACCTGGTGATTTTCAGTTGTCTCCCTCTGGCTGCAATCAGCCAGCTCTTTATGCTATTGTAGTCCAAGACAAATCACCTTTTAGTTCAAAGGGTGTTACAGTAGTAACTTCGTCAATCCCTATAAAACCACCCCAATTTGCGGTTATGAAGAGTGTGAATTATCTTCCGAATGTGCTTTCAAAGATGGAGGCTGAAGAAAAAGGTGCCTTTGCAGCGATTTGGCTGGATGGTGATGGATTTATTGCGGAAGGGCCTAACATGAATGTGGCTTTTGTTACAAAAGATAAGGAACTTCTGATGCCTCAGTTTGACAAAATACTAAGTGGCTGCACGGCTAAGAGAGTTTTGGTGCTTGCACAAGGCCTGGTGAAGGAGGGTAAGCTTCAGGGAGTGAGAGTCGAAAATGTGACTGTTGAGGAAGGGAAAAAGGCAGATGAGATGATGCTTATCGGCAGTGGAATTCTTGTTCGCCCTATAGTGCAATGGGACGAGCAGATCATTGGTGATGGCAGAGAAGGACCCTTGACTCAGATTCTCTTGAATCTTATCATCAAGGACATGGAATCCGGCCCCCCTTACTGTCCGAACACCTATTCCTTACTAGCCCCGACACCGTCTGATACTTTCAATCCTGTTGAAATCTCAAGCACCGGAAACCAGTCATTACCCAATTGGGACATTTCTATCCAGTGTTCACTTTGGAGCTCTGCTCTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

391

Amino Acids

42.89

Weight (kDa)

6.02

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	100 - 314	3.3e-42	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	659
AciI	CCGC	4 cut(s)	147, 209, 596, 701
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	915
AcuI	CTGAAG	2 cut(s)	669, 824
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	595, 826
AgsI	TTSAA	8 cut(s)	178, 227, 290, 543, 636, 997, 1084, 1094
AjnI	CCWGG	3 cut(s)	118, 457, 819
AloI	GAACNNNNNNTCC	4 cut(s)	906, 938, 1034, 1066
AluBI	AGCT	6 cut(s)	174, 191, 304, 500, 838, 1161
AluI	AGCT	6 cut(s)	174, 191, 304, 500, 838, 1161
Alw21I	GWGCWC	1 cut(s)	1163
Alw26I	GTCTC	2 cut(s)	37, 480
AlwI	GGATC	1 cut(s)	436
AoxI	GGCC	5 cut(s)	345, 355, 707, 817, 1024
ApeKI	GCWGC	3 cut(s)	486, 668, 783
ApoI	RAATTY	1 cut(s)	915
AspS9I	GGNCC	7 cut(s)	116, 144, 307, 455, 707, 974, 1025
AsuHPI	GGTGA	6 cut(s)	128, 473, 522, 698, 835, 971
AvaII	GGWCC	5 cut(s)	116, 144, 307, 455, 974
BalI	TGGCCA	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	1163
Bbv12I	GWGCWC	1 cut(s)	1163
BbvI	GCAGC	3 cut(s)	473, 680, 770
BccI	CCATC	4 cut(s)	634, 677, 683, 956
BceAI	ACGGC	1 cut(s)	804
BciT130I	CCWGG	3 cut(s)	120, 459, 821
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	37, 480
BfaI	CTAG	1 cut(s)	1058
BfmI	CTRYAG	1 cut(s)	930
BisI	GCNGC	4 cut(s)	210, 487, 669, 784
BlsI	GCNGC	4 cut(s)	211, 488, 670, 785
Bme1390I	CCNGG	3 cut(s)	120, 459, 821
Bme18I	GGWCC	5 cut(s)	116, 144, 307, 455, 974
BmgT120I	GGNCC	7 cut(s)	116, 144, 307, 455, 707, 974, 1025
BmiI	GGNNCC	4 cut(s)	145, 661, 976, 1027
BmrFI	CCNGG	3 cut(s)	120, 459, 821
BmsI	GCATC	3 cut(s)	347, 744, 888
BplI	GAGNNNNNCTC	1 cut(s)	1150
BpuEI	CTTGAG	1 cut(s)	1084
BsaBI	GATNNNNATC	2 cut(s)	161, 902
BsaJI	CCNNGG	3 cut(s)	119, 139, 342
BsaWI	WCCGGW	1 cut(s)	1106
