Rh5CG251400

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001579
Physical Location & Seq
Reverse (-)
26484195 .. 26485787
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG251400.1

Sequence Viewer

Length: 993 bp
ATGGCTAGCTACAGCTCCTCTTTTGATCCGAAATCAGATTCATTGGAGGTTGGAAATGTCGAGGATTTTAAGGTTCATGTGTTCAAATCATCATCTGAGTTGCTTGAAAAGCTTCATGAGAAATGGAGCAAAGTAGGAAAGAAACCATACCCAGCCATGTATTCCAGCACTTATGGTGGAATCATTCTTGATCCAGCTTTGATGGTGATTCCAATAGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCCATTCTCTTAAATGGATACCTGTATGAGCTGGATGTCCATCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCCCCTCTCCCTTTGATCGGTCAACTCTTCGGAGCATTCTTGTGCAACTGGCGGCAGCATCACAGATCAAGAAAGGAACTCTAAGATATTGGATGAGTGCCGGTCCTGGTGATTTTTTGCTCCAACCTACAGGGTGCCCAACATCTGCGTTCTATGCAGTAGTCATTGATGAGGACTTCAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCCTCTATTCCCATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCCAAATGTGAATGTAGCTTTTATAACACATGACAAGGAGCTTATTGTACCCATCTTTGACAAGATCCTTAGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTTGAGTCGGGGCATCTGAAAGGTGTGACAACTAGAAACATTAGTGTGGAAGAAGCCAAAAGCTCAGTGGAAATGATGTTTGTAGGAAGCACACTGCCACTGTTGCCAATTATCACGTGGGACGAACAGCCCGTTGGCGATGGTAACAACTTTCTCTTGATGATTAAACTCATTTTCCCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

330

Amino Acids

36.5

Weight (kDa)

