AT5G58610

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001222
Physical Location & Seq
Reverse (-)
23686079 .. 23691394
5316 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58610.11

Sequence Viewer

Length: 3198 bp
ATGGGTCTTTTTGATTGTAGGGTTTATAGGGTTTTTCATTTTCTCAACCTTTTGAGCAATTTCGGATTTTTTTCAAGGAGTCTTGAAGAGGGGTCTCTGGGTTCTTGGTATTTAGGAACTGTAACTTCAGCTAAAAAGCGACGTCGGCGTTGTATCAGATATGACAACATTCTCTCTGATGATGGTTCTGGTAATCTTGTGGAAACTGTTGATGTTTCTGATATAGTAGAAGGGTTGGATGATTGCACTGATGTTTCTGATACTTTCCGTGGACGTTTAAGACCTGTGCCGCCAAAGCTGGATGTTGCTAAACTGAACCTTGCGTATGGGCTCTGCGTCGATGTGTTTTTCAGTGATGCTTGGTGGGAAGGTGTGCTCTTTGACCACGAGAATGGTTCTGAGAAAAGGAGGGTGTTTTTCCCTGATTTGGGTGATGAATTGGATGCTGATCTTCAATCTTTACGTATTACTCAGGATTGGAATGAGGCTACAGAGACGTGGGAGTGTCGTGGCAGTTGGTTGTTTCTTGATTTGATTGAGATATATAAGGAATATAACTATCTCCCGGTTTCGGTAAAGCAACTTTGGTATGACATACGAGACAGGATTGGTTTTGTAAGAATTCAAGAATGGACTTGCTCTACTAAGCATTTATGGCAAGATTTGATGCTGGGGGTGATTGAAGATAATCTTAAAATCACCATTGACCAGTTTCTTCATGATTTTGACGCTGAAAGATACCCTCAATTGAAGCTCTTAAATGAAGCTTCTCAGGCGGTTTATGAGACCAATGCTTGTCTTAGCGGTATGCTAACGATTGCTCCACAAGAACACCAATTTTCCTGCATTGACAAAGATTTCAAACCGGCAAGCCAGAGATGCCAGTCCTTGTCTGTCTTGACTTCTGTTTCTGGCATAAGGTCAGAGGCGAGTGACATCAATAAGGCAACAGAAATTTCCAGCAAGAAATCTACTGCCGCTCATAAAAAGGATATACTACACAAGAAACCTGGAATCTGGCATCCTTTCGACTGTCTTGCTAAATCAGGCCCACAAGCTGTGTCGAGCTTTATCAGGTCACCGTTACTGCCCATGGCCATGCATGTCAGGATGCATCTTAAGTATATGGGATGGACCATAGAACATATGGTAGACGAAGCTGGAAGGCAAAGGTTTCGCTACCTCTCACCAAATGGAAGACTAAAAGAGCATTCTCTTCGTCAAGTATGTTTCAGACTGAAACAACCTGATAAATCCCTGACTACTCCGGGGATGGCTAACCCTCCTTCTCTGTCTAGTGAAAACCAGACGTATAGCACCCAGGAAATGAGGTCTATTGTTTTGGCATTGCCTGCCTTTAATAGAAGTGTCGCTCTTGGTGAAGGATTGAAGCTGTCTACTGATACCTTGCTTGAGTATGAAACGCAAGGAAACGAGGAGGTCTTTACGAGAGAAAGCCGCAATTTTTGTCCCAAAAAAGCCTTTCCGGGTCAGAAAGAGACACTCCGTGTCAGGATCGAGCCAAAAACAAAAGCTCAAGGCATCATCCTAAGGTTAAAAAGTAAGCGTAAACAGACACCTAAGAAGGACGAAGTGATTGTAGGTTTACAGAATGTCAATCGGAGCATGAGAAGGGGGCACACTTCAAAAAAGTTAATGGATATCAAGAATCGAGTAACTAGTCGTGGTAAAACCCGTGTGTTACGATCAAGAAAAAGAGCGCAACGAGTAATAACTCCCATCTCAAGAAAGCACAGTCCACGAAATATTCTTTCCTGGCTCATGGACAACAATGTGGTTCTACCAAGGGAAAATATACGATGCTGTAACCAAAAGGATACAACTGTGAGAAAAGAGGGGAAACTAACCCGTGAGGGAATAAAATGCAGTTGTTGCCGTAGAGTTTTCACCATAAATGGCTTTGAAGTTCATGCTAATGGTGCATCCTGCAGCGGAGCAGCCAATATTTTCCTGGATGATGGAAGATCTCTTTTGGAATGCCAAGTAGAAGCCTATAAAAAAAGAAAGAAAGCACAACCACCTGATATGTTGAAGATGAAATTGCGTCAAGGGGAGAACGATGTATTTTGCTCCGTTTGTCACTATGGTGGCAAACTGATTCTCTGTGATGGATGTCCATCCGCCTTCCATGCAAATTGTCTTGGGCTGGAGGATGTTCCAGATGGTGATTGGTTCTGCCAGTCATGTTGTTGTGGTGCATGTGGACAATTCTTTCTAAAGACTACTAGCACAAATGCCAAGGAGGAAAAGTTTATCAGTTGCAAGCAATGCGAACTTAAGTATCACCCTAGTTGCTTGCGTTATGATGGTGCCTGTGATTCATTGGATAAAATCTTGGGAGAAAAGTGGTTTTGCAGCAAGGACTGTGAAGAGTCCTTGGAACCAAATATGTATGGAGATGACGCTTCTAAAATTGAGGCTGCGGCAGAAAATCACTGCATACTCAGTGTTGCCCTTGATGTGATGCATGAACTTTTCGAGCCTGTAAAAAGACCTCATGGTGGAAGAGATCTTGCTGAAGATGTTATTTTTAGCAGATGGTCAAAATTCAAACGTTTGAACTTCAGTGGATTTTACACGGTACTTCTAGAAAGGAACAACGAACTGGTTTCTGTGGCTACTGTTAGAATTTTGGGGAAAAAGGTTGCAGAAATGCCCTTTATTGGTACTAGATTCCAGCATCGCCAGCGTGGGATGTGCCGGGTTTTGATTAATGAACTCGAAAAGGTGCTCATTGACTTGGGAGTAGAGAGGTTGGTCCTGCCTGCAGTTCCATGCGTGCTGAACACATGGATCAACTCATTTGGATTTACAAAGATGACAATCTCCGAAAGAAAAAACTTTCTGAAATTTACCTTGTTGGAGTTCGGACGAACAATATTGTGCGAGAAGATCTTGATCAAGAGCGGCGTAGCAGATCCAATTCCAAGTATAGCATCTCTAGGTGAACAACAGTGTGACATCCTCAGGATTGAAGACAATTCTGCTTCTGATGATGGATCAGAAGTACATCAGGCAGAACAGCACCTCGAGGAGTCTAGGTCCACTAAAAATCCACCAGAGTATGTTGTTCAAACTCTCACTCCTCTCCATCATAATCCAAAAACACCAACAACGAGAAAAAAAAAACATGATACAAATGCCTTGCATGGGTCCTGGGAGAGAACCAATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

