Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Forward (+)

62743404 .. 62746672

Gene Structure 3269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG457200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAAGGCTAAAAACAAACCGCGAAAATCAAAAGGGTACACAAGAGTTTCTAGCCATGTATTCTAGCATTTTTGGAGGAATAACTACAGATCCATCTGCTATGGTGATCCCTATTGATGACCACATGGTCCACAGAGGGCATGGGGTTTTCGACACTGCTGCTATAAGGGACGGATATCTGTACGAGCTGGACCAGCACATTGACCGTATTTTGAGGTCAGCATCCATGGCCAAAATTGGCCTACCGTTTGATCGAGAAAGCATTAGAAAAATACTCATACAAACAGTGAGTGCTTCCAAGTGCAAAACAGGATCACTAAGGTACTGGCTCTCGGCAGGACCTGGTGATTTTCAGTTGTCTCCCTCTGGTTGCAATCAGCCAGCTCTTTATGCTATTGTAGTCCAAGACAAATCACCTTTTAGTTCAAAGGGTGTTAAAGCAGTAACGTCGTCAATCCCTATAAAACCACCCCAATTTGCGGTTATGAAGAGTGTGAATTATCTTCCGAATGTGCTTTCAAAGATGGAGGCTGAAGAAAAAGGTGCCTTTGCAGCGATTTGGCTGGATGGTGATGGATTTATTGCGGAAGGGCCTAACATGAATGTGGCTTTTGTTACAAAAGATAAGGAACTTCTGATGCCTCAGTTTGACAAAATACTAAGTGGCTGCACGGCTAAGAGAGTTTTGGCGCTTGCAGAAGGCCTGGTGATGGAGGGTAAGCTTCAGGGAGTGAGAGTCGTAAATGTGACTGTTGAGGAAGGGAAAAAGGCAGATGAGATGATGCTTATCGGCAGTGGAATTCTTGTTCGCCCTATAGTGCAATGGGACGAGCAGATCATTGGTGATGGTAAGAACTTAATTTCACTATGCTATGCGACCTTAGAATGCTTAGTTGACTTAAACACAAAGCATACAATGTACTTCTTTTCGTACATTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

314

Amino Acids

34.64

Weight (kDa)

