Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001579

Physical Location & Seq

Genomic Coordinates Reverse (-)

38013046 .. 38015588

Gene Structure 2543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G451400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTTCCCTCCCATCTCTCCCAAAACCCATCTCGCAAAACCCACACTTTCCCACAAAACCAGCTGCCCATTCACATAGCTTGAACGTAATTCCACGAAATCATTCATTTTTGGGACATGGGTTGCTTAATTTTCAACATGGGTCGTTCAGAGCCAGAGAGACGAGGGTCATCAGAAGCTCGAACCAAACCGAAGCTGTGCCTGATTATAGCATTCAAGTCTCTGATGTTCCACTGCTGACTTGCTTAGAGGCAATTGAAAAGCTAAAAACATACCGGGAAAATCGACACGGTAAGCAGCAATTTCTCGCTATGTACTCTAGCATTTTTGGAGGAATCACAACTGATCCAGCTGCTATGGTGGTCCCCATTGATGACCACATGGTCCACAGAGGGCATGGTGTTTTCGACACTGCTGCTATAAGAGATGGGTATCTGTACGAGTTGGACCAGCACCTGGACCGTATTTTACGGTCAGCATCCATGGCCAAAATTGACATACCATTTGATCGAGAAAGCATAAGGAGAATACTCATACAAACTGTGAGTGCTTCCAAGTGCAAAACAGGATCACTAAGGTACTGGCTCTCGACGGGGCCTGGTGATTTTCAGTTATCTCCATCTGGCTGCCATCAGCCAGCTCTTTATGCTATTGTAATCCAAGATCTATCACCGTTCAATTCAAAGGGCGTTAAAGTAGTTACTTCATCAATCCCAATAAAACCTCCCCAATTTGCAACCATGAAGAGTGTGAATTATCTTCCAAATGTGCTTTCAAAGATGGAGGCTGAAGAAAAAGGTGCATTTGCAGCAATTTGGCTGGACCATGATGGATTCATTGCTGAAGGGCCTAACATGAATGTGGCTTTTGTTACAAAAGAGAAGGAACTTGTGATGCCTCAGTTTGACAAAATCCTAAGTGGATGCACAGCTAGGAGAGTTTTGGTTCTTGCAGAAGGGCTGGTGAGGGAGGGTAAGCTTCGGGGAGTAAGGATAGAAAATGTGACTGTTGAGGAAGGGAAGAAGGCAGATGAGATGATGCTTATCGGCAGTGGAATTCTCATTCGCCCTGTAGTGCAGTGGGATGAACAGGTCATTGGTGATGGCAAAGAAGGCTCCTTGACTCAGATTCTATTGAATCTTATTATTGAGGACATGAAGTCTGGCCCTCCTACTGTCCGAGCGCCTGTTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

400

Amino Acids

44.14

Weight (kDa)

