Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Forward (+)

49580162 .. 49586086

Gene Structure 5925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0344700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGGCACCACCAACTTCCTCCATTCCAATTCCTTCTAAACTTTCACCGACCTCTTCTTCTTCTTCCTCTCCTCACTCTTCTTTGCTTCTCCACAATTCTATGCTCAAAAGGCTTTCTCACCGCTTCATCTCTTCACACCCAACAAAACTATTCTCCTCACCCAGAAAAACACACCCTCTTCCTCACTCTTTGATTTCTCATCGACCCTTTTACGCTTCCAAGGTTTTAGCCATGGCTCACCAACACACTTCGAACCCAACTTCCCACAAGCACACCAATCGCCTCGCTGCCGAGCACAGTCCCTATCTCCTTCAACACGCCCACAACCCGGTTGATTGGTATCCATGGAGTGAAGAGGCTTTCGCCGAAGCTCGAAAGAGAGATGTGCCCATCTTCTTATCAATCGGGTACAGCACGTGCCATTGGTGTCACGTTATGGAGGTCGAGTCTTTTGAGGATGAAGGCGTTGCCAAGTTGCTGAATGAGTGGTTTGTTAGTATCAAGGTGGATCGGGAGGAAAGACCAGATGTGGATAAGGTATACATGACCTATGTACAGGCTCTGTATGGTGGTGGAGGCTGGCCACTGACGGTGTTCCTTTCACCAGATTTGAAACCTTTGATGGGTGGAACTTACTTTCCCCCAGAGGACAAGTATGGAAGACCAGGATTTAAGACTATACTTGGAAAAGTGAAAGCAGCCTGGGAGACCAAGAGGGATGTGCTTGTCAAGAGTGGAGCCTTTGCAATTGAACAGTTGTCAGAAGCATTGTCAACAAGTGCAGGTTCTAAAAAATTGTCAGATGGGATCCCAAAGAATGCTTTGCGTCTATGTGCGGAGCAACTTTCTCAAAGTTATGATTCAAAGTTTGGTGGGTTTGGATCTGCCCCAAAGTTTCCTAGACCAGTTGAGATTCAGCTGATGCTTTATTACTCAAAGAAGTCGGAGGAAACTGGAAATTCTGGCAAGGCCAATGAAGTTCTGAAAAAGGTTCTGTTTACCTTGCAATGCATGGCAAAAGGGGGAATTCACGATCACGTCGGAGGTGGCTTCCACCGATATAGCGTGGATGAGTGCTGGCATGTACCGCACTTTGAGAAGATGTTGTATGATCAGGGCCAACTTGCTAATGTCTACCTAGATGCCTTTTCTATTACCAAAGATGTATTCTATGCATCTATTGCTCGGGATGTTCTTGATTATCTGAGGAGAGACATGATTGGACCAGATGGCGAAATATATTCAGCAGAAGATGCTGATAGTGCTGAATCTGAAGGTGCATCCAGAAAAAAGGAAGGAGCATTCTATGTTTGGTCTAGCAAAGAGGTTGAAGACATACTTGGAGAAGATGCAACTCTTTTTAAGAACCACTACTATATAAAGCCTTCCGGTAACTGTGACCTTTCCAGAATGAGTGATCCTCATAATGAATTCAAGAGTAAGAATGTGCTGATTGAGAGAAAAACTCATTCCGAGGCATCAAAATTTTCCATGCCGGTTGAGAAATACCTCAATATTCTGGGTCAGAGCAGGCGAAAGCTTTTTGAAATAAGATGTAGTCGACCAAGACCACATTTGGATGATAAGGTAATTGTAGCATGGAATGGACTGGCCATCTCAGCCTTTGCAAGAGCCTCTAAAATTCTAAAGAATGAACCTAAGGAGATCAAGTTCAACTTTCCTGTTGTTGGTTGTGATCCGCGGGAGTACATTGAAGTTGCAGAAAAGGCAGCATCTTTTATCAGGCGACACCTTTACAATGAGCAATCTCATCGACTGCAACGCAGCTTTAGGAACGGCCCATCTAAAGCCCCTGGATTTTTAGATGATTATGCTTTTCTTATTTCAGGGTTATTGGATCTTTATGAATTTGGTGGCCAAACCAGCTGGCTAGTTTGGGCAATTGAACTGCAAGACATGCAGGATGAAATATTTCTTGATAAAGAGGGAGGCGGCTATTTTAATACCCCAGGTGATGACCCTAGTGTTCTCCTTCGTGTGAAGGAAGATCATGATGGGGCAGAGCCCTCTGGAAACTCGGTTTCTGTGATCAACCTTGTGAGATTGGCATCAATACTATCTGGCAACAGGTCTGAGCATTACAGACAGGAAGCTGAACATGTTCTGGCGGTTTTTGAGACAAGATTAAACGACATGGCCATGGCAGTACCTTTAATGTGTTGTGCTGCAGACATGCTCACTGTTCCTTCTCGGAAGCAAGTTGTCTTGGTTGGCCAGAAAACTAGAGAGTTTGAAAACATGCTTGCCGCAGCTCATGCATCATATGATACCAACAAAACGGTTATTCACATAGATCCAACTAATTCGGAAGAGTTGCAATTCTGGGAAGACAAAAACAGCAACATTGCGCTCATGGCAAAGAATCATGTTGCTGCAGACAAAGTGGTTGCTCTCGTTTGCCAAAACTTTACTTGCAGTGCGCCTGTCGCTGACCCTGGATCCCTGGAGGCTCTGCTCTCCAAGAAATCAGTCCCTTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

834

Amino Acids

93.38

Weight (kDa)

6.64

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredox_DsbH	PF03190	92 - 252	1.2e-75	Protein of unknown function, DUF255
Thioredoxin_7	PF13899	112 - 202	1e-09	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	773
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	3 cut(s)	540, 1134, 1561
AccII	CGCG	1 cut(s)	1702
AciI	CCGC	8 cut(s)	121, 836, 1088, 1700, 1702, 1953, 2129, 2268
AcoI	YGGCCR	5 cut(s)	581, 1611, 1876, 2157, 2233
AcsI	RAATTY	6 cut(s)	958, 1026, 1430, 1484, 1641, 1868
AcuI	CTGAAG	2 cut(s)	1293, 2481
AcvI	CACGTG	1 cut(s)	417
AfaI	GTAC	5 cut(s)	410, 555, 1086, 1709, 2169
AfiI	CCNNNNNNNGG	3 cut(s)	328, 623, 1688
AflIII	ACRYGT	1 cut(s)	2119
AjiI	CACGTC	1 cut(s)	1039
AjnI	CCWGG	6 cut(s)	664, 701, 1813, 1969, 2455, 2463
AjuI	GAANNNNNNNTTGG	4 cut(s)	1151, 1183, 1323, 1355
AloI	GAACNNNNNNTCC	6 cut(s)	245, 277, 622, 654, 1655, 1687
AluBI	AGCT	8 cut(s)	371, 919, 1540, 1788, 1887, 2114, 2273, 2501
AluI	AGCT	8 cut(s)	371, 919, 1540, 1788, 1887, 2114, 2273, 2501
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	3 cut(s)	701, 1206, 2132
AlwNI	CAGNNNCTG	1 cut(s)	562
Ama87I	CYCGRG	1 cut(s)	1185
AoxI	GGCC	8 cut(s)	581, 969, 1117, 1611, 1798, 1876, 2157, 2233
ApeKI	GCWGC	7 cut(s)	287, 698, 1730, 1785, 2186, 2270, 2393
ApoI	RAATTY	6 cut(s)	958, 1026, 1430, 1484, 1641, 1868
Asp700I	GAANNNNTTC	2 cut(s)	1932, 2121
AspLEI	GCGC	2 cut(s)	2371, 2443
AspS9I	GGNCC	3 cut(s)	1117, 1223, 1799
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	6 cut(s)	36, 110, 150, 230, 594, 1985
AsuII	TTCGAA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	1185
AvaII	GGWCC	1 cut(s)	1223
AxyI	CCTNAGG	1 cut(s)	1659
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	5 cut(s)	583, 1613, 1878, 2159, 2235
BamHI	GGATCC	2 cut(s)	807, 2459
