Rorug06G0344800

Branched-chain-amino-acid aminotransferase-like protein 3

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
49586390 .. 49587041
652 bp
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UTR
Exon/CDS
Intron
Rorug06G0344800.1

Sequence Viewer

Length: 528 bp
ATGGATTTTCGGGGCAATTCTATCCAAGAATGTGATACCCAATATTGGGCTTCTCAGAGAATTGGGCGTGCCCCAGTCGTCTATCCTCTGTTGGTAACGTATCATGCTGAGATTGTGATGAGAAAGCCTGAATCGTTCAGTGAACTTGTGGGTGAAGTCGAACAATTGGGATTTGACCCTCAAAAGTCGAGCTTTATGCATGCCATGCACGCATTATATGGGAAGAAGACGACATGGAAGCGAAATGAAGAGGCTTATAGGAGGTGGGGTTGGTCGGATAATGATATTCTTTCTGCCTTCAGCTTGGAGAAGAGAATCATCCCAAGGTGTTCAGTTGTTAGAGTTTTGTTGTTGAAAGGATTGATGAAAGAGGAGGAATTGAGTTTGGCTACTGTGATTTCGAGGTCGGAGCAGTCCTTCTTGGATAGGTTTGTGAACAGATATCTCAGCCAAGTACCTCGATCAATTGTTGGATGTGTACCGTGGAAAAGTGGATATCCAGGATGTGTTGTAATTTCTCATGGGTGA

Protein Analysis

175

Amino Acids

20.15

Weight (kDa)

8.91

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 283
AfaI GTAC 2 cut(s) 456, 480
AfiI CCNNNNNNNGG 2 cut(s) 45, 46
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 2 cut(s) 192, 303
AluI AGCT 2 cut(s) 192, 303
AsuHPI GGTGA 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 1 cut(s) 501
Bme1390I CCNGG 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 501
BmrI ACTGGG 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 323, 482
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 46
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 323, 482
BseGI GGATG 3 cut(s) 318, 479, 509
BseLI CCNNNNNNNGG 2 cut(s) 45, 46
BseMII CTCAG 3 cut(s) 68, 99, 460
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 45, 46
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 461
BspCNI CTCAG 3 cut(s) 67, 100, 459
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 323, 482
BssMI GATC 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 394, 483
Bst6I CTCTTC 2 cut(s) 243, 305
BstAPI GCANNNNNTGC 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 69, 201, 210
BstDEI CTNAG 3 cut(s) 54, 108, 446
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 3 cut(s) 318, 479, 509
BstKTI GATC 1 cut(s) 464
BstMBI GATC 1 cut(s) 461
BstMWI GCNNNNNNNGC 2 cut(s) 205, 209
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 499
BstSLI GKGCMC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 3 cut(s) 318, 479, 509
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 3 cut(s) 69, 201, 210
Csp6I GTAC 2 cut(s) 455, 479
CviAII CATG 5 cut(s) 104, 200, 205, 234, 521
CviJI RGCY 7 cut(s) 50, 127, 192, 254, 303, 389, 450
CviKI_1 RGCY 7 cut(s) 50, 127, 192, 254, 303, 389, 450
CviQI GTAC 2 cut(s) 455, 479
DdeI CTNAG 3 cut(s) 54, 108, 446
DpnI GATC 1 cut(s) 463
DpnII GATC 1 cut(s) 461
Eam1104I CTCTTC 2 cut(s) 243, 305
EarI CTCTTC 2 cut(s) 243, 305
Eco130I CCWWGG 1 cut(s) 323
Eco32I GATATC 2 cut(s) 443, 497
Eco57I CTGAAG 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 499
EcoRV GATATC 2 cut(s) 443, 497
EcoT14I CCWWGG 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 5 cut(s) 107, 203, 208, 237, 524
FaiI YATR 9 cut(s) 105, 197, 201, 206, 217, 219, 235, 258, 522
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 5 cut(s) 103, 199, 204, 233, 520
FokI GGATG 3 cut(s) 305, 486, 516
Hin1II CATG 5 cut(s) 107, 203, 208, 237, 524
HinfI GANTC 2 cut(s) 131, 315
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 3 cut(s) 143, 436, 479
Hpy188I TCNGA 3 cut(s) 57, 277, 409
Hpy8I GTNNAC 3 cut(s) 143, 436, 479
HpyAV CCTTC 2 cut(s) 307, 427
HpyCH4III ACNGT 2 cut(s) 394, 483
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 199, 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 209
HpyF3I CTNAG 3 cut(s) 54, 108, 446
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 5 cut(s) 107, 203, 208, 237, 524
Kzo9I GATC 1 cut(s) 461
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 4 cut(s) 87, 141, 486, 513
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 463
MboI GATC 1 cut(s) 461
MboII GAAGA 4 cut(s) 235, 238, 260, 322
MfeI CAATTG 2 cut(s) 164, 465
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 6 cut(s) 16, 60, 164, 377, 465, 513
MmeI TCCRAC 3 cut(s) 255, 387, 451
MnlI CCTC 8 cut(s) 96, 189, 244, 255, 364, 367, 396, 468
Mph1103I ATGCAT 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 501
MunI CAATTG 2 cut(s) 164, 465
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 205, 209
NdeII GATC 1 cut(s) 461
NlaIII CATG 5 cut(s) 107, 203, 208, 237, 524
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 131, 315
PfoI TCCNGGA 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
RsaI GTAC 2 cut(s) 456, 480
RsaNI GTAC 2 cut(s) 455, 479
Sau3AI GATC 1 cut(s) 461
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 1 cut(s) 73
SetI ASST 8 cut(s) 101, 194, 266, 305, 329, 407, 431, 460
SphI GCATGC 1 cut(s) 203
Sse9I AATT 6 cut(s) 16, 60, 164, 377, 465, 513
SspI AATATT 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 394, 483
TaiI ACGT 1 cut(s) 101
TaqI TCGA 4 cut(s) 159, 188, 401, 460
TasI AATT 6 cut(s) 16, 60, 164, 377, 465, 513
TfiI GAWTC 2 cut(s) 131, 315
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 261, 380
TspRI CASTG 1 cut(s) 145
XceI RCATGY 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.