8.24

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57850 AT5G57850
fragaria_vesca	FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_2g35980 FvH4_3g19330 FvH4_3g19330
malus_domestica	MD03G1234900.v1.1 MD11G1255500.v1.1 MD15G1096500.v1.1
prunus_persica	Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.1G451400_v2.0.a1 Prupe.4G174300_v2.0.a1 Prupe.4G174300_v2.0.a1
pyrus_communis	pycom03g18150 pycom11g22580 pycom15g08860
rosa_chinensis	RchiOBHm_Chr5g0032391 RchiOBHm_Chr6g0277671 RchiOBHm_Chr6g0305891
rosa_laevigata	RLG00000010849 RLG00000033394
rosa_multiflora	Rmu_sc0002818.1_g000006 Rmu_sc0006926.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048040 Rroxscaffold_7G00162240
rosa_rugosa	Rorug05G0131700.1 Rorug06G0344700 Rorug06G0344800
rosa_samantha	Rh1DG018000 Rh5AG224900 Rh5BG226000 Rh5CG251400 Rh5DG230600 Rh6AG456600 Rh6BG444700 Rh6CG470500 Rh6DG217800 Rh6DG457200 Rh7AG381300 Rh7CG400800 Rh7DG257300
rosa_wichuraiana	Rw2G028520 Rw5G020540 Rw6G039830 Rw7G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	457
AclWI	GGATC	2 cut(s)	341, 577
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	1056
AcuI	CTGAAG	2 cut(s)	810, 864
AfaI	GTAC	3 cut(s)	317, 440, 581
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	8 cut(s)	85, 137, 218, 260, 679, 684, 777, 1138
AhdI	GACNNNNNGTC	1 cut(s)	1159
AjnI	CCWGG	2 cut(s)	456, 598
AjuI	GAANNNNNNNTTGG	4 cut(s)	757, 789, 1080, 1112
AluBI	AGCT	9 cut(s)	65, 81, 180, 197, 265, 353, 641, 932, 979
AluI	AGCT	9 cut(s)	65, 81, 180, 197, 265, 353, 641, 932, 979
Alw26I	GTCTC	2 cut(s)	155, 226
AlwI	GGATC	2 cut(s)	341, 577
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	4 cut(s)	486, 596, 848, 1165
ApeKI	GCWGC	6 cut(s)	65, 298, 353, 416, 627, 809
ApoI	RAATTY	1 cut(s)	1056
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
Asp700I	GAANNNNTTC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	1186
AspS9I	GGNCC	8 cut(s)	364, 385, 448, 460, 596, 823, 848, 1166
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	4 cut(s)	614, 663, 976, 1112
AvaII	GGWCC	5 cut(s)	364, 385, 448, 460, 823
BalI	TGGCCA	1 cut(s)	488
BbvI	GCAGC	6 cut(s)	52, 310, 340, 403, 614, 821
BccI	CCATC	8 cut(s)	22, 38, 422, 628, 639, 775, 824, 1097
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	458, 600
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	155, 226
BfaI	CTAG	2 cut(s)	321, 933
BfmI	CTRYAG	1 cut(s)	1071
BfoI	RGCGCY	1 cut(s)	1187
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	6 cut(s)	66, 299, 354, 417, 628, 810
BlsI	GCNGC	6 cut(s)	67, 300, 355, 418, 629, 811
Bme1390I	CCNGG	3 cut(s)	278, 458, 600
Bme18I	GGWCC	5 cut(s)	364, 385, 448, 460, 823
BmeRI	GACNNNNNGTC	1 cut(s)	1159
BmgT120I	GGNCC	8 cut(s)	364, 385, 448, 460, 596, 823, 848, 1166
BmiI	GGNNCC	3 cut(s)	366, 597, 1117
BmrFI	CCNGG	3 cut(s)	278, 458, 600
BmsI	GCATC	4 cut(s)	488, 885, 914, 1029
BoxI	GACNNNNGTC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	278
BsaBI	GATNNNNATC	2 cut(s)	432, 1043
BsaJI	CCNNGG	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	837
Bse8I	GATNNNNATC	2 cut(s)	432, 1043
BseBI	CCWGG	2 cut(s)	458, 600
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	3 cut(s)	479, 929, 1090
BseJI	GATNNNNATC	2 cut(s)	432, 1043
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	914, 1139
BseNI	ACTGG	1 cut(s)	587
BseXI	GCAGC	6 cut(s)	52, 310, 340, 403, 614, 821
BsgI	GTGCAG	1 cut(s)	1097
BshFI	GGCC	4 cut(s)	488, 598, 850, 1167