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	2028
BbrPI	CACGTG	1 cut(s)	417
BbsI	GAAGAC	3 cut(s)	667, 1338, 2355
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	7 cut(s)	274, 710, 1742, 1797, 2173, 2282, 2380
BccI	CCATC	7 cut(s)	398, 616, 797, 1223, 1622, 1810, 2009
BceAI	ACGGC	1 cut(s)	1813
BcgI	CGANNNNNNTGC	4 cut(s)	260, 294, 1754, 1788
BciT130I	CCWGG	6 cut(s)	666, 703, 1815, 1971, 2457, 2465
BciVI	GTATCC	1 cut(s)	351
BclI	TGATCA	2 cut(s)	1111, 2049
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	3 cut(s)	701, 1206, 2132
BfaI	CTAG	6 cut(s)	900, 1139, 1317, 1892, 1983, 2244
BfmI	CTRYAG	2 cut(s)	2187, 2394
BfuAI	ACCTGC	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	9 cut(s)	288, 699, 1731, 1786, 1954, 2187, 2268, 2271, 2394
BlsI	GCNGC	9 cut(s)	289, 700, 1732, 1787, 1955, 2188, 2269, 2272, 2395
Bme1390I	CCNGG	7 cut(s)	329, 666, 703, 1815, 1971, 2457, 2465
Bme18I	GGWCC	1 cut(s)	1223
BmeT110I	CYCGRG	1 cut(s)	1185
BmgBI	CACGTC	1 cut(s)	1039
BmgT120I	GGNCC	3 cut(s)	1117, 1223, 1799
BmiI	GGNNCC	4 cut(s)	6, 739, 809, 2461
BmrFI	CCNGG	7 cut(s)	329, 666, 703, 1815, 1971, 2457, 2465
BpiI	GAAGAC	3 cut(s)	667, 1338, 2355
BplI	GAGNNNNNCTC	4 cut(s)	1405, 1437, 1450, 1482
BpmI	CTGGAG	1 cut(s)	2486
Bpu14I	TTCGAA	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	417
BsaBI	GATNNNNATC	2 cut(s)	339, 2068
BsaI	GGTCTC	1 cut(s)	701
BsaWI	WCCGGW	1 cut(s)	1388
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 1655, 1685
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 623, 1688
Bse118I	RCCGGY	1 cut(s)	1495
Bse1I	ACTGG	3 cut(s)	905, 958, 1614
Bse21I	CCTNAGG	1 cut(s)	1659
Bse3DI	GCAATG	2 cut(s)	1013, 2364
Bse8I	GATNNNNATC	2 cut(s)	339, 2068
BseBI	CCWGG	6 cut(s)	666, 703, 1815, 1971, 2457, 2465
BseGI	GGATG	7 cut(s)	463, 724, 1075, 1195, 1280, 1585, 1930
BseJI	GATNNNNATC	2 cut(s)	339, 2068
BseLI	CCNNNNNNNGG	3 cut(s)	328, 623, 1688
BseMI	GCAATG	2 cut(s)	1013, 2364
BseMII	CTCAG	3 cut(s)	1196, 1632, 2085
BseNI	ACTGG	3 cut(s)	905, 958, 1614
BseRI	GAGGAG	3 cut(s)	60, 145, 1222
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	7 cut(s)	274, 710, 1742, 1797, 2173, 2282, 2380
BsgI	GTGCAG	1 cut(s)	801
Bsh1236I	CGCG	1 cut(s)	1702
BshFI	GGCC	8 cut(s)	583, 971, 1119, 1613, 1800, 1878, 2159, 2235
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	1185
