pycom03g18150

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001579
Physical Location & Seq
Forward (+)
19170944 .. 19171521
578 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g18150.2

Sequence Viewer

Length: 426 bp
ATGAAGTCACCTGAATTTTCAACGATGAAGAATGTGAACTACCTTCCGAATGTCCTTGCAAAACTAGAAGCCGAAGAGAAGGGAGCAAATGCTTCTATATGGGTTGATGAGGAAGGATACATAGCAGAAGGTCCAAATGTGAATGTCGCTTTTATAACTCATGGCAAGGAGTTTATAGTACCCTTCTTCGATAAAATCCTTAGAGGGTGCACTGTGCTAGGGCTGCTTGAACTAGCACTGAAGTTGGTTGAGCAGGGACGTCTTAAAGCTGTGAGAACTGCAAATCTTACCGTGGAAGAAGCCAAAAGCTCAGCTGAAATGATGTATGTAGGAAGCACACTTCCTGTGTTGCCAATTATCGCATGGGATGAACAACCTATTGGAGATGGAAAGGTGGGAGAGTTGACAATGGCATTTCAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

142

Amino Acids

15.46

Weight (kDa)

4.83

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AatII GACGTC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 259
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 2 cut(s) 21, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 3 cut(s) 269, 309, 314
AluI AGCT 3 cut(s) 269, 309, 314
Alw21I GWGCWC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 208
ApaLI GTGCAC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 380
BciVI GTATCC 1 cut(s) 110
BfaI CTAG 4 cut(s) 65, 218, 233, 424
BfuI GTATCC 1 cut(s) 110
BglII AGATCT 1 cut(s) 420
BisI GCNGC 1 cut(s) 224
BlpI GCTNAGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 212
BslFI GGGAC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 420
Bsp1720I GCTNAGC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 420
BssNI GRCGYC 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 214, 292
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 200, 310
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 423
BstMBI GATC 1 cut(s) 420
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BsuI GTATCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 210, 236
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 179
CviAII CATG 2 cut(s) 161, 363
CviJI RGCY 6 cut(s) 71, 223, 269, 302, 309, 314
CviKI_1 RGCY 6 cut(s) 71, 223, 269, 302, 309, 314
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 2 cut(s) 200, 310
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 260
FaeI CATG 2 cut(s) 164, 366
FaiI YATR 8 cut(s) 98, 100, 122, 155, 162, 176, 327, 364
FaqI GGGAC 1 cut(s) 270
FatI CATG 2 cut(s) 160, 362
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 4 cut(s) 65, 218, 233, 424
GluI GCNGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 2 cut(s) 164, 366
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
Hpy166II GTNNAC 3 cut(s) 37, 210, 405
Hpy188I TCNGA 2 cut(s) 48, 420
Hpy8I GTNNAC 3 cut(s) 37, 210, 405
HpyAV CCTTC 5 cut(s) 53, 73, 107, 122, 193
HpyCH4III ACNGT 2 cut(s) 214, 292
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 3 cut(s) 59, 210, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 200, 310
HpySE526I ACGT 1 cut(s) 259
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 2 cut(s) 164, 366
Kzo9I GATC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 24, 239, 357
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 4 cut(s) 65, 218, 233, 424
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 1 cut(s) 6
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 4 cut(s) 40, 86, 178, 308
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 2 cut(s) 14, 354
MnlI CCTC 2 cut(s) 103, 197
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 1 cut(s) 420
NlaIII CATG 2 cut(s) 164, 366
NmuCI GTSAC 1 cut(s) 6
PkrI GCNGC 1 cut(s) 225
PsiI TTATAA 1 cut(s) 155
PspPI GGNCC 1 cut(s) 131
PsuI RGATCY 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 420
Sau96I GGNCC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 212
SetI ASST 9 cut(s) 13, 45, 133, 262, 271, 311, 316, 379, 396
SinI GGWCC 1 cut(s) 131
Sse9I AATT 2 cut(s) 14, 354
SspMI CTAG 4 cut(s) 65, 218, 233, 424
TaaI ACNGT 2 cut(s) 214, 292
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 14, 354
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 217, 243
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 3 cut(s) 17, 41, 384
TspRI CASTG 2 cut(s) 217, 243
VneI GTGCAC 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XspI CTAG 4 cut(s) 65, 218, 233, 424
ZraI GACGTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.