Rmu_sc0006926.1_g000027

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006926.1
OG0001579
Physical Location & Seq
Forward (+)
95681 .. 100819
5139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006926.1_g000027.1.cds

Sequence Viewer

Length: 1407 bp
atgatactaaccaaaccatgtgagaaatgtgatggcttgagagcgaagggtggctctgacttcgttgggttcgatccccaaaacctccggagggttagttacgccggtcgtccgggtattccgatcgtaaggacgggcctggtactgtgcactggtgacggcatagaagaggatggagctgggtgtgcggaacaagttcgttacattcatagctgcaataagctcatgaaaccttgtgatcagtcctacagtaacatcgattcgatcgttcttagcacccatcaatgcagagacggggaagattcattggaggttggaaatgtcgaggattttaaggttcatgtgttcagatcatcatctgagttgcttgaaaagcttcatgagaagtggagcaaagtaggaaagaaaccatacccagccatgtattccagcatttatggtggaatcattcttgatccagctttgatggtgattccaatagacgatcacatggttcatcgaggccatggtgtgtttgacacagccattctcttaaatggatacctgtatgagctggatgtccatctaaaccgcttcctcagatcagcttcaaaagcaaggatcccctctccctttgatcggtcaactcttcggagcattcttgtgcaactggcggcagcatcacagatcaagaaaggaactctaagatattggatgagtgccggtcctggtgattttttgttccaacctacagggtgcccaacatctgcattctatgcagtagtcattgatgaggacttcaatcagtgcaaagaaggggataaagtgatcacttcctctattcccatgaagtcaccagaaatggcgacaatgaagaatgtgaactaccttccgaatatccttgcaaaaatggaagctgaagacaaaggagcctttgcttccatatgggtggatgagaagggttacatagcaaaaggtccaaatgtgaatgtagcttttataacacatgacaaggagcttattgtacccttctttgacaagatccttggtggttgtaccgtgttaaggcttcttgaactagcacccaagttggttgagtcggggcgtctgaaaggtgtgacaactagaaacattagtgtggaagaagccaaaagctcagcggaaatgatgtttgtaggaagcacactgccactgttgccaattatcgcgtgggatgaacagcccgttggcgatgggaaggtgggagaattgacaatggcactctccgatctggtgtgggatgatatgttagttgatgtgaaacgcaaccattacatatgtaattctgctacagggtttaaagatgagctgcctgtgcctaatgcagacattgtcaaattttttcaaatcactaaacaagtttgcatcttgcaggccaattgtgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

468

Amino Acids

51.69

Weight (kDa)

