Prupe.4G174300_v2.0.a1

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001579
Physical Location & Seq
Reverse (-)
10313706 .. 10316776
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G174300.1

Sequence Viewer

Length: 1050 bp
ATGGCAAGCTACAGCCCTTGTACTGACCAGAAATCAGACACATTGGATGCTGGAAATGTCGAGGATTTCAAAGTTCATGTGTTTAAATCATCATCCGAGTTGCTTGAAAAGCTGCATGAGAAGTGGAGCAAGGTTGAAAAACAACCATACCCAGCCATGTATTCCAGCACTTATGGTGGAATTATTCTTGATCCAGCTTTGATGGTAATTCCAATAGATGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCGATTATCTTAAATGGGTTCATCTATGAACTGGACGTCCACCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAAGATTTCCTCTCCCTTCCCTCGATCAACTCTTCAAAGCATTCTTGTGCAACTGGCTGCAGCATCACAGATCAAGAAAGGAACTCTAAGATATTGGTTGAGTGCAGGTCCTGGAAACTTCTTGCTCACGCCTGCAGAGTCCTCAACACCAGCGTTCTATGCAGTAGTCATCGATGAGAACTTTTCTCAGTGCAAAGAGGGAGTTAAAGTGATTACATCCACTATTCCCATGAAGTCACCAGACTTTGCAACAATGAAGAATGTAAACTACCTTCCAAATGTCCTTTCAAAGTTGGAAGCTGAAGAGAAGGGAGCCTTTGCTTCCATATGGGTTGATGAGGAAGGTTATATAGCAGAAGGTCCAAATGTGAATGTTGCTTTTATAACTCATGACAAGGAGCTTGTAGTACCCTTCTTTGATAAGATCCTTAGCGGGTGTACTGTGCTAAGACTTCTTGAACTAGCACCAAAACTGGTTGAGCAGGGGCGGCTAAAAGGGGTGAAAACTACAAATCTTACTGTGGAAGAAGCCAAAAGCTCAGCTGAAATGATGTTTGTAGGAAGCACACTTCCTGTTTTGCCAATTATCACATGGGACGAACAACCCATCGGAGATGGAAAGGTGGGAGAACTGACAATGGCACTCTCAGATCTGGTTTGGGAGGATATGGTAGCAGGCCCAACTGGTACGCAGAGGATAGCTGTTCCCTACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

350

Amino Acids

38.38

Weight (kDa)

