FvH4_2g35980

Branched-chain-amino-acid aminotransferase-like protein 3

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
26446245 .. 26449012
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35980.t2

Sequence Viewer

Length: 1197 bp
ATGGCTTCCCTCCAATTTTTCTCTATACCCGTCTCGCGAAACCCACATATTACCAGAAAACCAGTTGAACATCCTTCACCTAGTTTGCGTCTAATTCCAAGAAACCTTGCATTTTTAGGACCTGGGTTACGTTATATTCACCACGGCTCAGCCAAAGATATCAAATCTATCAGAAGCTCGAACCGAACCGAAGCTGTGACTGATTACAGCATTCAAGTCTCTGATGTCCCACTGCTGACTAGCTCAGAGGCAATGGAAAGGCTAAAAATAAACCGCGAAAATCGAAAGGGTACACAAGAGTTTCTAGCCATGTATTCTAGCATTTTTGGAGGAATTACAACAGATCCAGCTGCTATGGTGATTCCTATTGATGATCACATGGTCCACAGAGGGCATGGGGTTTTCGACACTGCTGCTATAAGGGATGGATATTTGTACGAGCTGGACCAGCACATTGACCGTATTTTGAGGTCAGCATCCATGGCCAAAATTGGCCTAGCGTTTGATCGAGAAAGTATTAGGAGAATCCTCATACAAACAGTGAGTGCTTCTAAGTGCAAAACAGGATCACTAAGGTACTGGCTCTCGGCAGGACCTGGTGATTTTCAGTTATCTCCATCTGGCTGCGATCAGCCAGCTCTTTATGCTGTGGTAGTCCAAGACAAATCGCCTTTTAGTTCGAAGGGTGTTAAAGTAGTAACTTCGTCGATCCCTATAAAACCACCCCAATTTGCGGTTATGAAGAGTGTGAATTATCTTCCAAATGTGCTTTCAAAGATGGAGGCTGAAGAAAAAGGTGCCTTTGCAGCGATTTGGCTGGATGGTGACGGATTCATTGCCGAAGGCCCTAACATGAATGTGGCTTTTGTTACAAAAGATAAGGAACTTCTGATGCCTCCATTTGACAAAATACTTAGTGGCTGCACGGCTAAGCGAGTTTTGGCGCTTGCAGAAGGCCTGGTGAAGGAGGGTAAGCTTCAGGGAGTGAGAGTTGAAAATGTGACTGTTGAGGAAGGGAAGAAGGCAGTTGAGATGATGCTTATTGGCAGTGGAATTCTTGTTCGTCCTATAGTGCAATGGGACGAGCAGATCATTGGTGATGGCAAAGAAGGATCCTTGACTCAGATTCTCCTGAATCTTATCATCAAAGACATGGAATCCGGCCCCCTTACTGTTCGAACACCTATTCCTTACTAG

Protein Analysis

399

Amino Acids

43.71

Weight (kDa)