5.77

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 980
AccB1I GGYRCC 1 cut(s) 735
AccII CGCG 1 cut(s) 1187
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 4 cut(s) 188, 571, 653, 1139
AclWI GGATC 5 cut(s) 68, 449, 595, 608, 1015
AcsI RAATTY 1 cut(s) 1355
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 1084
AfaI GTAC 3 cut(s) 144, 1005, 1036
AfiI CCNNNNNNNGG 3 cut(s) 91, 618, 1044
AgsI TTSAA 5 cut(s) 371, 591, 781, 1055, 1364
AjnI CCWGG 2 cut(s) 138, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 1188, 1220
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 285
Alw44I GTGCAC 1 cut(s) 148
AlwI GGATC 5 cut(s) 68, 449, 595, 608, 1015
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 3 cut(s) 136, 502, 1392
ApaLI GTGCAC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 213, 656, 1327
ApoI RAATTY 1 cut(s) 1355
Asp700I GAANNNNTTC 2 cut(s) 195, 375
AspS9I GGNCC 3 cut(s) 136, 704, 956
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 167, 481, 722, 825
AvaII GGWCC 2 cut(s) 704, 956
BaeGI GKGCMC 2 cut(s) 152, 740
BamHI GGATCC 1 cut(s) 600
BanI GGYRCC 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 200, 668, 1314
BccI CCATC 6 cut(s) 26, 167, 288, 460, 570, 1205
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 2 cut(s) 140, 708
BciVI GTATCC 1 cut(s) 533
BclI TGATCA 2 cut(s) 238, 807
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 2 cut(s) 1058, 1104
BfmI CTRYAG 3 cut(s) 247, 729, 1308
BfuI GTATCC 1 cut(s) 533
BisI GCNGC 4 cut(s) 214, 654, 657, 1328
BlpI GCTNAGC 1 cut(s) 1135
BlsI GCNGC 4 cut(s) 215, 655, 658, 1329
Bme1390I CCNGG 3 cut(s) 114, 140, 708
Bme18I GGWCC 2 cut(s) 704, 956
BmgT120I GGNCC 3 cut(s) 136, 704, 956
BmiI GGNNCC 3 cut(s) 602, 737, 910
BmrFI CCNGG 3 cut(s) 114, 140, 708
BmsI GCATC 2 cut(s) 668, 1392
BpiI GAAGAC 1 cut(s) 906
Bpu1102I GCTNAGC 1 cut(s) 1135
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 258
BsaBI GATNNNNATC 2 cut(s) 355, 561
BsaHI GRCGYC 1 cut(s) 1084
BsaJI CCNNGG 2 cut(s) 505, 1024
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 618, 1044
Bse118I RCCGGY 2 cut(s) 104, 701
Bse1I ACTGG 2 cut(s) 157, 654
Bse8I GATNNNNATC 2 cut(s) 355, 561
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 2 cut(s) 140, 708
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 505, 1024
BseGI GGATG 6 cut(s) 178, 562, 699, 937, 1198, 1264
BseJI GATNNNNATC 2 cut(s) 355, 561
BseLI CCNNNNNNNGG 3 cut(s) 91, 618, 1044
BseMII CTCAG 3 cut(s) 351, 592, 1149
BseNI ACTGG 2 cut(s) 157, 654
BseSI GKGCMC 2 cut(s) 152, 740
BseXI GCAGC 3 cut(s) 200, 668, 1314
BseYI CCCAGC 2 cut(s) 179, 415
Bsh1236I CGCG 1 cut(s) 1187
Bsh1285I CGRYCG 3 cut(s) 109, 126, 267
BshFI GGCC 3 cut(s) 138, 504, 1394
BshNI GGYRCC 1 cut(s) 735
BshVI ATCGAT 1 cut(s) 258
BsiEI CGRYCG 3 cut(s) 109, 126, 267
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 4 cut(s) 88, 105, 113, 702
BslI CCNNNNNNNGG 3 cut(s) 91, 618, 1044
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
BsmI GAATGC 2 cut(s) 636, 749
BsnI GGCC 3 cut(s) 138, 504, 1394
Bsp1286I GDGCHC 2 cut(s) 152, 740
Bsp13I TCCGGA 1 cut(s) 87
Bsp1720I GCTNAGC 1 cut(s) 1135
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 4 cut(s) 188, 571, 653, 1139
BspANI GGCC 3 cut(s) 138, 504, 1394
BspCNI CTCAG 3 cut(s) 352, 591, 1148
BspDI ATCGAT 1 cut(s) 258
BspEI TCCGGA 1 cut(s) 87
BspFNI CGCG 1 cut(s) 1187