BsiSI	CCGG	3 cut(s)	329, 1389, 1496
BslFI	GGGAC	2 cut(s)	285, 2477
BslI	CCNNNNNNNGG	3 cut(s)	328, 623, 1688
BsmAI	GTCTC	3 cut(s)	701, 1206, 2132
BsmFI	GGGAC	2 cut(s)	285, 2477
BsmI	GAATGC	2 cut(s)	823, 1301
BsnI	GGCC	8 cut(s)	583, 971, 1119, 1613, 1800, 1878, 2159, 2235
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	1185
Bsp119I	TTCGAA	1 cut(s)	251
Bsp1286I	GDGCHC	3 cut(s)	297, 390, 2028
Bsp1407I	TGTACA	1 cut(s)	553
Bsp19I	CCATGG	3 cut(s)	231, 344, 2160
BspACI	CCGC	8 cut(s)	121, 836, 1088, 1700, 1702, 1953, 2129, 2268
BspANI	GGCC	8 cut(s)	583, 971, 1119, 1613, 1800, 1878, 2159, 2235
BspCNI	CTCAG	3 cut(s)	1197, 1631, 2086
BspFNI	CGCG	1 cut(s)	1702
BspHI	TCATGA	1 cut(s)	2011
BspLI	GGNNCC	4 cut(s)	6, 739, 809, 2461
BspMAI	CTGCAG	2 cut(s)	2191, 2398
BspMI	ACCTGC	1 cut(s)	773
BspT104I	TTCGAA	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	701
BsrDI	GCAATG	2 cut(s)	1013, 2364
BsrFI	RCCGGY	1 cut(s)	1495
BsrGI	TGTACA	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	905, 958, 1614
BssAI	RCCGGY	1 cut(s)	1495
BssNAI	GTATAC	1 cut(s)	541
BssT1I	CCWWGG	4 cut(s)	219, 231, 344, 2160
Bst1107I	GTATAC	1 cut(s)	541
Bst2UI	CCWGG	6 cut(s)	666, 703, 1815, 1971, 2457, 2465
Bst4CI	ACNGT	6 cut(s)	299, 592, 756, 1397, 2203, 2302
Bst6I	CTCTTC	6 cut(s)	58, 82, 136, 183, 348, 2325
BstAPI	GCANNNNNTGC	4 cut(s)	1181, 1253, 1918, 2276
BstAUI	TGTACA	1 cut(s)	553
BstBAI	YACGTR	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	5 cut(s)	581, 1079, 1532, 1889, 2265
BstDEI	CTNAG	4 cut(s)	1205, 1618, 1659, 2094
BstDSI	CCRYGG	4 cut(s)	231, 344, 1700, 2160
BstF5I	GGATG	7 cut(s)	463, 724, 1075, 1195, 1280, 1585, 1930
BstFNI	CGCG	1 cut(s)	1702
BstHHI	GCGC	2 cut(s)	2371, 2443
BstMAI	GTCTC	3 cut(s)	701, 1206, 2132
BstNI	CCWGG	6 cut(s)	666, 703, 1815, 1971, 2457, 2465
BstNSI	RCATGY	5 cut(s)	1085, 1921, 2123, 2197, 2263
BstSCI	CCNGG	7 cut(s)	327, 664, 701, 1813, 1969, 2455, 2463
BstSFI	CTRYAG	2 cut(s)	2187, 2394
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	1 cut(s)	1702
BstV1I	GCAGC	7 cut(s)	274, 710, 1742, 1797, 2173, 2282, 2380
BstV2I	GAAGAC	3 cut(s)	667, 1338, 2355
BstX2I	RGATCY	5 cut(s)	807, 881, 1858, 2314, 2459
BstYI	RGATCY	5 cut(s)	807, 881, 1858, 2314, 2459
BstZ17I	GTATAC	1 cut(s)	541
Bsu36I	CCTNAGG	1 cut(s)	1659
