Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Reverse (-)

6742191 .. 6744988

Gene Structure 2798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1096500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCTTCCATGGCTTCCCTCCCGTCTCTCCCAAAACCCATCTCGCAAACCCAGCATTTTCCTATAAACCCAGCTCGCCATTCAAGGGGTTTGACCGTAGTTTCACGAAATCATCTATTTTCCGGACATGGGTTGCTTAATTTTCAACATGGGTCGTTCGGAGCCGGAGAGATGAGGCCCATCAGAAGTTCGAACCGAACCAAAGCTGTGTCCGATTCTGGGATCCAAGTCCCTGAGGTTCCACAGCTGACTTCCACAGAGGCAATTGAAAGGCTAAAAGCACACCGTGAAAATCAGAATGGTAAGCAACAATTTCTCGCCATGTACTCTAGCGTTTTCGGAGGAATTACGACGGATCCAGCTGCTATGGTGATTCCCATTGATGACCACATGGTCCACAGAGGGCATGGTGTTTTCGACACTGCTGCTATAAAGGATGGATATCTCTATGAGTTGGACCAGCACCTTGACCGTATTTTAAGGTCAGCATCCATGGCGAAAATTGACCTGCCATTTGATCGGGAAACCATAAGAAGGATACTTTTACAAACTGTGAGTGTTTCCAAGTGCAAAACAGGATCGCTGAGATACTGGCTCTCAGCAGGACCGGGTGATTTTCAGTTGTCCCCATCTGGCTGCCATCAGCCATCGCTTTATGCTATTGTGATCCAAGATCAATCACCCTTTAGTTCGAAGGGAATTAAAGTAGTAACTTCTTCGATCCCAATAAAACCCCCCCAATTTGCAACCATGAAGAGTGTAAATTATCTTCCAAATGTGCTTTCGAAGATGGAGGCTGAAGAAAAGGGTGCATTCGCAGCCATTTGGCTGGACGGAGATGGTTTCATCGCTGAAGGGCCTAACATGAATGTCGCTTTTGTTACAAAAGAGAAGGAACTTGTGATGCCTCAGTTTGACAAAATCCTAAGTGGGTGCACAGCAAGGAGAGTTTTGGCTCTTGCAGAAGGGCTGGTGGGGGATGGCAAGCTTCGGGGAGTAAGAGTAGACAATGTGACTGTTGAGGAAGGGAAGAAGGCAGATGAGATGATGCTTATTGGCAGTGGAATTCTCGTCCGCCCTGTGGTGCAGTGGGACGAGCAAATCATTGGGGATGGTAAAGAAGGCTCGTTGACTCAGATTCTCCTGAATCTTATTATCGAGGACATGAAATCCGGCCCGCCCTCTGTCCGAGCACCTATTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

403

Amino Acids

43.91

Weight (kDa)

