Rmu_sc0002818.1_g000006

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002818.1
OG0001579
Physical Location & Seq
Reverse (-)
48619 .. 49547
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002818.1_g000006.1.cds

Sequence Viewer

Length: 813 bp
atgagcttgagttgtgaatttaattttgattcctgcagatacctgtatgagctggatgtccatctaaaccgcttcctcagatcagcttcaaaagcaaggatcccctctccctttgatcggtcaactcttcggagcattcttgtgcaactggcggcagcatcacagatcaagaaaggaactctaagatattggatgagtgccggtcctggtgattttttgctccaacctacagggtgcccaacatctgcattctatgcagtagtcattgatgaggacttcaatcagtgcaaagaaggggttaaagtgatcacttcctctattcccatgaagtcaccagaaatggcgacaatgaagaatgtgaactaccttccgaatatccttgcaaaaatggaagctgaagacaaaggagcctttgcttccatatgggtggatgagaagggttacatagcagaaggtccaaatgtgaatgtagcttttataacacatgacaaggagcttattgtacccttctttgacaagatccttagtggttgtaccgtgttaaggcttcttgaactagcacccaagttggttgagtcggggcgtctgaaaggtgtgacaactagaaacattagtgtggaagaagccaaaagctcagcggaaatgatgtttgtaggaagcacactgccactgttgccaattatcgcgtgggatgaacagcccgttggcgatgggaaggtgggagaattgacaatggcactctccgatctggtgtgggatgatatggtagcaggatctactgaaacacagaggacagcagttccctacgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

270

Amino Acids

29.77

Weight (kDa)