BspHI TCATGA 2 cut(s) 225, 379
BspLI GGNNCC 3 cut(s) 602, 737, 910
BspPI GGATC 5 cut(s) 68, 449, 595, 608, 1015
BspT107I GGYRCC 1 cut(s) 735
BsrFI RCCGGY 2 cut(s) 104, 701
BsrI ACTGG 2 cut(s) 157, 654
BssAI RCCGGY 2 cut(s) 104, 701
BssECI CCNNGG 2 cut(s) 505, 1024
BssNI GRCGYC 1 cut(s) 1084
BssT1I CCWWGG 2 cut(s) 505, 1024
Bst2UI CCWGG 2 cut(s) 140, 708
Bst4CI ACNGT 4 cut(s) 147, 251, 1039, 1173
Bst6I CTCTTC 2 cut(s) 162, 633
BstACI GRCGYC 1 cut(s) 1084
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 1 cut(s) 1392
BstDEI CTNAG 5 cut(s) 272, 360, 578, 683, 1135
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 6 cut(s) 178, 562, 699, 937, 1198, 1264
BstFNI CGCG 1 cut(s) 1187
BstMAI GTCTC 1 cut(s) 285
BstMCI CGRYCG 3 cut(s) 109, 126, 267
BstMWI GCNNNNNNNGC 6 cut(s) 185, 373, 593, 755, 1174, 1333
BstNI CCWGG 2 cut(s) 140, 708
BstSCI CCNGG 3 cut(s) 112, 138, 706
BstSFI CTRYAG 3 cut(s) 247, 729, 1308
BstSLI GKGCMC 2 cut(s) 152, 740
BstUI CGCG 1 cut(s) 1187
BstV1I GCAGC 3 cut(s) 200, 668, 1314
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 2 cut(s) 600, 1020
BstXI CCANNNNNNTGG 1 cut(s) 928
BstYI RGATCY 2 cut(s) 600, 1020
Bsu15I ATCGAT 1 cut(s) 258
BsuI GTATCC 1 cut(s) 533
BsuRI GGCC 3 cut(s) 138, 504, 1394
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 505
BtgZI GCGATG 1 cut(s) 1224
BtsCI GGATG 6 cut(s) 178, 562, 699, 937, 1198, 1264
BtsI GCAGTG 1 cut(s) 1163
BtsIMutI CAGTG 4 cut(s) 150, 791, 1163, 1169
Cac8I GCNNGC 1 cut(s) 1392
CciI TCATGA 2 cut(s) 225, 379
Cfr10I RCCGGY 2 cut(s) 104, 701
Cfr13I GGNCC 3 cut(s) 136, 704, 956
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 1 cut(s) 1073
Csp6I GTAC 3 cut(s) 143, 1004, 1035
CviAII CATG 9 cut(s) 18, 226, 341, 380, 421, 490, 506, 826, 986
CviQI GTAC 3 cut(s) 143, 1004, 1035
DdeI CTNAG 5 cut(s) 272, 360, 578, 683, 1135
DraI TTTAAA 1 cut(s) 1318
Eam1104I CTCTTC 2 cut(s) 162, 633
EarI CTCTTC 2 cut(s) 162, 633
Eco130I CCWWGG 2 cut(s) 505, 1024
Eco47I GGWCC 2 cut(s) 704, 956
Eco57I CTGAAG 1 cut(s) 918
EcoRII CCWGG 2 cut(s) 138, 706
EcoT14I CCWWGG 2 cut(s) 505, 1024
ErhI CCWWGG 2 cut(s) 505, 1024
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 9 cut(s) 21, 229, 344, 383, 424, 493, 509, 829, 989
FatI CATG 9 cut(s) 17, 225, 340, 379, 420, 489, 505, 825, 985
FauNDI CATATG 2 cut(s) 923, 1295
FbaI TGATCA 2 cut(s) 238, 807
Fnu4HI GCNGC 4 cut(s) 214, 654, 657, 1328
FokI GGATG 6 cut(s) 185, 569, 706, 944, 1205, 1271
Fsp4HI GCNGC 4 cut(s) 214, 654, 657, 1328
FspBI CTAG 2 cut(s) 1058, 1104
GluI GCNGC 4 cut(s) 214, 654, 657, 1328
GsaI CCCAGC 2 cut(s) 183, 419
HaeIII GGCC 3 cut(s) 138, 504, 1394
HapII CCGG 4 cut(s) 88, 105, 113, 702
HgaI GACGC 1 cut(s) 1073
Hin1I GRCGYC 1 cut(s) 1084
Hin1II CATG 9 cut(s) 21, 229, 344, 383, 424, 493, 509, 829, 989
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 5 cut(s) 260, 302, 444, 472, 1076
HpaII CCGG 4 cut(s) 88, 105, 113, 702
HphI GGTGA 4 cut(s) 167, 481, 722, 825
Hpy166II GTNNAC 3 cut(s) 150, 624, 862
Hpy188I TCNGA 9 cut(s) 58, 123, 350, 361, 581, 633, 873, 1089, 1246
Hpy188III TCNNGA 6 cut(s) 88, 226, 380, 452, 670, 1052
Hpy8I GTNNAC 3 cut(s) 150, 624, 862
HpyAV CCTTC 6 cut(s) 40, 788, 878, 931, 1018, 1210
HpyCH4III ACNGT 4 cut(s) 147, 251, 1039, 1173
HpyF10VI GCNNNNNNNGC 6 cut(s) 185, 373, 593, 755, 1174, 1333
HpyF3I CTNAG 5 cut(s) 272, 360, 578, 683, 1135
Hsp92I GRCGYC 1 cut(s) 1084