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	8 cut(s)	583, 971, 1119, 1613, 1800, 1878, 2159, 2235
BtgI	CCRYGG	4 cut(s)	231, 344, 1700, 2160
BtrI	CACGTC	1 cut(s)	1039
BtsCI	GGATG	7 cut(s)	463, 724, 1075, 1195, 1280, 1585, 1930
BtsI	GCAGTG	1 cut(s)	2443
BtsIMutI	CAGTG	3 cut(s)	584, 2199, 2443
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	5 cut(s)	581, 1079, 1532, 1889, 2265
CaiI	CAGNNNCTG	1 cut(s)	562
CciI	TCATGA	1 cut(s)	2011
CfoI	GCGC	2 cut(s)	2371, 2443
Cfr10I	RCCGGY	1 cut(s)	1495
Cfr13I	GGNCC	3 cut(s)	1117, 1223, 1799
Cfr42I	CCGCGG	1 cut(s)	1703
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	5 cut(s)	409, 554, 1085, 1708, 2168
CviQI	GTAC	5 cut(s)	409, 554, 1085, 1708, 2168
DdeI	CTNAG	4 cut(s)	1205, 1618, 1659, 2094
EaeI	YGGCCR	5 cut(s)	581, 1611, 1876, 2157, 2233
Eam1104I	CTCTTC	6 cut(s)	58, 82, 136, 183, 348, 2325
EarI	CTCTTC	6 cut(s)	58, 82, 136, 183, 348, 2325
Eco130I	CCWWGG	4 cut(s)	219, 231, 344, 2160
Eco24I	GRGCYC	1 cut(s)	2028
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	1223
Eco57I	CTGAAG	2 cut(s)	1293, 2481
Eco72I	CACGTG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	1659
Eco88I	CYCGRG	1 cut(s)	1185
EcoRI	GAATTC	2 cut(s)	1026, 1430
EcoRII	CCWGG	6 cut(s)	664, 701, 1813, 1969, 2455, 2463
EcoT14I	CCWWGG	4 cut(s)	219, 231, 344, 2160
EcoT22I	ATGCAT	3 cut(s)	1013, 1177, 2281
EcoT38I	GRGCYC	1 cut(s)	2028
ErhI	CCWWGG	4 cut(s)	219, 231, 344, 2160
FalI	AAGNNNNNCTT	4 cut(s)	1323, 1355, 1661, 1693
FaqI	GGGAC	2 cut(s)	285, 2477
FauI	CCCGC	1 cut(s)	1695
FauNDI	CATATG	1 cut(s)	2284
FbaI	TGATCA	2 cut(s)	1111, 2049
FblI	GTMKAC	3 cut(s)	540, 1134, 1561
Fnu4HI	GCNGC	9 cut(s)	288, 699, 1731, 1786, 1954, 2187, 2268, 2271, 2394
FokI	GGATG	7 cut(s)	470, 731, 1082, 1202, 1267, 1592, 1937
FriOI	GRGCYC	1 cut(s)	2028
Fsp4HI	GCNGC	9 cut(s)	288, 699, 1731, 1786, 1954, 2187, 2268, 2271, 2394
FspBI	CTAG	6 cut(s)	900, 1139, 1317, 1892, 1983, 2244
GlaI	GCGC	2 cut(s)	2370, 2442
GluI	GCNGC	9 cut(s)	288, 699, 1731, 1786, 1954, 2187, 2268, 2271, 2394
GsuI	CTGGAG	1 cut(s)	2486
HaeIII	GGCC	8 cut(s)	583, 971, 1119, 1613, 1800, 1878, 2159, 2235
HapII	CCGG	3 cut(s)	329, 1389, 1496
HgaI	GACGC	1 cut(s)	815
HhaI	GCGC	2 cut(s)	2371, 2443
Hin6I	GCGC	2 cut(s)	2369, 2441
HinP1I	GCGC	2 cut(s)	2369, 2441
HincII	GTYRAC	2 cut(s)	774, 1562
HindII	GTYRAC	2 cut(s)	774, 1562