BsaXI	ACNNNNNCTCC	2 cut(s)	837, 867
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 826
Bse1I	ACTGG	4 cut(s)	62, 446, 1114, 1144
Bse3DI	GCAATG	1 cut(s)	944
Bse8I	GATNNNNATC	2 cut(s)	161, 902
BseBI	CCWGG	3 cut(s)	120, 459, 821
BseDI	CCNNGG	3 cut(s)	119, 139, 342
BseGI	GGATG	2 cut(s)	338, 688
BseJI	GATNNNNATC	2 cut(s)	161, 902
BseLI	CCNNNNNNNGG	2 cut(s)	595, 826
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	3 cut(s)	270, 773, 998
BseNI	ACTGG	4 cut(s)	62, 446, 1114, 1144
BseXI	GCAGC	3 cut(s)	473, 680, 770
BsgI	GTGCAG	1 cut(s)	769
BshFI	GGCC	5 cut(s)	347, 357, 709, 819, 1026
BshNI	GGYRCC	1 cut(s)	659
BsiHKAI	GWGCWC	1 cut(s)	1163
BsiSI	CCGG	2 cut(s)	1023, 1107
BslFI	GGGAC	3 cut(s)	224, 956, 1145
BslI	CCNNNNNNNGG	2 cut(s)	595, 826
BsmAI	GTCTC	2 cut(s)	37, 480
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	3 cut(s)	224, 956, 1145
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	5 cut(s)	347, 357, 709, 819, 1026
Bsp1286I	GDGCHC	1 cut(s)	1163
Bsp143I	GATC	4 cut(s)	67, 367, 428, 951
Bsp19I	CCATGG	2 cut(s)	139, 342
BspACI	CCGC	4 cut(s)	147, 209, 596, 701
BspANI	GGCC	5 cut(s)	347, 357, 709, 819, 1026
BspCNI	CTCAG	3 cut(s)	269, 772, 997
BspLI	GGNNCC	4 cut(s)	145, 661, 976, 1027
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	944
BsrI	ACTGG	4 cut(s)	62, 446, 1114, 1144
BssECI	CCNNGG	3 cut(s)	119, 139, 342
BssMI	GATC	4 cut(s)	67, 367, 428, 951
BssT1I	CCWWGG	2 cut(s)	139, 342
Bst2UI	CCWGG	3 cut(s)	120, 459, 821
Bst4CI	ACNGT	7 cut(s)	323, 363, 403, 556, 868, 1037, 1071
Bst6I	CTCTTC	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	498, 810
BstDEI	CTNAG	7 cut(s)	77, 256, 434, 759, 776, 792, 984
BstDSI	CCRYGG	2 cut(s)	139, 342
BstENI	CCTNNNNNAGG	1 cut(s)	824
BstF5I	GGATG	2 cut(s)	338, 688
BstKTI	GATC	4 cut(s)	70, 370, 431, 954
BstMAI	GTCTC	2 cut(s)	37, 480
BstMBI	GATC	4 cut(s)	67, 367, 428, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	310, 344, 506, 668
BstNI	CCWGG	3 cut(s)	120, 459, 821
BstSCI	CCNGG	3 cut(s)	118, 457, 819
BstSFI	CTRYAG	1 cut(s)	930
BstV1I	GCAGC	3 cut(s)	473, 680, 770
BsuRI	GGCC	5 cut(s)	347, 357, 709, 819, 1026
BtgI	CCRYGG	2 cut(s)	139, 342
BtsCI	GGATG	2 cut(s)	338, 688
BtsI	GCAGTG	2 cut(s)	242, 916
BtsIMutI	CAGTG	5 cut(s)	242, 288, 408, 916, 1151
Cac8I	GCNNGC	2 cut(s)	498, 810
Cfr13I	GGNCC	7 cut(s)	116, 144, 307, 455, 707, 974, 1025
CsiI	ACCWGGT	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	4 cut(s)	140, 343, 715, 1015
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	7 cut(s)	77, 256, 434, 759, 776, 792, 984
DpnI	GATC	4 cut(s)	69, 369, 430, 953