8.77

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 49 - 276 7.1e-46 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 797
AccII CGCG 2 cut(s) 37, 276
AciI CCGC 2 cut(s) 274, 734
AclWI GGATC 5 cut(s) 338, 574, 703, 1107, 1120
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 1 cut(s) 1053
AcuI CTGAAG 2 cut(s) 807, 962
AfaI GTAC 3 cut(s) 292, 437, 578
AfiI CCNNNNNNNGG 2 cut(s) 733, 964
AgsI TTSAA 4 cut(s) 68, 215, 774, 995
AjnI CCWGG 3 cut(s) 121, 595, 957
AjuI GAANNNNNNNTTGG 2 cut(s) 754, 786
AloI GAACNNNNNNTCC 3 cut(s) 1044, 1076, 1171
AluBI AGCT 7 cut(s) 177, 194, 243, 350, 442, 638, 976
AluI AGCT 7 cut(s) 177, 194, 243, 350, 442, 638, 976
Alw26I GTCTC 2 cut(s) 37, 223
AlwI GGATC 5 cut(s) 338, 574, 703, 1107, 1120
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 5 cut(s) 483, 493, 844, 955, 1162
ApeKI GCWGC 5 cut(s) 350, 413, 624, 806, 921
ApoI RAATTY 1 cut(s) 1053
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 6 cut(s) 119, 382, 445, 593, 845, 1163
AsuHPI GGTGA 7 cut(s) 69, 131, 370, 611, 836, 973, 1109
AsuII TTCGAA 2 cut(s) 680, 1177
AvaII GGWCC 4 cut(s) 119, 382, 445, 593
BalI TGGCCA 1 cut(s) 485
BamHI GGATCC 1 cut(s) 1112
BanI GGYRCC 1 cut(s) 797
BbvI GCAGC 5 cut(s) 337, 400, 611, 818, 908
BccI CCATC 5 cut(s) 419, 625, 772, 815, 1094
BceAI ACGGC 2 cut(s) 160, 942
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 3 cut(s) 123, 597, 959
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 37, 223
BfaI CTAG 6 cut(s) 81, 240, 305, 318, 497, 1195
BfmI CTRYAG 1 cut(s) 1068
BfoI RGCGCY 1 cut(s) 947
BisI GCNGC 5 cut(s) 351, 414, 625, 807, 922
BlpI GCTNAGC 2 cut(s) 148, 930
BlsI GCNGC 5 cut(s) 352, 415, 626, 808, 923
Bme1390I CCNGG 3 cut(s) 123, 597, 959
Bme18I GGWCC 4 cut(s) 119, 382, 445, 593
BmgT120I GGNCC 6 cut(s) 119, 382, 445, 593, 845, 1163
BmiI GGNNCC 3 cut(s) 799, 1114, 1165
BmrFI CCNGG 3 cut(s) 123, 597, 959
BmsI GCATC 3 cut(s) 485, 882, 1026
Bpu1102I GCTNAGC 2 cut(s) 148, 930
Bpu14I TTCGAA 2 cut(s) 680, 1177
BsaJI CCNNGG 3 cut(s) 122, 142, 480
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 2 cut(s) 733, 964
Bse1I ACTGG 2 cut(s) 62, 584
Bse3DI GCAATG 3 cut(s) 258, 834, 1082
BseBI CCWGG 3 cut(s) 123, 597, 959
BseDI CCNNGG 3 cut(s) 122, 142, 480
BseGI GGATG 4 cut(s) 70, 430, 476, 826
BseLI CCNNNNNNNGG 2 cut(s) 733, 964
BseMI GCAATG 3 cut(s) 258, 834, 1082
BseMII CTCAG 3 cut(s) 162, 258, 1136
BseNI ACTGG 2 cut(s) 62, 584
BseXI GCAGC 5 cut(s) 337, 400, 611, 818, 908
BsgI GTGCAG 1 cut(s) 907
Bsh1236I CGCG 2 cut(s) 37, 276
BshFI GGCC 5 cut(s) 485, 495, 846, 957, 1164
BshNI GGYRCC 1 cut(s) 797
BsiSI CCGG 1 cut(s) 1161
BslFI GGGAC 2 cut(s) 212, 1094
BslI CCNNNNNNNGG 2 cut(s) 733, 964
BsmAI GTCTC 2 cut(s) 37, 223
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 212, 1094
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 5 cut(s) 485, 495, 846, 957, 1164
Bsp119I TTCGAA 2 cut(s) 680, 1177
Bsp143I GATC 8 cut(s) 343, 373, 505, 566, 628, 708, 1089, 1112
Bsp1720I GCTNAGC 2 cut(s) 148, 930
Bsp19I CCATGG 1 cut(s) 480
Bsp68I TCGCGA 1 cut(s) 37
BspACI CCGC 2 cut(s) 274, 734
BspANI GGCC 5 cut(s) 485, 495, 846, 957, 1164
BspCNI CTCAG 3 cut(s) 161, 257, 1135
BspFNI CGCG 2 cut(s) 37, 276
BspLI GGNNCC 3 cut(s) 799, 1114, 1165
BspPI GGATC 5 cut(s) 338, 574, 703, 1107, 1120
BspT104I TTCGAA 2 cut(s) 680, 1177
BspT107I GGYRCC 1 cut(s) 797
BsrDI GCAATG 3 cut(s) 258, 834, 1082
BsrI ACTGG 2 cut(s) 62, 584
BssECI CCNNGG 3 cut(s) 122, 142, 480
BssMI GATC 8 cut(s) 343, 373, 505, 566, 628, 708, 1089, 1112