HindIII	AAGCTT	1 cut(s)	1538
HinfI	GANTC	5 cut(s)	446, 860, 913, 1268, 2383
HpaII	CCGG	3 cut(s)	329, 1389, 1496
HphI	GGTGA	6 cut(s)	36, 110, 150, 230, 594, 1985
Hpy166II	GTNNAC	5 cut(s)	541, 774, 999, 1135, 1562
Hpy8I	GTNNAC	5 cut(s)	541, 774, 999, 1135, 1562
Hpy99I	CGWCG	1 cut(s)	1043
HpyCH4III	ACNGT	6 cut(s)	299, 592, 756, 1397, 2203, 2302
HpyCH4IV	ACGT	3 cut(s)	416, 432, 1038
HpyF3I	CTNAG	4 cut(s)	1205, 1618, 1659, 2094
HpySE526I	ACGT	3 cut(s)	416, 432, 1038
HspAI	GCGC	2 cut(s)	2369, 2441
Ksp22I	TGATCA	2 cut(s)	1111, 2049
KspI	CCGCGG	1 cut(s)	1703
LmnI	GCTCC	3 cut(s)	737, 838, 1298
Lsp1109I	GCAGC	7 cut(s)	274, 710, 1742, 1797, 2173, 2282, 2380
MaeI	CTAG	6 cut(s)	900, 1139, 1317, 1892, 1983, 2244
MaeII	ACGT	3 cut(s)	416, 432, 1038
MaeIII	GTNAC	3 cut(s)	428, 1391, 1397
MfeI	CAATTG	2 cut(s)	747, 1902
MflI	RGATCY	5 cut(s)	807, 881, 1858, 2314, 2459
MhlI	GDGCHC	3 cut(s)	297, 390, 2028
MlsI	TGGCCA	5 cut(s)	583, 1613, 1878, 2159, 2235
MluNI	TGGCCA	5 cut(s)	583, 1613, 1878, 2159, 2235
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	3 cut(s)	924, 1021, 2342
Mox20I	TGGCCA	5 cut(s)	583, 1613, 1878, 2159, 2235
Mph1103I	ATGCAT	3 cut(s)	1013, 1177, 2281
MroXI	GAANNNNTTC	2 cut(s)	1932, 2121
MscI	TGGCCA	5 cut(s)	583, 1613, 1878, 2159, 2235
MseI	TTAA	5 cut(s)	672, 1362, 1962, 2147, 2174
MslI	CAYNNNNRTG	2 cut(s)	1578, 2159
Msp20I	TGGCCA	5 cut(s)	583, 1613, 1878, 2159, 2235
MspA1I	CMGCKG	3 cut(s)	919, 1702, 1887
MspI	CCGG	3 cut(s)	329, 1389, 1496
MspR9I	CCNGG	7 cut(s)	329, 666, 703, 1815, 1971, 2457, 2465
MunI	CAATTG	2 cut(s)	747, 1902
Mva1269I	GAATGC	2 cut(s)	823, 1301
MvaI	CCWGG	6 cut(s)	666, 703, 1815, 1971, 2457, 2465
MvnI	CGCG	1 cut(s)	1702
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	3 cut(s)	231, 344, 2160
NdeI	CATATG	1 cut(s)	2284
NlaIV	GGNNCC	4 cut(s)	6, 739, 809, 2461
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	428, 1397
NsiI	ATGCAT	3 cut(s)	1013, 1177, 2281
NspI	RCATGY	5 cut(s)	1085, 1921, 2123, 2197, 2263
NspV	TTCGAA	1 cut(s)	251
PagI	TCATGA	1 cut(s)	2011
PciI	ACATGT	1 cut(s)	2119
PctI	GAATGC	2 cut(s)	823, 1301
PdmI	GAANNNNTTC	2 cut(s)	1932, 2121
PfeI	GAWTC	4 cut(s)	860, 913, 1268, 2383
PkrI	GCNGC	9 cut(s)	289, 700, 1732, 1787, 1955, 2188, 2269, 2272, 2395
PleI	GAGTC	1 cut(s)	454
PmaCI	CACGTG	1 cut(s)	417