6.6

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	49 - 276	5.9e-47	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	545
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	22, 482, 587
AclWI	GGATC	3 cut(s)	86, 103, 322
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	801
AcuI	CTGAAG	2 cut(s)	555, 710
AfaI	GTAC	5 cut(s)	40, 185, 326, 923, 935
AfiI	CCNNNNNNNGG	2 cut(s)	481, 712
AgsI	TTSAA	2 cut(s)	429, 522
AjnI	CCWGG	2 cut(s)	343, 705
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
AluBI	AGCT	3 cut(s)	190, 386, 724
AluI	AGCT	3 cut(s)	190, 386, 724
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	3 cut(s)	86, 103, 322
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	4 cut(s)	231, 241, 593, 703
ApeKI	GCWGC	3 cut(s)	161, 554, 669
ApoI	RAATTY	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	4 cut(s)	130, 193, 341, 593
AsuHPI	GGTGA	6 cut(s)	118, 359, 408, 584, 721, 857
AvaII	GGWCC	3 cut(s)	130, 193, 341
BalI	TGGCCA	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	545
BbvI	GCAGC	3 cut(s)	148, 566, 656
BccI	CCATC	6 cut(s)	103, 520, 563, 569, 706, 842
BceAI	ACGGC	1 cut(s)	690
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 432, 466
BciT130I	CCWGG	2 cut(s)	345, 707
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	2 cut(s)	53, 66
BfmI	CTRYAG	2 cut(s)	87, 816
BfoI	RGCGCY	1 cut(s)	695
BisI	GCNGC	3 cut(s)	162, 555, 670
BlsI	GCNGC	3 cut(s)	163, 556, 671
Bme1390I	CCNGG	2 cut(s)	345, 707
Bme18I	GGWCC	3 cut(s)	130, 193, 341
BmgT120I	GGNCC	4 cut(s)	130, 193, 341, 593
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	2 cut(s)	345, 707
BmsI	GCATC	3 cut(s)	233, 630, 774
BsaBI	GATNNNNATC	1 cut(s)	788
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 712
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	830
Bse8I	GATNNNNATC	1 cut(s)	788
BseBI	CCWGG	2 cut(s)	345, 707
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	224, 574
BseJI	GATNNNNATC	1 cut(s)	788
BseLI	CCNNNNNNNGG	2 cut(s)	481, 712
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	148, 566, 656
BsgI	GTGCAG	1 cut(s)	655
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	4 cut(s)	233, 243, 595, 705
BshNI	GGYRCC	1 cut(s)	545
BslFI	GGGAC	2 cut(s)	185, 842
BslI	CCNNNNNNNGG	2 cut(s)	481, 712
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	185, 842
BsmI	GAATGC	1 cut(s)	893
BsnI	GGCC	4 cut(s)	233, 243, 595, 705
Bsp143I	GATC	5 cut(s)	91, 108, 253, 314, 837
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	3 cut(s)	22, 482, 587
BspANI	GGCC	4 cut(s)	233, 243, 595, 705
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	547
BspPI	GGATC	3 cut(s)	86, 103, 322
BspT107I	GGYRCC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	830
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	5 cut(s)	91, 108, 253, 314, 837
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	345, 707
Bst4CI	ACNGT	4 cut(s)	209, 249, 289, 754
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	384, 696
BstDEI	CTNAG	6 cut(s)	320, 645, 662, 678, 883, 892
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	224, 574
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	5 cut(s)	94, 111, 256, 317, 840
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	5 cut(s)	91, 108, 253, 314, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 230, 392, 554
BstNI	CCWGG	2 cut(s)	345, 707
BstSCI	CCNGG	2 cut(s)	343, 705
BstSFI	CTRYAG	2 cut(s)	87, 816
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	148, 566, 656
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	4 cut(s)	233, 243, 595, 705
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	224, 574
BtsI	GCAGTG	2 cut(s)	156, 802
BtsIMutI	CAGTG	4 cut(s)	156, 294, 802, 940
Cac8I	GCNNGC	2 cut(s)	384, 696
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	694
Cfr13I	GGNCC	4 cut(s)	130, 193, 341, 593
CsiI	ACCWGGT	1 cut(s)	343
Csp6I	GTAC	5 cut(s)	39, 184, 325, 922, 934
CviAII	CATG	5 cut(s)	58, 127, 143, 229, 601
CviQI	GTAC	5 cut(s)	39, 184, 325, 922, 934
DdeI	CTNAG	6 cut(s)	320, 645, 662, 678, 883, 892
DpnI	GATC	5 cut(s)	93, 110, 255, 316, 839
DpnII	GATC	5 cut(s)	91, 108, 253, 314, 837
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	179
Eco47I	GGWCC	3 cut(s)	130, 193, 341
Eco57I	CTGAAG	2 cut(s)	555, 710