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 3 cut(s) 123, 597, 959
Bst4CI ACNGT 4 cut(s) 461, 541, 1006, 1174
Bst6I CTCTTC 1 cut(s) 737
BstBI TTCGAA 2 cut(s) 680, 1177
BstC8I GCNNGC 2 cut(s) 636, 948
BstDEI CTNAG 7 cut(s) 148, 244, 552, 572, 914, 930, 1122
BstDSI CCRYGG 2 cut(s) 142, 480
BstENI CCTNNNNNAGG 1 cut(s) 962
BstF5I GGATG 4 cut(s) 70, 430, 476, 826
BstFNI CGCG 2 cut(s) 37, 276
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 1 cut(s) 946
BstKTI GATC 8 cut(s) 346, 376, 508, 569, 631, 711, 1092, 1115
BstMAI GTCTC 2 cut(s) 37, 223
BstMBI GATC 8 cut(s) 343, 373, 505, 566, 628, 708, 1089, 1112
BstMWI GCNNNNNNNGC 4 cut(s) 448, 482, 644, 806
BstNI CCWGG 3 cut(s) 123, 597, 959
BstSCI CCNGG 3 cut(s) 121, 595, 957
BstSFI CTRYAG 1 cut(s) 1068
BstUI CGCG 2 cut(s) 37, 276
BstV1I GCAGC 5 cut(s) 337, 400, 611, 818, 908
BstX2I RGATCY 2 cut(s) 343, 1112
BstYI RGATCY 2 cut(s) 343, 1112
BsuRI GGCC 5 cut(s) 485, 495, 846, 957, 1164
BtgI CCRYGG 2 cut(s) 142, 480
BtsCI GGATG 4 cut(s) 70, 430, 476, 826
BtsI GCAGTG 3 cut(s) 230, 408, 1054
BtsIMutI CAGTG 4 cut(s) 230, 408, 546, 1054
BtuMI TCGCGA 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 636, 948
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 1 cut(s) 946
Cfr13I GGNCC 6 cut(s) 119, 382, 445, 593, 845, 1163
CseI GACGC 1 cut(s) 77
CsiI ACCWGGT 1 cut(s) 595
Csp6I GTAC 3 cut(s) 291, 436, 577
CviAII CATG 6 cut(s) 310, 379, 395, 481, 853, 1153
CviQI GTAC 3 cut(s) 291, 436, 577
DdeI CTNAG 7 cut(s) 148, 244, 552, 572, 914, 930, 1122
DpnI GATC 8 cut(s) 345, 375, 507, 568, 630, 710, 1091, 1114
DpnII GATC 8 cut(s) 343, 373, 505, 566, 628, 708, 1089, 1112
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
Eco130I CCWWGG 1 cut(s) 480
Eco147I AGGCCT 1 cut(s) 957
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 4 cut(s) 119, 382, 445, 593
Eco57I CTGAAG 2 cut(s) 807, 962
EcoNI CCTNNNNNAGG 1 cut(s) 962
EcoO109I RGGNCCY 3 cut(s) 119, 593, 845
EcoRI GAATTC 1 cut(s) 1053
EcoRII CCWGG 3 cut(s) 121, 595, 957
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 6 cut(s) 313, 382, 398, 484, 856, 1156
FaqI GGGAC 2 cut(s) 212, 1094
FatI CATG 6 cut(s) 309, 378, 394, 480, 852, 1152
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 5 cut(s) 351, 414, 625, 807, 922
FokI GGATG 4 cut(s) 57, 437, 463, 833
Fsp4HI GCNGC 5 cut(s) 351, 414, 625, 807, 922
FspBI CTAG 6 cut(s) 81, 240, 305, 318, 497, 1195
GlaI GCGC 1 cut(s) 945
GluI GCNGC 5 cut(s) 351, 414, 625, 807, 922
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 5 cut(s) 485, 495, 846, 957, 1164
HapII CCGG 1 cut(s) 1161
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 946
Hin1II CATG 6 cut(s) 313, 382, 398, 484, 856, 1156
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 7 cut(s) 361, 525, 831, 1120, 1126, 1135, 1157
HpaII CCGG 1 cut(s) 1161
HphI GGTGA 7 cut(s) 69, 131, 370, 611, 836, 973, 1109
Hpy166II GTNNAC 2 cut(s) 293, 385
Hpy188I TCNGA 5 cut(s) 173, 223, 247, 891, 1125
Hpy188III TCNNGA 3 cut(s) 36, 509, 1132
Hpy8I GTNNAC 2 cut(s) 293, 385
Hpy99I CGWCG 1 cut(s) 709
HpyAV CCTTC 8 cut(s) 84, 676, 836, 947, 958, 1007, 1015, 1103
HpyCH4III ACNGT 4 cut(s) 461, 541, 1006, 1174
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 6 cut(s) 110, 558, 806, 924, 950, 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 448, 482, 644, 806
HpyF3I CTNAG 7 cut(s) 148, 244, 552, 572, 914, 930, 1122
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 6 cut(s) 313, 382, 398, 484, 856, 1156
HspAI GCGC 1 cut(s) 944
