RchiOBHm_Chr6g0277671

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001579
Physical Location & Seq
Reverse (-)
40190384 .. 40193052
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24910

Sequence Viewer

Length: 489 bp
ATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCTAAATGTGAATGTAGCTTTTATAACACATGACAAGGAGCTTATTGTACCCTTCTTTGACAAGATCCTTGGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTTGAGTCGGGGCGTCTGAAAGGTGTGACAACTAGAAACATTAGTGTGGAAGAAGCCAAAAGCTCAGCGGAAATGATGTTTGTAGGAAGCACACTGCCACTGTTGCCAATTATCGCGTGGGACGAACAGCCCGTTGGCGATGGGAAGGTGGGAGAATTGACAATGGCACTCTCTGATCTGGTGTGGGATGAGAAGGTAGCAGGATCTACTGAAACACAGAGGACAGCAGTTCCCTACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

162

Amino Acids

17.7

Weight (kDa)

4.78

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 6 - 121 6.4e-22 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AccII CGCG 1 cut(s) 362
AciI CCGC 1 cut(s) 314
AclWI GGATC 2 cut(s) 190, 457
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 259
AfaI GTAC 2 cut(s) 180, 211
AfiI CCNNNNNNNGG 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 4 cut(s) 71, 149, 172, 309
AluI AGCT 4 cut(s) 71, 149, 172, 309
AlwI GGATC 2 cut(s) 190, 457
BbsI GAAGAC 1 cut(s) 81
BccI CCATC 1 cut(s) 380
BfaI CTAG 2 cut(s) 233, 279
BlpI GCTNAGC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 112, 439
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 380
Bsp143I GATC 3 cut(s) 195, 421, 449
Bsp1720I GCTNAGC 1 cut(s) 310
BspACI CCGC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 323
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 2 cut(s) 190, 457
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 195, 421, 449
BssNI GRCGYC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 214, 348
BstACI GRCGYC 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 484
BstDEI CTNAG 1 cut(s) 310
BstF5I GGATG 2 cut(s) 112, 439
BstFNI CGCG 1 cut(s) 362
BstKTI GATC 3 cut(s) 198, 424, 452
BstMBI GATC 3 cut(s) 195, 421, 449
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstUI CGCG 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 195, 449
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 2 cut(s) 195, 449
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 112, 439
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 338, 344
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 179, 210
CviAII CATG 1 cut(s) 161
CviJI RGCY 8 cut(s) 71, 86, 149, 172, 223, 302, 309, 376
CviKI_1 RGCY 8 cut(s) 71, 86, 149, 172, 223, 302, 309, 376
CviQI GTAC 2 cut(s) 179, 210
DdeI CTNAG 1 cut(s) 310
DpnI GATC 3 cut(s) 197, 423, 451
DpnII GATC 3 cut(s) 195, 421, 449
Eco130I CCWWGG 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 164
FaiI YATR 5 cut(s) 98, 100, 122, 155, 162
FaqI GGGAC 1 cut(s) 380
FatI CATG 1 cut(s) 160
FauNDI CATATG 1 cut(s) 98
FokI GGATG 2 cut(s) 119, 446
FspBI CTAG 2 cut(s) 233, 279
HgaI GACGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 1 cut(s) 164
HinfI GANTC 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 48, 264, 421
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 6 cut(s) 53, 106, 122, 193, 385, 433
HpyCH4III ACNGT 2 cut(s) 214, 348
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 483
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 3 cut(s) 195, 421, 449
LmnI GCTCC 2 cut(s) 83, 169
LpnPI CCDG 3 cut(s) 24, 410, 432
MaeI CTAG 2 cut(s) 233, 279
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 3 cut(s) 6, 116, 271
MalI GATC 3 cut(s) 197, 423, 451
MboI GATC 3 cut(s) 195, 421, 449
MboII GAAGA 3 cut(s) 40, 86, 308
MflI RGATCY 2 cut(s) 195, 449
MluCI AATT 2 cut(s) 354, 401
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 1 cut(s) 459
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 2 cut(s) 101, 290
MspA1I CMGCKG 1 cut(s) 314
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeI CATATG 1 cut(s) 98
NdeII GATC 3 cut(s) 195, 421, 449
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 2 cut(s) 6, 271
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 375
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Ppu21I YACGTR 1 cut(s) 484
PsiI TTATAA 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 85
PsuI RGATCY 2 cut(s) 195, 449
RsaI GTAC 2 cut(s) 180, 211
RsaNI GTAC 2 cut(s) 179, 210
RseI CAYNNNNRTG 2 cut(s) 101, 290
SaqAI TTAA 1 cut(s) 218
Sau3AI GATC 3 cut(s) 195, 421, 449
SchI GAGTC 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 101, 290
Sse9I AATT 2 cut(s) 354, 401
SsiI CCGC 1 cut(s) 314
SspMI CTAG 2 cut(s) 233, 279
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 2 cut(s) 214, 348
TaiI ACGT 1 cut(s) 486
TasI AATT 2 cut(s) 354, 401
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 2 cut(s) 345, 351
TseFI GTSAC 2 cut(s) 6, 271
Tsp45I GTSAC 2 cut(s) 6, 271
TspDTI ATGAA 2 cut(s) 17, 41
TspRI CASTG 2 cut(s) 345, 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XspI CTAG 2 cut(s) 233, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.