5.93

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 82 - 306 4e-39 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 471
AciI CCGC 2 cut(s) 307, 389
AclWI GGATC 5 cut(s) 20, 185, 331, 344, 751
AcuI CTGAAG 1 cut(s) 654
AcvI CACGTG 1 cut(s) 924
AfaI GTAC 2 cut(s) 741, 772
AfiI CCNNNNNNNGG 2 cut(s) 354, 780
AgsI TTSAA 5 cut(s) 85, 107, 327, 517, 791
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
AlwI GGATC 5 cut(s) 20, 185, 331, 344, 751
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 392
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 440, 692
AsuHPI GGTGA 3 cut(s) 217, 458, 561
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 2 cut(s) 440, 692
BaeGI GKGCMC 1 cut(s) 476
BamHI GGATCC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 471
BbrPI CACGTG 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 642
BbvI GCAGC 1 cut(s) 404
BccI CCATC 4 cut(s) 196, 306, 752, 941
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 269
BclI TGATCA 1 cut(s) 543
BfaI CTAG 3 cut(s) 6, 794, 840
BfmI CTRYAG 2 cut(s) 10, 465
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 2 cut(s) 390, 393
BlsI GCNGC 2 cut(s) 391, 394
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 2 cut(s) 440, 692
BmgT120I GGNCC 2 cut(s) 440, 692
BmiI GGNNCC 3 cut(s) 338, 473, 646
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 404, 829
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 924
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 780
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 3 cut(s) 298, 435, 673
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 354, 780
BseMII CTCAG 3 cut(s) 87, 328, 885
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 1 cut(s) 404
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 471
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 2 cut(s) 354, 780
BsmFI GGGAC 1 cut(s) 941
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 476
Bsp143I GATC 9 cut(s) 25, 190, 220, 317, 336, 352, 402, 543, 756
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 2 cut(s) 307, 389
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 88, 327, 884
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 338, 473, 646
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 5 cut(s) 20, 185, 331, 344, 751
BspT107I GGYRCC 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 9 cut(s) 25, 190, 220, 317, 336, 352, 402, 543, 756
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 775, 909
Bst6I CTCTTC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 924
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 5 cut(s) 96, 314, 419, 761, 871
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 3 cut(s) 298, 435, 673
BstKTI GATC 9 cut(s) 28, 193, 223, 320, 339, 355, 405, 546, 759
BstMBI GATC 9 cut(s) 25, 190, 220, 317, 336, 352, 402, 543, 756
BstMWI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 2 cut(s) 10, 465
BstSLI GKGCMC 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 404
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 336, 756
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 2 cut(s) 336, 756
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 960
BtsCI GGATG 3 cut(s) 298, 435, 673
BtsI GCAGTG 1 cut(s) 899
BtsIMutI CAGTG 4 cut(s) 527, 879, 899, 905
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 440, 692
Csp6I GTAC 2 cut(s) 740, 771
CviAII CATG 7 cut(s) 77, 116, 157, 226, 242, 562, 722
CviQI GTAC 2 cut(s) 740, 771
DdeI CTNAG 5 cut(s) 96, 314, 419, 761, 871
DpnI GATC 9 cut(s) 27, 192, 222, 319, 338, 354, 404, 545, 758
DpnII GATC 9 cut(s) 25, 190, 220, 317, 336, 352, 402, 543, 756
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 440, 692
Eco57I CTGAAG 1 cut(s) 654
Eco72I CACGTG 1 cut(s) 924
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
FaqI GGGAC 1 cut(s) 941
FatI CATG 7 cut(s) 76, 115, 156, 225, 241, 561, 721
FauNDI CATATG 1 cut(s) 659
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 2 cut(s) 390, 393
FokI GGATG 3 cut(s) 305, 442, 680
Fsp4HI GCNGC 2 cut(s) 390, 393
FspBI CTAG 3 cut(s) 6, 794, 840
GluI GCNGC 2 cut(s) 390, 393
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 438
Hin1II CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 38, 180, 208, 812
HpaII CCGG 1 cut(s) 438
HphI GGTGA 3 cut(s) 217, 458, 561
Hpy166II GTNNAC 2 cut(s) 360, 598
Hpy188I TCNGA 7 cut(s) 30, 37, 97, 317, 369, 609, 825
Hpy188III TCNNGA 5 cut(s) 116, 188, 406, 788, 964
Hpy8I GTNNAC 2 cut(s) 360, 598
HpyAV CCTTC 4 cut(s) 524, 614, 667, 683
HpyCH4III ACNGT 2 cut(s) 775, 909
HpyCH4IV ACGT 1 cut(s) 923
HpyCH4V TGCA 4 cut(s) 382, 494, 525, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
HpyF3I CTNAG 5 cut(s) 96, 314, 419, 761, 871
HpySE526I ACGT 1 cut(s) 923
Hsp92II CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 9 cut(s) 25, 190, 220, 317, 336, 352, 402, 543, 756
LmnI GCTCC 6 cut(s) 20, 126, 369, 462, 644, 730
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 2 cut(s) 404, 829
MaeI CTAG 3 cut(s) 6, 794, 840
MaeII ACGT 1 cut(s) 923
MaeIII GTNAC 4 cut(s) 567, 677, 832, 950
MalI GATC 9 cut(s) 27, 192, 222, 319, 338, 354, 404, 545, 758
MboI GATC 9 cut(s) 25, 190, 220, 317, 336, 352, 402, 543, 756
MboII GAAGA 4 cut(s) 356, 601, 647, 869
MflI RGATCY 2 cut(s) 336, 756
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 1 cut(s) 915
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 2 cut(s) 31, 484
MnlI CCTC 8 cut(s) 28, 40, 55, 230, 323, 352, 502, 562
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 6 cut(s) 69, 269, 537, 779, 972, 991
MslI CAYNNNNRTG 3 cut(s) 377, 662, 851
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 109, 329, 491, 910
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 659
NdeII GATC 9 cut(s) 25, 190, 220, 317, 336, 352, 402, 543, 756
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 7 cut(s) 80, 119, 160, 229, 245, 565, 725
NlaIV GGNNCC 3 cut(s) 338, 473, 646
NmuCI GTSAC 2 cut(s) 567, 832
PagI TCATGA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 936
PctI GAATGC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 38, 180, 208
PkrI GCNGC 2 cut(s) 391, 394
PleI GAGTC 1 cut(s) 820
PmaCI CACGTG 1 cut(s) 924
PmlI CACGTG 1 cut(s) 924
PpsI GAGTC 1 cut(s) 820
Ppu21I YACGTR 1 cut(s) 924
PsiI TTATAA 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 442
PspCI CACGTG 1 cut(s) 924
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 338, 473, 646
PspPI GGNCC 2 cut(s) 440, 692
PsuI RGATCY 2 cut(s) 336, 756
RsaI GTAC 2 cut(s) 741, 772
RsaNI GTAC 2 cut(s) 740, 771
RseI CAYNNNNRTG 3 cut(s) 377, 662, 851
SaqAI TTAA 6 cut(s) 69, 269, 537, 779, 972, 991
SatI GCNGC 2 cut(s) 390, 393
Sau3AI GATC 9 cut(s) 25, 190, 220, 317, 336, 352, 402, 543, 756
Sau96I GGNCC 2 cut(s) 440, 692
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 2 cut(s) 404, 829
SfcI CTRYAG 2 cut(s) 10, 465
SinI GGWCC 2 cut(s) 440, 692
SmiMI CAYNNNNRTG 3 cut(s) 377, 662, 851
Sse9I AATT 1 cut(s) 915
SsiI CCGC 2 cut(s) 307, 389
SspMI CTAG 3 cut(s) 6, 794, 840
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 775, 909
TaiI ACGT 1 cut(s) 926
TaqI TCGA 2 cut(s) 60, 235
TaqII GACCGA 1 cut(s) 345
TasI AATT 1 cut(s) 915
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 3 cut(s) 38, 180, 208
Tru1I TTAA 6 cut(s) 69, 269, 537, 779, 972, 991
Tru9I TTAA 6 cut(s) 69, 269, 537, 779, 972, 991
TscAI CASTG 4 cut(s) 527, 879, 906, 912
TseFI GTSAC 2 cut(s) 567, 832
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 2 cut(s) 567, 832
TspDTI ATGAA 6 cut(s) 30, 65, 104, 221, 578, 602
TspRI CASTG 4 cut(s) 527, 879, 906, 912
VpaK11BI GGWCC 2 cut(s) 440, 692
XcmI CCANNNNNNNNNTGG 2 cut(s) 871, 921
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 3 cut(s) 6, 794, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.