5.27

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AatII GACGTC 1 cut(s) 297
Acc36I ACCTGC 1 cut(s) 428
AciI CCGC 3 cut(s) 307, 765, 820
AclWI GGATC 2 cut(s) 185, 751
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 4 cut(s) 22, 741, 772, 1021
AgsI TTSAA 7 cut(s) 70, 107, 137, 327, 368, 621, 791
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 601, 633
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 9 cut(s) 9, 112, 197, 323, 632, 733, 870, 875, 1034
AluI AGCT 9 cut(s) 9, 112, 197, 323, 632, 733, 870, 875, 1034
AlwI GGATC 2 cut(s) 185, 751
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 2 cut(s) 238, 1009
ApeKI GCWGC 3 cut(s) 112, 389, 392
AspS9I GGNCC 3 cut(s) 440, 692, 1010
AsuHPI GGTGA 2 cut(s) 561, 844
AvaII GGWCC 2 cut(s) 440, 692
BarI GAAGNNNNNNTAC 2 cut(s) 588, 620
BbvI GCAGC 3 cut(s) 99, 376, 404
BccI CCATC 3 cut(s) 196, 941, 947
BciT130I CCWGG 1 cut(s) 444
BclI TGATCA 1 cut(s) 220
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 3 cut(s) 10, 390, 465
BfuAI ACCTGC 1 cut(s) 428
BglII AGATCT 1 cut(s) 982
BisI GCNGC 4 cut(s) 113, 390, 393, 821
BlpI GCTNAGC 1 cut(s) 871
BlsI GCNGC 4 cut(s) 114, 391, 394, 822
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 2 cut(s) 440, 692
BmgT120I GGNCC 3 cut(s) 440, 692, 1010
BmiI GGNNCC 1 cut(s) 646
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 37, 404
Bpu10I CCTNAGC 1 cut(s) 761
Bpu1102I GCTNAGC 1 cut(s) 871
Bsa29I ATCGAT 1 cut(s) 504
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bse1I ACTGG 4 cut(s) 294, 390, 810, 1021
BseBI CCWGG 1 cut(s) 444
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 3 cut(s) 52, 92, 548
BseMII CTCAG 4 cut(s) 328, 533, 885, 993
BseNI ACTGG 4 cut(s) 294, 390, 810, 1021
BseXI GCAGC 3 cut(s) 99, 376, 404
BseYI CCCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 2 cut(s) 240, 1011
BshVI ATCGAT 1 cut(s) 504
BslFI GGGAC 1 cut(s) 941
BsmFI GGGAC 1 cut(s) 941
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 2 cut(s) 240, 1011
Bsp143I GATC 7 cut(s) 190, 220, 317, 356, 402, 756, 982
Bsp1720I GCTNAGC 1 cut(s) 871
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 3 cut(s) 307, 765, 820
BspANI GGCC 2 cut(s) 240, 1011
BspCNI CTCAG 4 cut(s) 327, 532, 884, 992
BspDI ATCGAT 1 cut(s) 504
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 646
BspMAI CTGCAG 2 cut(s) 394, 469
BspMI ACCTGC 1 cut(s) 428
BspPI GGATC 2 cut(s) 185, 751
BsrI ACTGG 4 cut(s) 294, 390, 810, 1021
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 7 cut(s) 190, 220, 317, 356, 402, 756, 982
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 775, 853
Bst6I CTCTTC 2 cut(s) 369, 630
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 7, 465, 1009
BstDEI CTNAG 7 cut(s) 314, 419, 519, 761, 779, 871, 979
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 3 cut(s) 52, 92, 548
BstKTI GATC 7 cut(s) 193, 223, 320, 359, 405, 759, 985
BstMBI GATC 7 cut(s) 190, 220, 317, 356, 402, 756, 982
BstMWI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 820
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 3 cut(s) 10, 390, 465
BstV1I GCAGC 3 cut(s) 99, 376, 404
BstX2I RGATCY 2 cut(s) 756, 982
BstYI RGATCY 2 cut(s) 756, 982
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 2 cut(s) 240, 1011
BsuTUI ATCGAT 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 3 cut(s) 52, 92, 548
BtsIMutI CAGTG 1 cut(s) 527
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 3 cut(s) 7, 465, 1009
CaiI CAGNNNCTG 1 cut(s) 443
CciI TCATGA 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 440, 692, 1010
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 4 cut(s) 21, 740, 771, 1020
CviAII CATG 8 cut(s) 77, 116, 157, 226, 242, 562, 722, 924
CviQI GTAC 4 cut(s) 21, 740, 771, 1020
DdeI CTNAG 7 cut(s) 314, 419, 519, 761, 779, 871, 979
DpnI GATC 7 cut(s) 192, 222, 319, 358, 404, 758, 984
DpnII GATC 7 cut(s) 190, 220, 317, 356, 402, 756, 982
DraI TTTAAA 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 369, 630