8.31

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	137 - 364	5.3e-47	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	1005
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	2 cut(s)	1075, 1178
AclWI	GGATC	7 cut(s)	217, 230, 350, 363, 586, 661, 715
AcsI	RAATTY	1 cut(s)	1065
AcuI	CTGAAG	2 cut(s)	819, 873
AdeI	CACNNNGTG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	5 cut(s)	85, 129, 219, 534, 1081
AgsI	TTSAA	3 cut(s)	84, 146, 269
AjuI	GAANNNNNNNTTGG	2 cut(s)	766, 798
AluBI	AGCT	5 cut(s)	74, 206, 247, 362, 988
AluI	AGCT	5 cut(s)	74, 206, 247, 362, 988
Alw21I	GWGCWC	2 cut(s)	938, 1195
Alw26I	GTCTC	1 cut(s)	30
Alw44I	GTGCAC	1 cut(s)	934
AlwI	GGATC	7 cut(s)	217, 230, 350, 363, 586, 661, 715
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	3 cut(s)	176, 857, 1174
ApaLI	GTGCAC	1 cut(s)	934
ApeKI	GCWGC	4 cut(s)	362, 425, 636, 818
ApoI	RAATTY	1 cut(s)	1065
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AspS9I	GGNCC	6 cut(s)	177, 394, 457, 605, 857, 1175
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	3 cut(s)	382, 623, 672
AsuII	TTCGAA	3 cut(s)	191, 692, 785
AvaII	GGWCC	3 cut(s)	394, 457, 605
AxyI	CCTNAGG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	938
BamHI	GGATCC	2 cut(s)	222, 355
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
Bbv12I	GWGCWC	2 cut(s)	938, 1195
BbvI	GCAGC	4 cut(s)	349, 412, 623, 830
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciVI	GTATCC	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	531
BisI	GCNGC	4 cut(s)	363, 426, 637, 819
BlsI	GCNGC	4 cut(s)	364, 427, 638, 820
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	3 cut(s)	394, 457, 605
BmgT120I	GGNCC	6 cut(s)	177, 394, 457, 605, 857, 1175
BmiI	GGNNCC	4 cut(s)	163, 224, 240, 357
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	3 cut(s)	497, 894, 1038
Bpu14I	TTCGAA	3 cut(s)	191, 692, 785
BpuMI	CCSGG	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	9, 492
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	987, 1017
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 129, 219, 534, 1081
Bse1I	ACTGG	1 cut(s)	596
Bse21I	CCTNAGG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	9, 492
BseGI	GGATG	4 cut(s)	442, 488, 985, 1117
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	5 cut(s)	85, 129, 219, 534, 1081
BseMII	CTCAG	5 cut(s)	225, 575, 612, 923, 1148
BseNI	ACTGG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	938
BseXI	GCAGC	4 cut(s)	349, 412, 623, 830
BseYI	CCCAGC	2 cut(s)	51, 70
BsgI	GTGCAG	1 cut(s)	1106
BshFI	GGCC	3 cut(s)	178, 859, 1176
BsiHKAI	GWGCWC	2 cut(s)	938, 1195
BsiSI	CCGG	4 cut(s)	123, 165, 608, 1173
BslFI	GGGAC	3 cut(s)	215, 610, 1106
BslI	CCNNNNNNNGG	5 cut(s)	85, 129, 219, 534, 1081
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	3 cut(s)	215, 610, 1106
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	3 cut(s)	178, 859, 1176
Bsp119I	TTCGAA	3 cut(s)	191, 692, 785
Bsp1286I	GDGCHC	2 cut(s)	938, 1195
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	7 cut(s)	222, 355, 517, 578, 666, 673, 720
Bsp19I	CCATGG	2 cut(s)	9, 492
BspACI	CCGC	2 cut(s)	1075, 1178