Hsp92II CATG 9 cut(s) 21, 229, 344, 383, 424, 493, 509, 829, 989
Kpn2I TCCGGA 1 cut(s) 87
Ksp22I TGATCA 2 cut(s) 238, 807
LmnI GCTCC 5 cut(s) 176, 390, 633, 908, 994
Lsp1109I GCAGC 3 cut(s) 200, 668, 1314
LweI GCATC 2 cut(s) 668, 1392
MaeI CTAG 2 cut(s) 1058, 1104
MaeIII GTNAC 7 cut(s) 98, 155, 200, 251, 831, 941, 1096
MboII GAAGA 6 cut(s) 179, 311, 620, 865, 911, 1133
MfeI CAATTG 1 cut(s) 1396
MflI RGATCY 2 cut(s) 600, 1020
MhlI GDGCHC 2 cut(s) 152, 740
MluCI AATT 5 cut(s) 1179, 1226, 1300, 1355, 1396
MlyI GAGTC 1 cut(s) 1085
MmeI TCCRAC 2 cut(s) 295, 748
MroI TCCGGA 1 cut(s) 87
MroXI GAANNNNTTC 2 cut(s) 195, 375
MseI TTAA 4 cut(s) 333, 533, 1043, 1317
MslI CAYNNNNRTG 3 cut(s) 641, 926, 1115
MspA1I CMGCKG 1 cut(s) 1139
MspI CCGG 4 cut(s) 88, 105, 113, 702
MspR9I CCNGG 3 cut(s) 114, 140, 708
MunI CAATTG 1 cut(s) 1396
Mva1269I GAATGC 2 cut(s) 636, 749
MvaI CCWGG 2 cut(s) 140, 708
MvnI CGCG 1 cut(s) 1187
MwoI GCNNNNNNNGC 6 cut(s) 185, 373, 593, 755, 1174, 1333
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 505
NdeI CATATG 2 cut(s) 923, 1295
NlaIII CATG 9 cut(s) 21, 229, 344, 383, 424, 493, 509, 829, 989
NlaIV GGNNCC 3 cut(s) 602, 737, 910
NmuCI GTSAC 3 cut(s) 155, 831, 1096
PagI TCATGA 2 cut(s) 225, 379
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 264
PctI GAATGC 2 cut(s) 636, 749
PdmI GAANNNNTTC 2 cut(s) 195, 375
PfeI GAWTC 4 cut(s) 260, 302, 444, 472
PflFI GACNNNGTC 1 cut(s) 1349
PkrI GCNGC 4 cut(s) 215, 655, 658, 1329
Ple19I CGATCG 2 cut(s) 126, 267
PleI GAGTC 1 cut(s) 1084
PpsI GAGTC 1 cut(s) 1084
PsiI TTATAA 1 cut(s) 980
Psp6I CCWGG 2 cut(s) 138, 706
PspFI CCCAGC 2 cut(s) 179, 415
PspGI CCWGG 2 cut(s) 138, 706
PspN4I GGNNCC 3 cut(s) 602, 737, 910
PspPI GGNCC 3 cut(s) 136, 704, 956
PsuI RGATCY 2 cut(s) 600, 1020
PsyI GACNNNGTC 1 cut(s) 1349
PvuI CGATCG 2 cut(s) 126, 267
RsaI GTAC 3 cut(s) 144, 1005, 1036
RsaNI GTAC 3 cut(s) 143, 1004, 1035
RseI CAYNNNNRTG 3 cut(s) 641, 926, 1115
SaqAI TTAA 4 cut(s) 333, 533, 1043, 1317
SatI GCNGC 4 cut(s) 214, 654, 657, 1328
Sau96I GGNCC 3 cut(s) 136, 704, 956
SchI GAGTC 1 cut(s) 1085
ScrFI CCNGG 3 cut(s) 114, 140, 708
SduI GDGCHC 2 cut(s) 152, 740
SfaNI GCATC 2 cut(s) 668, 1392
SfcI CTRYAG 3 cut(s) 247, 729, 1308
SinI GGWCC 2 cut(s) 704, 956
SmiMI CAYNNNNRTG 3 cut(s) 641, 926, 1115
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 5 cut(s) 1179, 1226, 1300, 1355, 1396
SsiI CCGC 4 cut(s) 188, 571, 653, 1139
SspMI CTAG 2 cut(s) 1058, 1104
StyD4I CCNGG 3 cut(s) 112, 138, 706
StyI CCWWGG 2 cut(s) 505, 1024
TaaI ACNGT 4 cut(s) 147, 251, 1039, 1173
TaqI TCGA 5 cut(s) 72, 258, 263, 324, 499
TaqII GACCGA 1 cut(s) 609
TasI AATT 5 cut(s) 1179, 1226, 1300, 1355, 1396
TauI GCSGC 1 cut(s) 656
TfiI GAWTC 4 cut(s) 260, 302, 444, 472
Tru1I TTAA 4 cut(s) 333, 533, 1043, 1317
Tru9I TTAA 4 cut(s) 333, 533, 1043, 1317
TscAI CASTG 4 cut(s) 157, 791, 1170, 1176
TseFI GTSAC 3 cut(s) 155, 831, 1096
TseI GCWGC 3 cut(s) 213, 656, 1327
Tsp45I GTSAC 3 cut(s) 155, 831, 1096
TspDTI ATGAA 9 cut(s) 197, 242, 294, 329, 368, 485, 842, 866, 1209
TspRI CASTG 4 cut(s) 157, 791, 1170, 1176
Tth111I GACNNNGTC 1 cut(s) 1349
VneI GTGCAC 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 704, 956
XapI RAATTY 1 cut(s) 1355
XcmI CCANNNNNNNNNTGG 1 cut(s) 1185
XmnI GAANNNNTTC 2 cut(s) 195, 375
XspI CTAG 2 cut(s) 1058, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.