DpnII	GATC	4 cut(s)	67, 367, 428, 951
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	1161
Eco130I	CCWWGG	2 cut(s)	139, 342
Eco147I	AGGCCT	1 cut(s)	819
Eco24I	GRGCYC	1 cut(s)	1163
Eco47I	GGWCC	5 cut(s)	116, 144, 307, 455, 974
Eco53kI	GAGCTC	1 cut(s)	1161
Eco57I	CTGAAG	2 cut(s)	669, 824
EcoICRI	GAGCTC	1 cut(s)	1161
EcoNI	CCTNNNNNAGG	1 cut(s)	824
EcoO109I	RGGNCCY	4 cut(s)	116, 455, 707, 974
EcoRI	GAATTC	1 cut(s)	915
EcoRII	CCWGG	3 cut(s)	118, 457, 819
EcoT14I	CCWWGG	2 cut(s)	139, 342
EcoT38I	GRGCYC	1 cut(s)	1163
ErhI	CCWWGG	2 cut(s)	139, 342
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	4 cut(s)	143, 346, 718, 1018
FaqI	GGGAC	3 cut(s)	224, 956, 1145
FatI	CATG	4 cut(s)	139, 342, 714, 1014
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	210, 487, 669, 784
FokI	GGATG	2 cut(s)	325, 695
FriOI	GRGCYC	1 cut(s)	1163
Fsp4HI	GCNGC	4 cut(s)	210, 487, 669, 784
FspBI	CTAG	1 cut(s)	1058
GluI	GCNGC	4 cut(s)	210, 487, 669, 784
HaeIII	GGCC	5 cut(s)	347, 357, 709, 819, 1026
HapII	CCGG	2 cut(s)	1023, 1107
Hin1II	CATG	4 cut(s)	143, 346, 718, 1018
HindIII	AAGCTT	2 cut(s)	172, 836
HinfI	GANTC	8 cut(s)	85, 278, 286, 852, 982, 988, 997, 1019
HpaII	CCGG	2 cut(s)	1023, 1107
HphI	GGTGA	6 cut(s)	128, 473, 522, 698, 835, 971
Hpy166II	GTNNAC	1 cut(s)	1151
Hpy188I	TCNGA	8 cut(s)	170, 235, 259, 624, 753, 987, 1041, 1075
Hpy188III	TCNNGA	2 cut(s)	371, 994
Hpy8I	GTNNAC	1 cut(s)	1151
HpyAV	CCTTC	4 cut(s)	698, 820, 869, 965
HpyCH4III	ACNGT	7 cut(s)	323, 363, 403, 556, 868, 1037, 1071
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	7 cut(s)	107, 420, 489, 668, 786, 812, 937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	310, 344, 506, 668
HpyF3I	CTNAG	7 cut(s)	77, 256, 434, 759, 776, 792, 984
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	143, 346, 718, 1018
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	67, 367, 428, 951
LmnI	GCTCC	1 cut(s)	1158
Lsp1109I	GCAGC	3 cut(s)	473, 680, 770
LweI	GCATC	3 cut(s)	347, 744, 888
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	1 cut(s)	1058
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	6 cut(s)	123, 193, 550, 559, 730, 862
MalI	GATC	4 cut(s)	69, 369, 430, 953
MboI	GATC	4 cut(s)	67, 367, 428, 951
MboII	GAAGA	3 cut(s)	611, 616, 662
MfeI	CAATTG	1 cut(s)	1126
MhlI	GDGCHC	1 cut(s)	1163
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	7 cut(s)	90, 268, 351, 590, 613, 915, 1126
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	3 cut(s)	94, 861, 976
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	7 cut(s)	20, 324, 490, 637, 768, 823, 865