EcoO109I	RGGNCCY	2 cut(s)	341, 593
EcoRI	GAATTC	1 cut(s)	801
EcoRII	CCWGG	2 cut(s)	343, 705
EcoRV	GATATC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	5 cut(s)	61, 130, 146, 232, 604
FaqI	GGGAC	2 cut(s)	185, 842
FatI	CATG	5 cut(s)	57, 126, 142, 228, 600
Fnu4HI	GCNGC	3 cut(s)	162, 555, 670
FokI	GGATG	2 cut(s)	211, 581
Fsp4HI	GCNGC	3 cut(s)	162, 555, 670
FspBI	CTAG	2 cut(s)	53, 66
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	3 cut(s)	162, 555, 670
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	4 cut(s)	233, 243, 595, 705
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	5 cut(s)	61, 130, 146, 232, 604
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	1 cut(s)	738
HphI	GGTGA	6 cut(s)	118, 359, 408, 584, 721, 857
Hpy166II	GTNNAC	3 cut(s)	41, 133, 898
Hpy188I	TCNGA	2 cut(s)	510, 639
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	3 cut(s)	41, 133, 898
Hpy99I	CGWCG	1 cut(s)	454
HpyAV	CCTTC	3 cut(s)	584, 695, 755
HpyCH4III	ACNGT	4 cut(s)	209, 249, 289, 754
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	6 cut(s)	306, 375, 554, 672, 698, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 230, 392, 554
HpyF3I	CTNAG	6 cut(s)	320, 645, 662, 678, 883, 892
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	5 cut(s)	61, 130, 146, 232, 604
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	5 cut(s)	91, 108, 253, 314, 837
Lsp1109I	GCAGC	3 cut(s)	148, 566, 656
LweI	GCATC	3 cut(s)	233, 630, 774
MabI	ACCWGGT	1 cut(s)	343
MaeI	CTAG	2 cut(s)	53, 66
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	3 cut(s)	445, 616, 748
MalI	GATC	5 cut(s)	93, 110, 255, 316, 839
MboI	GATC	5 cut(s)	91, 108, 253, 314, 837
MboII	GAAGA	3 cut(s)	497, 502, 548
MflI	RGATCY	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	5 cut(s)	237, 476, 499, 801, 861
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	747
MnlI	CCTC	8 cut(s)	71, 131, 210, 376, 523, 654, 709, 751
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	3 cut(s)	438, 860, 902
MslI	CAYNNNNRTG	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	345, 707
Mva1269I	GAATGC	1 cut(s)	893
MvaI	CCWGG	2 cut(s)	345, 707
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	4 cut(s)	196, 230, 392, 554
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	5 cut(s)	91, 108, 253, 314, 837
NlaIII	CATG	5 cut(s)	61, 130, 146, 232, 604
NlaIV	GGNNCC	1 cut(s)	547
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	705
PctI	GAATGC	1 cut(s)	893
PkrI	GCNGC	3 cut(s)	163, 556, 671
PleI	GAGTC	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	746
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	343, 705
PspGI	CCWGG	2 cut(s)	343, 705
PspN4I	GGNNCC	1 cut(s)	547
PspPI	GGNCC	4 cut(s)	130, 193, 341, 593
PspPPI	RGGWCCY	1 cut(s)	341
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	5 cut(s)	40, 185, 326, 923, 935
RsaNI	GTAC	5 cut(s)	39, 184, 325, 922, 934
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	3 cut(s)	438, 860, 902
SatI	GCNGC	3 cut(s)	162, 555, 670
Sau3AI	GATC	5 cut(s)	91, 108, 253, 314, 837
Sau96I	GGNCC	4 cut(s)	130, 193, 341, 593
SchI	GAGTC	1 cut(s)	747
ScrFI	CCNGG	2 cut(s)	345, 707
SexAI	ACCWGGT	1 cut(s)	343
SfaNI	GCATC	3 cut(s)	233, 630, 774
SfcI	CTRYAG	2 cut(s)	87, 816
SinI	GGWCC	3 cut(s)	130, 193, 341
SmiMI	CAYNNNNRTG	1 cut(s)	605
Sse9I	AATT	5 cut(s)	237, 476, 499, 801, 861
SseBI	AGGCCT	1 cut(s)	705
SsiI	CCGC	3 cut(s)	22, 482, 587
SspMI	CTAG	2 cut(s)	53, 66
StuI	AGGCCT	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	343, 705
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	4 cut(s)	209, 249, 289, 754
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	2 cut(s)	153, 256
TasI	AATT	5 cut(s)	237, 476, 499, 801, 861
TatI	WGTACW	1 cut(s)	921
Tru1I	TTAA	3 cut(s)	438, 860, 902
Tru9I	TTAA	3 cut(s)	438, 860, 902
TscAI	CASTG	3 cut(s)	163, 294, 802
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	3 cut(s)	161, 554, 669
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	2 cut(s)	503, 617
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	163, 294, 802
VpaK11BI	GGWCC	3 cut(s)	130, 193, 341
XapI	RAATTY	1 cut(s)	801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	53, 66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.