5.13

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 234
AccII CGCG 1 cut(s) 686
AciI CCGC 3 cut(s) 70, 152, 638
AclWI GGATC 4 cut(s) 94, 107, 514, 781
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 583
AfaI GTAC 2 cut(s) 504, 535
AfiI CCNNNNNNNGG 2 cut(s) 117, 543
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 3 cut(s) 90, 280, 554
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AluBI AGCT 7 cut(s) 6, 52, 86, 395, 473, 496, 633
AluI AGCT 7 cut(s) 6, 52, 86, 395, 473, 496, 633
AlwI GGATC 4 cut(s) 94, 107, 514, 781
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 203, 455
AsuHPI GGTGA 2 cut(s) 221, 324
AvaII GGWCC 2 cut(s) 203, 455
BaeGI GKGCMC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 167
BccI CCATC 2 cut(s) 69, 704
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 1 cut(s) 306
BfaI CTAG 2 cut(s) 557, 603
BfmI CTRYAG 2 cut(s) 34, 228
BisI GCNGC 2 cut(s) 153, 156
BlpI GCTNAGC 1 cut(s) 634
BlsI GCNGC 2 cut(s) 154, 157
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 203, 455
BmgT120I GGNCC 2 cut(s) 203, 455
BmiI GGNNCC 3 cut(s) 101, 236, 409
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 634
BpuEI CTTGAG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 808
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 583
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 543
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 5 cut(s) 61, 198, 436, 697, 763
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 117, 543
BseMII CTCAG 2 cut(s) 91, 648
BseNI ACTGG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 686
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 117, 543
BsmI GAATGC 2 cut(s) 135, 248
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 8 cut(s) 80, 99, 115, 165, 306, 519, 745, 773
Bsp1720I GCTNAGC 1 cut(s) 634
BspACI CCGC 3 cut(s) 70, 152, 638
BspCNI CTCAG 2 cut(s) 90, 647
BspFNI CGCG 1 cut(s) 686
BspLI GGNNCC 3 cut(s) 101, 236, 409
BspMAI CTGCAG 1 cut(s) 38
BspPI GGATC 4 cut(s) 94, 107, 514, 781
BspT107I GGYRCC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 8 cut(s) 80, 99, 115, 165, 306, 519, 745, 773
BssNI GRCGYC 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 538, 672
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 583
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 808
BstDEI CTNAG 4 cut(s) 77, 182, 524, 634
BstF5I GGATG 5 cut(s) 61, 198, 436, 697, 763
BstFNI CGCG 1 cut(s) 686
BstKTI GATC 8 cut(s) 83, 102, 118, 168, 309, 522, 748, 776
BstMBI GATC 8 cut(s) 80, 99, 115, 165, 306, 519, 745, 773
BstMWI GCNNNNNNNGC 3 cut(s) 92, 254, 673
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 2 cut(s) 34, 228
BstSLI GKGCMC 1 cut(s) 239
BstUI CGCG 1 cut(s) 686
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 3 cut(s) 99, 519, 773
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 3 cut(s) 99, 519, 773
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 5 cut(s) 61, 198, 436, 697, 763
BtsI GCAGTG 1 cut(s) 662
BtsIMutI CAGTG 3 cut(s) 290, 662, 668
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 203, 455
CseI GACGC 1 cut(s) 572
Csp6I GTAC 2 cut(s) 503, 534
CviAII CATG 2 cut(s) 325, 485
CviQI GTAC 2 cut(s) 503, 534
DdeI CTNAG 4 cut(s) 77, 182, 524, 634
DpnI GATC 8 cut(s) 82, 101, 117, 167, 308, 521, 747, 775
DpnII GATC 8 cut(s) 80, 99, 115, 165, 306, 519, 745, 773
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 203, 455
Eco57I CTGAAG 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 2 cut(s) 328, 488
FaiI YATR 9 cut(s) 48, 255, 326, 422, 424, 446, 479, 486, 764
FatI CATG 2 cut(s) 324, 484
FauNDI CATATG 1 cut(s) 422
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 153, 156
FokI GGATG 5 cut(s) 68, 205, 443, 704, 770
Fsp4HI GCNGC 2 cut(s) 153, 156
FspBI CTAG 2 cut(s) 557, 603
GluI GCNGC 2 cut(s) 153, 156
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 572
Hin1I GRCGYC 1 cut(s) 583
Hin1II CATG 2 cut(s) 328, 488
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 2 cut(s) 29, 575
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 221, 324
Hpy166II GTNNAC 2 cut(s) 123, 361
Hpy188I TCNGA 5 cut(s) 80, 132, 372, 588, 745
Hpy188III TCNNGA 2 cut(s) 169, 551
Hpy8I GTNNAC 2 cut(s) 123, 361
HpyAV CCTTC 6 cut(s) 287, 377, 430, 446, 517, 709
HpyCH4III ACNGT 2 cut(s) 538, 672
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 6 cut(s) 36, 145, 248, 257, 288, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 254, 673
HpyF3I CTNAG 4 cut(s) 77, 182, 524, 634
HpySE526I ACGT 1 cut(s) 807
Hsp92I GRCGYC 1 cut(s) 583
Hsp92II CATG 2 cut(s) 328, 488
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 8 cut(s) 80, 99, 115, 165, 306, 519, 745, 773
LmnI GCTCC 4 cut(s) 132, 225, 407, 493
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 167
MaeI CTAG 2 cut(s) 557, 603
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 3 cut(s) 330, 440, 595
MalI GATC 8 cut(s) 82, 101, 117, 167, 308, 521, 747, 775
MboI GATC 8 cut(s) 80, 99, 115, 165, 306, 519, 745, 773
MboII GAAGA 4 cut(s) 119, 364, 410, 632
MflI RGATCY 3 cut(s) 99, 519, 773
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 4 cut(s) 17, 22, 678, 725
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 5 cut(s) 86, 115, 265, 325, 783
MseI TTAA 3 cut(s) 21, 300, 542
MslI CAYNNNNRTG 3 cut(s) 140, 425, 614
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 135, 248
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 3 cut(s) 92, 254, 673
NdeI CATATG 1 cut(s) 422
NdeII GATC 8 cut(s) 80, 99, 115, 165, 306, 519, 745, 773
NlaIII CATG 2 cut(s) 328, 488
NlaIV GGNNCC 3 cut(s) 101, 236, 409
NmuCI GTSAC 2 cut(s) 330, 595
PctI GAATGC 2 cut(s) 135, 248
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 154, 157
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
Ppu21I YACGTR 1 cut(s) 808
PsiI TTATAA 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 101, 236, 409
PspPI GGNCC 2 cut(s) 203, 455
PstI CTGCAG 1 cut(s) 38
PsuI RGATCY 3 cut(s) 99, 519, 773
RsaI GTAC 2 cut(s) 504, 535
RsaNI GTAC 2 cut(s) 503, 534
RseI CAYNNNNRTG 3 cut(s) 140, 425, 614
SaqAI TTAA 3 cut(s) 21, 300, 542
SatI GCNGC 2 cut(s) 153, 156
Sau3AI GATC 8 cut(s) 80, 99, 115, 165, 306, 519, 745, 773
Sau96I GGNCC 2 cut(s) 203, 455
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 2 cut(s) 34, 228
SinI GGWCC 2 cut(s) 203, 455
SmiMI CAYNNNNRTG 3 cut(s) 140, 425, 614
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 4 cut(s) 17, 22, 678, 725
SsiI CCGC 3 cut(s) 70, 152, 638
SspMI CTAG 2 cut(s) 557, 603
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 538, 672
TaiI ACGT 1 cut(s) 810
TaqII GACCGA 1 cut(s) 108
TasI AATT 4 cut(s) 17, 22, 678, 725
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 21, 300, 542
Tru9I TTAA 3 cut(s) 21, 300, 542
TscAI CASTG 3 cut(s) 290, 669, 675
TseFI GTSAC 2 cut(s) 330, 595
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 2 cut(s) 330, 595
TspDTI ATGAA 3 cut(s) 341, 365, 708
TspRI CASTG 3 cut(s) 290, 669, 675
VpaK11BI GGWCC 2 cut(s) 203, 455
XapI RAATTY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 684
XspI CTAG 2 cut(s) 557, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.