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	719
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	2 cut(s)	1023, 1107
MspR9I	CCNGG	3 cut(s)	120, 459, 821
MunI	CAATTG	1 cut(s)	1126
Mva1269I	GAATGC	1 cut(s)	222
MvaI	CCWGG	3 cut(s)	120, 459, 821
MwoI	GCNNNNNNNGC	4 cut(s)	310, 344, 506, 668
NcoI	CCATGG	2 cut(s)	139, 342
NdeII	GATC	4 cut(s)	67, 367, 428, 951
NlaIII	CATG	4 cut(s)	143, 346, 718, 1018
NlaIV	GGNNCC	4 cut(s)	145, 661, 976, 1027
NmuCI	GTSAC	2 cut(s)	193, 862
PceI	AGGCCT	1 cut(s)	819
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	5 cut(s)	278, 286, 988, 997, 1019
PflFI	GACNNNGTC	1 cut(s)	1069
PkrI	GCNGC	4 cut(s)	211, 488, 670, 785
PleI	GAGTC	3 cut(s)	93, 860, 976
PpsI	GAGTC	3 cut(s)	93, 860, 976
PpuMI	RGGWCCY	3 cut(s)	116, 455, 974
Psp124BI	GAGCTC	1 cut(s)	1163
Psp5II	RGGWCCY	3 cut(s)	116, 455, 974
Psp6I	CCWGG	3 cut(s)	118, 457, 819
PspGI	CCWGG	3 cut(s)	118, 457, 819
PspN4I	GGNNCC	4 cut(s)	145, 661, 976, 1027
PspPI	GGNCC	7 cut(s)	116, 144, 307, 455, 707, 974, 1025
PspPPI	RGGWCCY	3 cut(s)	116, 455, 974
PsyI	GACNNNGTC	1 cut(s)	1069
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	719
SacI	GAGCTC	1 cut(s)	1163
SatI	GCNGC	4 cut(s)	210, 487, 669, 784
Sau3AI	GATC	4 cut(s)	67, 367, 428, 951
Sau96I	GGNCC	7 cut(s)	116, 144, 307, 455, 707, 974, 1025
SchI	GAGTC	3 cut(s)	94, 861, 976
ScrFI	CCNGG	3 cut(s)	120, 459, 821
SduI	GDGCHC	1 cut(s)	1163
SexAI	ACCWGGT	1 cut(s)	457
SfaNI	GCATC	3 cut(s)	347, 744, 888
SfcI	CTRYAG	1 cut(s)	930
SinI	GGWCC	5 cut(s)	116, 144, 307, 455, 974
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	1 cut(s)	1099
SmoI	CTYRAG	1 cut(s)	1099
Sse9I	AATT	7 cut(s)	90, 268, 351, 590, 613, 915, 1126
SseBI	AGGCCT	1 cut(s)	819
SsiI	CCGC	4 cut(s)	147, 209, 596, 701
SspMI	CTAG	1 cut(s)	1058
SstI	GAGCTC	1 cut(s)	1163
StuI	AGGCCT	1 cut(s)	819
StyD4I	CCNGG	3 cut(s)	118, 457, 819
StyI	CCWWGG	2 cut(s)	139, 342
TaaI	ACNGT	7 cut(s)	323, 363, 403, 556, 868, 1037, 1071
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	370, 855
TasI	AATT	7 cut(s)	90, 268, 351, 590, 613, 915, 1126
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	5 cut(s)	278, 286, 988, 997, 1019
TscAI	CASTG	5 cut(s)	249, 288, 408, 916, 1151
TseFI	GTSAC	2 cut(s)	193, 862
TseI	GCWGC	3 cut(s)	486, 668, 783
Tsp45I	GTSAC	2 cut(s)	193, 862
TspDTI	ATGAA	3 cut(s)	173, 617, 731
TspRI	CASTG	5 cut(s)	249, 288, 408, 916, 1151
Tth111I	GACNNNGTC	1 cut(s)	1069
VpaK11BI	GGWCC	5 cut(s)	116, 144, 307, 455, 974
XagI	CCTNNNNNAGG	1 cut(s)	824
XapI	RAATTY	1 cut(s)	915
XspI	CTAG	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.