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	2 cut(s)	129, 350
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	155, 226
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	129, 350
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	4 cut(s)	488, 598, 850, 1167
Bsp143I	GATC	4 cut(s)	346, 508, 569, 664
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	4 cut(s)	488, 598, 850, 1167
BspCNI	CTCAG	2 cut(s)	913, 1138
BspLI	GGNNCC	3 cut(s)	366, 597, 1117
BspPI	GGATC	2 cut(s)	341, 577
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	4 cut(s)	346, 508, 569, 664
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	2 cut(s)	458, 600
Bst4CI	ACNGT	7 cut(s)	293, 464, 474, 544, 675, 1009, 1177
Bst6I	CTCTTC	1 cut(s)	740
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	5 cut(s)	247, 575, 900, 917, 1125
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	479, 929, 1090
BstH2I	RGCGCY	1 cut(s)	1187
BstHHI	GCGC	1 cut(s)	1186
BstKTI	GATC	4 cut(s)	349, 511, 572, 667
BstMAI	GTCTC	2 cut(s)	155, 226
BstMBI	GATC	4 cut(s)	346, 508, 569, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	485, 647, 809, 1113
BstNI	CCWGG	2 cut(s)	458, 600
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	3 cut(s)	276, 456, 598
BstSFI	CTRYAG	1 cut(s)	1071
BstV1I	GCAGC	6 cut(s)	52, 310, 340, 403, 614, 821
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	4 cut(s)	488, 598, 850, 1167
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	479, 929, 1090
BtsI	GCAGTG	4 cut(s)	233, 411, 1057, 1085
BtsIMutI	CAGTG	4 cut(s)	233, 411, 1057, 1085
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	1 cut(s)	1186
Cfr13I	GGNCC	8 cut(s)	364, 385, 448, 460, 596, 823, 848, 1166
Csp6I	GTAC	3 cut(s)	316, 439, 580
CviAII	CATG	9 cut(s)	119, 140, 382, 398, 484, 742, 827, 856, 1156
CviQI	GTAC	3 cut(s)	316, 439, 580
DdeI	CTNAG	5 cut(s)	247, 575, 900, 917, 1125
DpnI	GATC	4 cut(s)	348, 510, 571, 666
DpnII	GATC	4 cut(s)	346, 508, 569, 664
DrdI	GACNNNNNNGTC	1 cut(s)	383
DriI	GACNNNNNGTC	1 cut(s)	1159
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	740
Eam1105I	GACNNNNNGTC	1 cut(s)	1159
EarI	CTCTTC	1 cut(s)	740
Eco130I	CCWWGG	1 cut(s)	483
Eco47I	GGWCC	5 cut(s)	364, 385, 448, 460, 823
Eco57I	CTGAAG	2 cut(s)	810, 864
EcoO109I	RGGNCCY	2 cut(s)	596, 848
EcoRI	GAATTC	1 cut(s)	1056
EcoRII	CCWGG	2 cut(s)	456, 598
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	9 cut(s)	122, 143, 385, 401, 487, 745, 830, 859, 1159
FaqI	GGGAC	2 cut(s)	129, 350
FatI	CATG	9 cut(s)	118, 139, 381, 397, 483, 741, 826, 855, 1155
Fnu4HI	GCNGC	6 cut(s)	66, 299, 354, 417, 628, 810
FokI	GGATG	3 cut(s)	466, 936, 1097
Fsp4HI	GCNGC	6 cut(s)	66, 299, 354, 417, 628, 810
FspBI	CTAG	2 cut(s)	321, 933
GlaI	GCGC	1 cut(s)	1185
GluI	GCNGC	6 cut(s)	66, 299, 354, 417, 628, 810
HaeII	RGCGCY	1 cut(s)	1187
HaeIII	GGCC	4 cut(s)	488, 598, 850, 1167
HapII	CCGG	1 cut(s)	277
HhaI	GCGC	1 cut(s)	1186
Hin1II	CATG	9 cut(s)	122, 143, 385, 401, 487, 745, 830, 859, 1159
Hin6I	GCGC	1 cut(s)	1184
HinP1I	GCGC	1 cut(s)	1184
HindIII	AAGCTT	1 cut(s)	977
HinfI	GANTC	5 cut(s)	336, 834, 1123, 1129, 1138
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	4 cut(s)	614, 663, 976, 1112
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	5 cut(s)	152, 176, 226, 1128, 1181
Hpy188III	TCNNGA	2 cut(s)	512, 589
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	6 cut(s)	839, 877, 950, 1010, 1018, 1106