1065

Amino Acids

121.33

Weight (kDa)

8.67

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 26 - 98 7.3e-12 Agenet domain
DUF7028 PF22970 364 - 414 2.1e-12 Domain of unknown function (DUF7028)
TDBD PF16135 620 - 671 1.6e-18 Tify domain binding domain
PHD-1st_NSD PF23011 694 - 736 1.1e-07 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD PF00628 697 - 736 3.4e-08 PHD-finger
IDM1_C PF23209 859 - 909 2.4e-12 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 145
AbsI CCTCGAGG 1 cut(s) 3050
AccB1I GGYRCC 1 cut(s) 2330
AccBSI CCGCTC 2 cut(s) 980, 2928
AccI GTMKAC 2 cut(s) 1152, 1397
AciI CCGC 9 cut(s) 290, 776, 804, 978, 1459, 1953, 2142, 2444, 2928
AclI AACGTT 1 cut(s) 2575
AclWI GGATC 4 cut(s) 1523, 2822, 2933, 3028
AcoI YGGCCR 1 cut(s) 1095
AcsI RAATTY 5 cut(s) 621, 954, 2567, 2649, 2870
AcuI CTGAAG 3 cut(s) 111, 2559, 2569
AcyI GRCGYC 1 cut(s) 142
AdeI CACNNNGTG 1 cut(s) 1508
AfaI GTAC 3 cut(s) 2604, 2689, 3030
AfiI CCNNNNNNNGG 6 cut(s) 427, 428, 571, 2522, 2684, 3171
AflII CTTAAG 2 cut(s) 1118, 2297
AhlI ACTAGT 1 cut(s) 1679
AjiI CACGTC 1 cut(s) 498
AjnI CCWGG 5 cut(s) 1009, 1320, 1775, 1971, 3176
AleI CACNNNNGTG 1 cut(s) 2106
AluBI AGCT 9 cut(s) 131, 298, 754, 767, 1058, 1068, 1160, 1393, 1535
AluI AGCT 9 cut(s) 131, 298, 754, 767, 1058, 1068, 1160, 1393, 1535
Alw21I GWGCWC 2 cut(s) 378, 2754
Alw26I GTCTC 5 cut(s) 99, 488, 594, 779, 1493
AlwI GGATC 4 cut(s) 1523, 2822, 2933, 3028
Ama87I CYCGRG 1 cut(s) 3050
AoxI GGCC 2 cut(s) 1048, 1095
ApeKI GCWGC 4 cut(s) 1950, 1958, 2376, 2441
ApoI RAATTY 5 cut(s) 621, 954, 2567, 2649, 2870
AseI ATTAAT 1 cut(s) 2733
AspLEI GCGC 1 cut(s) 1723
AspS9I GGNCC 5 cut(s) 1049, 1134, 2779, 3063, 3174
AsuC2I CCSGG 4 cut(s) 566, 1269, 1488, 2723
AvaI CYCGRG 1 cut(s) 3050
AvaII GGWCC 4 cut(s) 1134, 2779, 3063, 3174
AxyI CCTNAGG 2 cut(s) 1550, 2987
BaeGI GKGCMC 1 cut(s) 1641
BaeI ACNNNNGTAYC 4 cut(s) 1830, 1863, 2285, 2318
BalI TGGCCA 1 cut(s) 1097
BanI GGYRCC 1 cut(s) 2330
BanII GRGCYC 1 cut(s) 333
BauI CACGAG 1 cut(s) 386
BbsI GAAGAC 2 cut(s) 1204, 3003
Bbv12I GWGCWC 2 cut(s) 378, 2754
BbvI GCAGC 4 cut(s) 1962, 1970, 2388, 2428