BspANI	GGCC	3 cut(s)	178, 859, 1176
BspCNI	CTCAG	5 cut(s)	226, 576, 611, 922, 1147
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	4 cut(s)	163, 224, 240, 357
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	7 cut(s)	217, 230, 350, 363, 586, 661, 715
BspT104I	TTCGAA	3 cut(s)	191, 692, 785
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	9, 492
BssMI	GATC	7 cut(s)	222, 355, 517, 578, 666, 673, 720
BssT1I	CCWWGG	2 cut(s)	9, 492
Bst4CI	ACNGT	5 cut(s)	97, 287, 473, 553, 1018
Bst6I	CTCTTC	1 cut(s)	749
BstBI	TTCGAA	3 cut(s)	191, 692, 785
BstC8I	GCNNGC	3 cut(s)	76, 986, 1178
BstDEI	CTNAG	6 cut(s)	234, 584, 598, 909, 926, 1134
BstDSI	CCRYGG	2 cut(s)	9, 492
BstF5I	GGATG	4 cut(s)	442, 488, 985, 1117
BstKTI	GATC	7 cut(s)	225, 358, 520, 581, 669, 676, 723
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	7 cut(s)	222, 355, 517, 578, 666, 673, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 52, 494, 818
BstSCI	CCNGG	1 cut(s)	607
BstSLI	GKGCMC	1 cut(s)	938
BstV1I	GCAGC	4 cut(s)	349, 412, 623, 830
BstX2I	RGATCY	2 cut(s)	222, 355
BstXI	CCANNNNNNTGG	1 cut(s)	829
BstYI	RGATCY	2 cut(s)	222, 355
Bsu36I	CCTNAGG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	178, 859, 1176
BtgI	CCRYGG	2 cut(s)	9, 492
BtgZI	GCGATG	2 cut(s)	633, 832
BtsCI	GGATG	4 cut(s)	442, 488, 985, 1117
BtsI	GCAGTG	3 cut(s)	420, 1066, 1094
BtsIMutI	CAGTG	3 cut(s)	420, 1066, 1094
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	3 cut(s)	76, 986, 1178
Cfr13I	GGNCC	6 cut(s)	177, 394, 457, 605, 857, 1175
Csp6I	GTAC	1 cut(s)	325
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	6 cut(s)	234, 584, 598, 909, 926, 1134
DpnI	GATC	7 cut(s)	224, 357, 519, 580, 668, 675, 722
DpnII	GATC	7 cut(s)	222, 355, 517, 578, 666, 673, 720
DraIII	CACNNNGTG	1 cut(s)	287
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
EciI	GGCGGA	1 cut(s)	1064
Eco130I	CCWWGG	2 cut(s)	9, 492
Eco32I	GATATC	1 cut(s)	443
Eco47I	GGWCC	3 cut(s)	394, 457, 605
Eco57I	CTGAAG	2 cut(s)	819, 873
Eco81I	CCTNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	857
EcoRI	GAATTC	1 cut(s)	1065
EcoRV	GATATC	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	9, 492
ErhI	CCWWGG	2 cut(s)	9, 492
Esp3I	CGTCTC	1 cut(s)	30
FaqI	GGGAC	3 cut(s)	215, 610, 1106
FauI	CCCGC	1 cut(s)	1185
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	4 cut(s)	363, 426, 637, 819
FokI	GGATG	4 cut(s)	449, 475, 992, 1124
Fsp4HI	GCNGC	4 cut(s)	363, 426, 637, 819
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	4 cut(s)	363, 426, 637, 819
GsaI	CCCAGC	2 cut(s)	55, 74
HaeIII	GGCC	3 cut(s)	178, 859, 1176
HapII	CCGG	4 cut(s)	123, 165, 608, 1173
HincII	GTYRAC	1 cut(s)	1131
HindII	GTYRAC	1 cut(s)	1131
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	5 cut(s)	215, 373, 1132, 1138, 1147
HpaII	CCGG	4 cut(s)	123, 165, 608, 1173
HphI	GGTGA	3 cut(s)	382, 623, 672
Hpy166II	GTNNAC	4 cut(s)	397, 936, 1006, 1131
Hpy188I	TCNGA	7 cut(s)	161, 185, 214, 297, 341, 1137, 1190
Hpy188III	TCNNGA	4 cut(s)	105, 123, 521, 1144
Hpy8I	GTNNAC	4 cut(s)	397, 936, 1006, 1131
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	8 cut(s)	528, 688, 848, 886, 959, 1019, 1027, 1115