HpyCH4III	ACNGT	7 cut(s)	293, 464, 474, 544, 675, 1009, 1177
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	7 cut(s)	561, 737, 803, 809, 927, 953, 1078
HpyF10VI	GCNNNNNNNGC	4 cut(s)	485, 647, 809, 1113
HpyF3I	CTNAG	5 cut(s)	247, 575, 900, 917, 1125
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	9 cut(s)	122, 143, 385, 401, 487, 745, 830, 859, 1159
HspAI	GCGC	1 cut(s)	1184
Kzo9I	GATC	4 cut(s)	346, 508, 569, 664
LmnI	GCTCC	1 cut(s)	1121
Lsp1109I	GCAGC	6 cut(s)	52, 310, 340, 403, 614, 821
LweI	GCATC	4 cut(s)	488, 885, 914, 1029
MaeI	CTAG	2 cut(s)	321, 933
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	700, 871, 1003
MalI	GATC	4 cut(s)	348, 510, 571, 666
MboI	GATC	4 cut(s)	346, 508, 569, 664
MboII	GAAGA	4 cut(s)	752, 757, 803, 1033
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	664
MlsI	TGGCCA	1 cut(s)	488
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	1117
MmeI	TCCRAC	1 cut(s)	426
Mox20I	TGGCCA	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	2 cut(s)	129, 693
MslI	CAYNNNNRTG	1 cut(s)	860
Msp20I	TGGCCA	1 cut(s)	488
MspA1I	CMGCKG	2 cut(s)	65, 353
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	3 cut(s)	278, 458, 600
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	2 cut(s)	458, 600
MwoI	GCNNNNNNNGC	4 cut(s)	485, 647, 809, 1113
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	4 cut(s)	346, 508, 569, 664
NlaIII	CATG	9 cut(s)	122, 143, 385, 401, 487, 745, 830, 859, 1159
NlaIV	GGNNCC	3 cut(s)	366, 597, 1117
NmuCI	GTSAC	1 cut(s)	1003
PctI	GAATGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	4 cut(s)	336, 834, 1129, 1138
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	6 cut(s)	67, 300, 355, 418, 629, 811
PleI	GAGTC	1 cut(s)	1117
PpsI	GAGTC	1 cut(s)	1117
PshAI	GACNNNNGTC	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	456, 598
PspGI	CCWGG	2 cut(s)	456, 598
PspN4I	GGNNCC	3 cut(s)	366, 597, 1117
PspPI	GGNCC	8 cut(s)	364, 385, 448, 460, 596, 823, 848, 1166
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	664
PvuII	CAGCTG	2 cut(s)	65, 353
RsaI	GTAC	3 cut(s)	317, 440, 581
RsaNI	GTAC	3 cut(s)	316, 439, 580
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	129, 693
SatI	GCNGC	6 cut(s)	66, 299, 354, 417, 628, 810
Sau3AI	GATC	4 cut(s)	346, 508, 569, 664
Sau96I	GGNCC	8 cut(s)	364, 385, 448, 460, 596, 823, 848, 1166
SchI	GAGTC	1 cut(s)	1117
ScrFI	CCNGG	3 cut(s)	278, 458, 600
SfaNI	GCATC	4 cut(s)	488, 885, 914, 1029
SfcI	CTRYAG	1 cut(s)	1071
SinI	GGWCC	5 cut(s)	364, 385, 448, 460, 823
SmiMI	CAYNNNNRTG	1 cut(s)	860
SspMI	CTAG	2 cut(s)	321, 933
StyD4I	CCNGG	3 cut(s)	276, 456, 598
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	7 cut(s)	293, 464, 474, 544, 675, 1009, 1177
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	5 cut(s)	182, 286, 408, 511, 590
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	4 cut(s)	336, 834, 1129, 1138
Tru1I	TTAA	2 cut(s)	129, 693
Tru9I	TTAA	2 cut(s)	129, 693
TscAI	CASTG	4 cut(s)	240, 418, 1057, 1085
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	6 cut(s)	65, 298, 353, 416, 627, 809
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	7 cut(s)	96, 696, 758, 826, 872, 1101, 1172
TspRI	CASTG	4 cut(s)	240, 418, 1057, 1085
Van91I	CCANNNNNTGG	1 cut(s)	457
VpaK11BI	GGWCC	5 cut(s)	364, 385, 448, 460, 823
XapI	RAATTY	1 cut(s)	1056
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	2 cut(s)	321, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.