Rh6DG217800

Branched-chain-amino-acid aminotransferase-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001579
Physical Location & Seq
Reverse (-)
38823881 .. 38824617
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG217800.1

Sequence Viewer

Length: 621 bp
ATGAGTGCCGGTCCTGGTGATTTTTTGCTCCAACCTACAGGGTGCCCAACATCTGCATTCTATGCAGTAGTCATTGATGAGGACTTCAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCCTCTATTCCCATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCTAAATGTGAATGTAGCTTTTATAACACATGACAAGGAGCTTATTGTACCCTTCTTTGACAAGATCCTTGGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTTGAGTCGGGGCGTCTGAAAGGTGTGACAACTAGAAACATTAGTGTGGAAGAAGCCAAAAGCTCAGCGGAAATGATGTTTGTAGGAAGCACACTGCCACTGTTGCCAATTATCGCGTGGGACGAACAGCCCGTTGGCGATGGGAAGGTGGGAGAATTGACAATGGCACTCTCTGATCTGGTGTGGGATGAGAAGGTAGCAGGATCTACTGAAACACAGAGGACAGCAGTTCCCTACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

206

Amino Acids

22.32

Weight (kDa)

4.64

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 2 - 165 2.7e-23 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 42
AccII CGCG 1 cut(s) 494
AciI CCGC 1 cut(s) 446
AclWI GGATC 2 cut(s) 322, 589
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 391
AfaI GTAC 2 cut(s) 312, 343
AfiI CCNNNNNNNGG 1 cut(s) 351
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 2 cut(s) 88, 362
AjnI CCWGG 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 4 cut(s) 203, 281, 304, 441
AluI AGCT 4 cut(s) 203, 281, 304, 441
AlwI GGATC 2 cut(s) 322, 589
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 29, 132
AvaII GGWCC 1 cut(s) 11
BaeGI GKGCMC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 213
BccI CCATC 1 cut(s) 512
BciT130I CCWGG 1 cut(s) 15
BclI TGATCA 1 cut(s) 114
BfaI CTAG 2 cut(s) 365, 411
BfmI CTRYAG 1 cut(s) 36
BlpI GCTNAGC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 44, 217
BmrFI CCNGG 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 616
BsaHI GRCGYC 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 8
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 2 cut(s) 244, 571
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 494
BshNI GGYRCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 4 cut(s) 114, 327, 553, 581
Bsp1720I GCTNAGC 1 cut(s) 442
BspACI CCGC 1 cut(s) 446
BspCNI CTCAG 1 cut(s) 455
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 2 cut(s) 44, 217
BspPI GGATC 2 cut(s) 322, 589
BspT107I GGYRCC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 4 cut(s) 114, 327, 553, 581
BssNI GRCGYC 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 346, 480
BstACI GRCGYC 1 cut(s) 391
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 616
BstDEI CTNAG 1 cut(s) 442
BstF5I GGATG 2 cut(s) 244, 571
BstFNI CGCG 1 cut(s) 494
BstKTI GATC 4 cut(s) 117, 330, 556, 584
BstMBI GATC 4 cut(s) 114, 327, 553, 581
BstMWI GCNNNNNNNGC 2 cut(s) 62, 481
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 47
BstUI CGCG 1 cut(s) 494
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 327, 581
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 2 cut(s) 327, 581
BtgZI GCGATG 1 cut(s) 531
BtsCI GGATG 2 cut(s) 244, 571
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 3 cut(s) 98, 470, 476
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 311, 342
CviAII CATG 2 cut(s) 133, 293
CviJI RGCY 8 cut(s) 203, 218, 281, 304, 355, 434, 441, 508
CviKI_1 RGCY 8 cut(s) 203, 218, 281, 304, 355, 434, 441, 508
CviQI GTAC 2 cut(s) 311, 342
DdeI CTNAG 1 cut(s) 442
DpnI GATC 4 cut(s) 116, 329, 555, 583
DpnII GATC 4 cut(s) 114, 327, 553, 581
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 2 cut(s) 136, 296
FaiI YATR 7 cut(s) 63, 134, 230, 232, 254, 287, 294
FaqI GGGAC 1 cut(s) 512
FatI CATG 2 cut(s) 132, 292
FauNDI CATATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 114
FokI GGATG 2 cut(s) 251, 578
FspBI CTAG 2 cut(s) 365, 411
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 391
Hin1II CATG 2 cut(s) 136, 296
HinfI GANTC 1 cut(s) 383
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 29, 132
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 180, 396, 553
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 7 cut(s) 95, 185, 238, 254, 325, 517, 565
HpyCH4III ACNGT 2 cut(s) 346, 480
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 4 cut(s) 56, 65, 96, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 481
HpyF3I CTNAG 1 cut(s) 442
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 1 cut(s) 391
Hsp92II CATG 2 cut(s) 136, 296
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 4 cut(s) 114, 327, 553, 581
LmnI GCTCC 3 cut(s) 33, 215, 301
LpnPI CCDG 6 cut(s) 22, 24, 27, 156, 542, 564
MaeI CTAG 2 cut(s) 365, 411
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 3 cut(s) 138, 248, 403
MalI GATC 4 cut(s) 116, 329, 555, 583
MboI GATC 4 cut(s) 114, 327, 553, 581
MboII GAAGA 3 cut(s) 172, 218, 440
MflI RGATCY 2 cut(s) 327, 581
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 2 cut(s) 486, 533
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 73, 133, 591
MseI TTAA 2 cut(s) 108, 350
MslI CAYNNNNRTG 2 cut(s) 233, 422
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 2 cut(s) 62, 481
NdeI CATATG 1 cut(s) 230
NdeII GATC 4 cut(s) 114, 327, 553, 581
NlaIII CATG 2 cut(s) 136, 296
NlaIV GGNNCC 2 cut(s) 44, 217
NmuCI GTSAC 2 cut(s) 138, 403
PcsI WCGNNNNNNNCGW 2 cut(s) 498, 507
PctI GAATGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Ppu21I YACGTR 1 cut(s) 616
PsiI TTATAA 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 44, 217
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 2 cut(s) 327, 581
RsaI GTAC 2 cut(s) 312, 343
RsaNI GTAC 2 cut(s) 311, 342
RseI CAYNNNNRTG 2 cut(s) 233, 422
SaqAI TTAA 2 cut(s) 108, 350
Sau3AI GATC 4 cut(s) 114, 327, 553, 581
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 233, 422
Sse9I AATT 2 cut(s) 486, 533
SsiI CCGC 1 cut(s) 446
SspMI CTAG 2 cut(s) 365, 411
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 346, 480
TaiI ACGT 1 cut(s) 618
TasI AATT 2 cut(s) 486, 533
Tru1I TTAA 2 cut(s) 108, 350
Tru9I TTAA 2 cut(s) 108, 350
TscAI CASTG 3 cut(s) 98, 477, 483
TseFI GTSAC 2 cut(s) 138, 403
Tsp45I GTSAC 2 cut(s) 138, 403
TspDTI ATGAA 2 cut(s) 149, 173
TspRI CASTG 3 cut(s) 98, 477, 483
VpaK11BI GGWCC 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XspI CTAG 2 cut(s) 365, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.