HpyCH4III	ACNGT	5 cut(s)	97, 287, 473, 553, 1018
HpyCH4V	TGCA	6 cut(s)	570, 746, 812, 936, 962, 1087
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 52, 494, 818
HpyF3I	CTNAG	6 cut(s)	234, 584, 598, 909, 926, 1134
Kpn2I	TCCGGA	1 cut(s)	122
Kzo9I	GATC	7 cut(s)	222, 355, 517, 578, 666, 673, 720
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	4 cut(s)	349, 412, 623, 830
LweI	GCATC	3 cut(s)	497, 894, 1038
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	3 cut(s)	709, 880, 1012
MalI	GATC	7 cut(s)	224, 357, 519, 580, 668, 675, 722
MboI	GATC	7 cut(s)	222, 355, 517, 578, 666, 673, 720
MboII	GAAGA	6 cut(s)	708, 761, 766, 799, 812, 1042
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	2 cut(s)	222, 355
MhlI	GDGCHC	2 cut(s)	938, 1195
MluCI	AATT	9 cut(s)	139, 264, 311, 345, 501, 699, 740, 763, 1065
MlyI	GAGTC	1 cut(s)	1126
MmeI	TCCRAC	1 cut(s)	435
MroI	TCCGGA	1 cut(s)	122
MseI	TTAA	3 cut(s)	138, 479, 702
MspA1I	CMGCKG	2 cut(s)	247, 362
MspI	CCGG	4 cut(s)	123, 165, 608, 1173
MspR9I	CCNGG	1 cut(s)	609
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	812
MwoI	GCNNNNNNNGC	4 cut(s)	11, 52, 494, 818
NciI	CCSGG	1 cut(s)	609
NcoI	CCATGG	2 cut(s)	9, 492
NdeII	GATC	7 cut(s)	222, 355, 517, 578, 666, 673, 720
NlaIV	GGNNCC	4 cut(s)	163, 224, 240, 357
NmuCI	GTSAC	1 cut(s)	1012
NspV	TTCGAA	3 cut(s)	191, 692, 785
PctI	GAATGC	1 cut(s)	812
PfeI	GAWTC	4 cut(s)	215, 373, 1138, 1147
PkrI	GCNGC	4 cut(s)	364, 427, 638, 820
PleI	GAGTC	1 cut(s)	1126
PpsI	GAGTC	1 cut(s)	1126
PspFI	CCCAGC	2 cut(s)	51, 70
PspN4I	GGNNCC	4 cut(s)	163, 224, 240, 357
PspPI	GGNCC	6 cut(s)	177, 394, 457, 605, 857, 1175
PsuI	RGATCY	2 cut(s)	222, 355
PvuII	CAGCTG	2 cut(s)	247, 362
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	138, 479, 702
SatI	GCNGC	4 cut(s)	363, 426, 637, 819
Sau3AI	GATC	7 cut(s)	222, 355, 517, 578, 666, 673, 720
Sau96I	GGNCC	6 cut(s)	177, 394, 457, 605, 857, 1175
SchI	GAGTC	1 cut(s)	1126
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	2 cut(s)	938, 1195
SfaNI	GCATC	3 cut(s)	497, 894, 1038
SfuI	TTCGAA	3 cut(s)	191, 692, 785
SinI	GGWCC	3 cut(s)	394, 457, 605
Sse9I	AATT	9 cut(s)	139, 264, 311, 345, 501, 699, 740, 763, 1065
SsiI	CCGC	2 cut(s)	1075, 1178
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	2 cut(s)	9, 492
TaaI	ACNGT	5 cut(s)	97, 287, 473, 553, 1018
TaqI	TCGA	6 cut(s)	191, 417, 692, 719, 785, 1158
TasI	AATT	9 cut(s)	139, 264, 311, 345, 501, 699, 740, 763, 1065
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	4 cut(s)	215, 373, 1138, 1147
Tru1I	TTAA	3 cut(s)	138, 479, 702
Tru9I	TTAA	3 cut(s)	138, 479, 702
TscAI	CASTG	3 cut(s)	427, 1066, 1094
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	4 cut(s)	362, 425, 636, 818
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	4 cut(s)	767, 835, 881, 1181
TspGWI	ACGGA	2 cut(s)	368, 849
TspRI	CASTG	3 cut(s)	427, 1066, 1094
VneI	GTGCAC	1 cut(s)	934
VpaK11BI	GGWCC	3 cut(s)	394, 457, 605
XapI	RAATTY	1 cut(s)	1065
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	1005
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.