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 8 cut(s) 343, 373, 505, 566, 628, 708, 1089, 1112
Lsp1109I GCAGC 5 cut(s) 337, 400, 611, 818, 908
LweI GCATC 3 cut(s) 485, 882, 1026
MabI ACCWGGT 1 cut(s) 595
MaeI CTAG 6 cut(s) 81, 240, 305, 318, 497, 1195
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 6 cut(s) 126, 196, 697, 824, 868, 1000
MalI GATC 8 cut(s) 345, 375, 507, 568, 630, 710, 1091, 1114
MboI GATC 8 cut(s) 343, 373, 505, 566, 628, 708, 1089, 1112
MboII GAAGA 4 cut(s) 749, 754, 800, 1030
MflI RGATCY 2 cut(s) 343, 1112
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 7 cut(s) 14, 93, 333, 489, 728, 751, 1053
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 1 cut(s) 1114
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MseI TTAA 1 cut(s) 690
MslI CAYNNNNRTG 1 cut(s) 857
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 1161
MspR9I CCNGG 3 cut(s) 123, 597, 959
Mva1269I GAATGC 1 cut(s) 210
MvaI CCWGG 3 cut(s) 123, 597, 959
MvnI CGCG 2 cut(s) 37, 276
MwoI GCNNNNNNNGC 4 cut(s) 448, 482, 644, 806
NcoI CCATGG 1 cut(s) 480
NdeII GATC 8 cut(s) 343, 373, 505, 566, 628, 708, 1089, 1112
NlaIII CATG 6 cut(s) 313, 382, 398, 484, 856, 1156
NlaIV GGNNCC 3 cut(s) 799, 1114, 1165
NmeAIII GCCGAG 1 cut(s) 566
NmuCI GTSAC 3 cut(s) 196, 824, 1000
NruI TCGCGA 1 cut(s) 37
NspV TTCGAA 2 cut(s) 680, 1177
PceI AGGCCT 1 cut(s) 957
PctI GAATGC 1 cut(s) 210
PfeI GAWTC 6 cut(s) 361, 525, 831, 1126, 1135, 1157
PkrI GCNGC 5 cut(s) 352, 415, 626, 808, 923
PleI GAGTC 1 cut(s) 1114
PpsI GAGTC 1 cut(s) 1114
PpuMI RGGWCCY 2 cut(s) 119, 593
Psp5II RGGWCCY 2 cut(s) 119, 593
Psp6I CCWGG 3 cut(s) 121, 595, 957
PspGI CCWGG 3 cut(s) 121, 595, 957
PspN4I GGNNCC 3 cut(s) 799, 1114, 1165
PspPI GGNCC 6 cut(s) 119, 382, 445, 593, 845, 1163
PspPPI RGGWCCY 2 cut(s) 119, 593
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 2 cut(s) 343, 1112
PvuII CAGCTG 1 cut(s) 350
RruI TCGCGA 1 cut(s) 37
RsaI GTAC 3 cut(s) 292, 437, 578
RsaNI GTAC 3 cut(s) 291, 436, 577
RseI CAYNNNNRTG 1 cut(s) 857
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 5 cut(s) 351, 414, 625, 807, 922
Sau3AI GATC 8 cut(s) 343, 373, 505, 566, 628, 708, 1089, 1112
Sau96I GGNCC 6 cut(s) 119, 382, 445, 593, 845, 1163
SchI GAGTC 1 cut(s) 1114
ScrFI CCNGG 3 cut(s) 123, 597, 959
SexAI ACCWGGT 1 cut(s) 595
SfaNI GCATC 3 cut(s) 485, 882, 1026
SfcI CTRYAG 1 cut(s) 1068
SfuI TTCGAA 2 cut(s) 680, 1177
SinI GGWCC 4 cut(s) 119, 382, 445, 593
SmiMI CAYNNNNRTG 1 cut(s) 857
Sse9I AATT 7 cut(s) 14, 93, 333, 489, 728, 751, 1053
SseBI AGGCCT 1 cut(s) 957
SsiI CCGC 2 cut(s) 274, 734
SspMI CTAG 6 cut(s) 81, 240, 305, 318, 497, 1195
StuI AGGCCT 1 cut(s) 957
StyD4I CCNGG 3 cut(s) 121, 595, 957
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 4 cut(s) 461, 541, 1006, 1174
TaiI ACGT 1 cut(s) 133
TaqI TCGA 7 cut(s) 179, 283, 405, 508, 680, 707, 1177
TasI AATT 7 cut(s) 14, 93, 333, 489, 728, 751, 1053
TfiI GAWTC 6 cut(s) 361, 525, 831, 1126, 1135, 1157
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 4 cut(s) 237, 415, 546, 1054
TseFI GTSAC 3 cut(s) 196, 824, 1000
TseI GCWGC 5 cut(s) 350, 413, 624, 806, 921
Tsp45I GTSAC 3 cut(s) 196, 824, 1000
TspDTI ATGAA 3 cut(s) 755, 823, 869
TspGWI ACGGA 1 cut(s) 843
TspRI CASTG 4 cut(s) 237, 415, 546, 1054
VpaK11BI GGWCC 4 cut(s) 119, 382, 445, 593
XagI CCTNNNNNAGG 1 cut(s) 962
XapI RAATTY 1 cut(s) 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XspI CTAG 6 cut(s) 81, 240, 305, 318, 497, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.