EarI CTCTTC 2 cut(s) 369, 630
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 440, 692
Eco57I CTGAAG 1 cut(s) 654
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 927
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 1 cut(s) 941
FatI CATG 8 cut(s) 76, 115, 156, 225, 241, 561, 721, 923
FauI CCCGC 1 cut(s) 758
FauNDI CATATG 1 cut(s) 659
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 113, 390, 393, 821
FokI GGATG 3 cut(s) 59, 79, 535
Fsp4HI GCNGC 4 cut(s) 113, 390, 393, 821
FspBI CTAG 1 cut(s) 794
GluI GCNGC 4 cut(s) 113, 390, 393, 821
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 2 cut(s) 240, 1011
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 927
HinfI GANTC 1 cut(s) 470
HphI GGTGA 2 cut(s) 561, 844
Hpy166II GTNNAC 3 cut(s) 298, 598, 771
Hpy188I TCNGA 5 cut(s) 37, 97, 317, 944, 982
Hpy188III TCNNGA 4 cut(s) 188, 406, 722, 788
Hpy8I GTNNAC 3 cut(s) 298, 598, 771
HpyAV CCTTC 6 cut(s) 358, 614, 634, 668, 683, 754
HpyCH4III ACNGT 2 cut(s) 775, 853
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 8 cut(s) 115, 382, 392, 437, 467, 494, 525, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 820
HpyF3I CTNAG 7 cut(s) 314, 419, 519, 761, 779, 871, 979
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 927
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 7 cut(s) 190, 220, 317, 356, 402, 756, 982
LmnI GCTCC 3 cut(s) 126, 644, 730
Lsp1109I GCAGC 3 cut(s) 99, 376, 404
LweI GCATC 2 cut(s) 37, 404
MaeI CTAG 1 cut(s) 794
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 567
MalI GATC 7 cut(s) 192, 222, 319, 358, 404, 758, 984
MboI GATC 7 cut(s) 190, 220, 317, 356, 402, 756, 982
MboII GAAGA 4 cut(s) 356, 601, 647, 869
MflI RGATCY 2 cut(s) 756, 982
MluCI AATT 3 cut(s) 180, 207, 915
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 1 cut(s) 606
MseI TTAA 3 cut(s) 84, 269, 537
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 875
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 820
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 659
NdeII GATC 7 cut(s) 190, 220, 317, 356, 402, 756, 982
NlaIII CATG 8 cut(s) 80, 119, 160, 229, 245, 565, 725, 927
NlaIV GGNNCC 1 cut(s) 646
NmuCI GTSAC 1 cut(s) 567
PagI TCATGA 1 cut(s) 721
PctI GAATGC 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 4 cut(s) 114, 391, 394, 822
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 440
PsiI TTATAA 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 442
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 646
PspPI GGNCC 3 cut(s) 440, 692, 1010
PspPPI RGGWCCY 1 cut(s) 440
PstI CTGCAG 2 cut(s) 394, 469
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 2 cut(s) 756, 982
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 4 cut(s) 22, 741, 772, 1021
RsaNI GTAC 4 cut(s) 21, 740, 771, 1020
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 3 cut(s) 84, 269, 537
SatI GCNGC 4 cut(s) 113, 390, 393, 821
Sau3AI GATC 7 cut(s) 190, 220, 317, 356, 402, 756, 982
Sau96I GGNCC 3 cut(s) 440, 692, 1010
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 444
SfaNI GCATC 2 cut(s) 37, 404
SfcI CTRYAG 3 cut(s) 10, 390, 465
SinI GGWCC 2 cut(s) 440, 692
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 3 cut(s) 180, 207, 915
SsiI CCGC 3 cut(s) 307, 765, 820
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 775, 853
TaiI ACGT 1 cut(s) 297
TaqI TCGA 4 cut(s) 60, 235, 355, 504
TasI AATT 3 cut(s) 180, 207, 915
TatI WGTACW 2 cut(s) 20, 770
TauI GCSGC 1 cut(s) 823
Tru1I TTAA 3 cut(s) 84, 269, 537
Tru9I TTAA 3 cut(s) 84, 269, 537
TscAI CASTG 1 cut(s) 527
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 3 cut(s) 112, 389, 392
Tsp45I GTSAC 1 cut(s) 567
TspDTI ATGAA 6 cut(s) 65, 221, 268, 300, 578, 602
TspRI CASTG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 440, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 921
XspI CTAG 1 cut(s) 794
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.