PmlI	CACGTG	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	417
PscI	ACATGT	1 cut(s)	2119
Psp6I	CCWGG	6 cut(s)	664, 701, 1813, 1969, 2455, 2463
PspCI	CACGTG	1 cut(s)	417
PspGI	CCWGG	6 cut(s)	664, 701, 1813, 1969, 2455, 2463
PspN4I	GGNNCC	4 cut(s)	6, 739, 809, 2461
PspPI	GGNCC	3 cut(s)	1117, 1223, 1799
PstI	CTGCAG	2 cut(s)	2191, 2398
PstNI	CAGNNNCTG	1 cut(s)	562
PsuI	RGATCY	5 cut(s)	807, 881, 1858, 2314, 2459
PvuII	CAGCTG	2 cut(s)	919, 1887
RsaI	GTAC	5 cut(s)	410, 555, 1086, 1709, 2169
RsaNI	GTAC	5 cut(s)	409, 554, 1085, 1708, 2168
RseI	CAYNNNNRTG	2 cut(s)	1578, 2159
SacII	CCGCGG	1 cut(s)	1703
SalI	GTCGAC	1 cut(s)	1560
SaqAI	TTAA	5 cut(s)	672, 1362, 1962, 2147, 2174
SatI	GCNGC	9 cut(s)	288, 699, 1731, 1786, 1954, 2187, 2268, 2271, 2394
Sau96I	GGNCC	3 cut(s)	1117, 1223, 1799
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	7 cut(s)	329, 666, 703, 1815, 1971, 2457, 2465
SduI	GDGCHC	3 cut(s)	297, 390, 2028
SfcI	CTRYAG	2 cut(s)	2187, 2394
Sfr303I	CCGCGG	1 cut(s)	1703
SfuI	TTCGAA	1 cut(s)	251
SgrBI	CCGCGG	1 cut(s)	1703
SinI	GGWCC	1 cut(s)	1223
SmiMI	CAYNNNNRTG	2 cut(s)	1578, 2159
SsiI	CCGC	8 cut(s)	121, 836, 1088, 1700, 1702, 1953, 2129, 2268
SspI	AATATT	2 cut(s)	1516, 1932
SspMI	CTAG	6 cut(s)	900, 1139, 1317, 1892, 1983, 2244
StyD4I	CCNGG	7 cut(s)	327, 664, 701, 1813, 1969, 2455, 2463
StyI	CCWWGG	4 cut(s)	219, 231, 344, 2160
TaaI	ACNGT	6 cut(s)	299, 592, 756, 1397, 2203, 2302
TaiI	ACGT	3 cut(s)	419, 435, 1041
TaqI	TCGA	6 cut(s)	202, 251, 373, 444, 1561, 1774
TatI	WGTACW	2 cut(s)	553, 1707
TauI	GCSGC	2 cut(s)	1956, 2270
TfiI	GAWTC	4 cut(s)	860, 913, 1268, 2383
Tru1I	TTAA	5 cut(s)	672, 1362, 1962, 2147, 2174
Tru9I	TTAA	5 cut(s)	672, 1362, 1962, 2147, 2174
TscAI	CASTG	3 cut(s)	591, 2206, 2443
TseFI	GTSAC	2 cut(s)	428, 1397
TseI	GCWGC	7 cut(s)	287, 698, 1730, 1785, 2186, 2270, 2393
Tsp45I	GTSAC	2 cut(s)	428, 1397
TspDTI	ATGAA	7 cut(s)	115, 474, 990, 1443, 1668, 1881, 1941
TspRI	CASTG	3 cut(s)	591, 2206, 2443
VpaK11BI	GGWCC	1 cut(s)	1223
XapI	RAATTY	6 cut(s)	958, 1026, 1430, 1484, 1641, 1868
XceI	RCATGY	5 cut(s)	1085, 1921, 2123, 2197, 2263
XmiI	GTMKAC	3 cut(s)	540, 1134, 1561
XmnI	GAANNNNTTC	2 cut(s)	1932, 2121
XspI	CTAG	6 cut(s)	900, 1139, 1317, 1892, 1983, 2244
Zsp2I	ATGCAT	3 cut(s)	1013, 1177, 2281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.