BceAI ACGGC 1 cut(s) 1881
BcgI CGANNNNNNTGC 6 cut(s) 1019, 1053, 1157, 1191, 1199, 1233
BciT130I CCWGG 5 cut(s) 1011, 1322, 1777, 1973, 3178
BciVI GTATCC 1 cut(s) 1831
BclI TGATCA 1 cut(s) 2919
BcnI CCSGG 4 cut(s) 566, 1269, 1488, 2723
BcoDI GTCTC 5 cut(s) 99, 488, 594, 779, 1493
BcuI ACTAGT 1 cut(s) 1679
BfaI CTAG 8 cut(s) 1296, 1680, 2247, 2310, 2609, 2691, 2963, 3060
BfmI CTRYAG 3 cut(s) 489, 1948, 2787
BfrI CTTAAG 2 cut(s) 1118, 2297
BfuI GTATCC 1 cut(s) 1831
BglII AGATCT 3 cut(s) 1985, 2530, 2913
BisI GCNGC 9 cut(s) 290, 978, 1459, 1951, 1959, 2377, 2442, 2445, 2929
BlsI GCNGC 9 cut(s) 291, 979, 1460, 1952, 1960, 2378, 2443, 2446, 2930
Bme1390I CCNGG 9 cut(s) 566, 1011, 1269, 1322, 1488, 1777, 1973, 2723, 3178
Bme18I GGWCC 4 cut(s) 1134, 2779, 3063, 3174
BmeT110I CYCGRG 1 cut(s) 3050
BmgBI CACGTC 1 cut(s) 498
BmgT120I GGNCC 5 cut(s) 1049, 1134, 2779, 3063, 3174
BmiI GGNNCC 3 cut(s) 2332, 2403, 3175
BmrFI CCNGG 9 cut(s) 566, 1011, 1269, 1322, 1488, 1777, 1973, 2723, 3178
BpiI GAAGAC 2 cut(s) 1204, 3003
BpmI CTGGAG 1 cut(s) 2189
BpuEI CTTGAG 3 cut(s) 1433, 1521, 1729
BpuMI CCSGG 4 cut(s) 566, 1269, 1488, 2723
BsaAI YACGTR 1 cut(s) 464
BsaBI GATNNNNATC 4 cut(s) 447, 2137, 2843, 2918
BsaHI GRCGYC 1 cut(s) 142
BsaI GGTCTC 2 cut(s) 99, 779
BsaJI CCNNGG 8 cut(s) 268, 1092, 1268, 1320, 1805, 2259, 2397, 3177
BsaXI ACNNNNNCTCC 8 cut(s) 805, 835, 2255, 2285, 3047, 3077, 3088, 3118
Bsc4I CCNNNNNNNGG 6 cut(s) 427, 428, 571, 2522, 2684, 3171
Bse118I RCCGGY 1 cut(s) 865
Bse1I ACTGG 4 cut(s) 709, 883, 2200, 2631
Bse21I CCTNAGG 2 cut(s) 1550, 2987
Bse3DI GCAATG 2 cut(s) 1346, 2294
Bse8I GATNNNNATC 4 cut(s) 447, 2137, 2843, 2918
BseBI CCWGG 5 cut(s) 1011, 1322, 1777, 1973, 3178
BseDI CCNNGG 8 cut(s) 268, 1092, 1268, 1320, 1805, 2259, 2397, 3177
BseJI GATNNNNATC 4 cut(s) 447, 2137, 2843, 2918
BseLI CCNNNNNNNGG 6 cut(s) 427, 428, 571, 2522, 2684, 3171
BseMI GCAATG 2 cut(s) 1346, 2294
BseMII CTCAG 5 cut(s) 390, 485, 785, 2479, 3001
BseNI ACTGG 4 cut(s) 709, 883, 2200, 2631
BseRI GAGGAG 3 cut(s) 1451, 3068, 3096
BseSI GKGCMC 1 cut(s) 1641
BseXI GCAGC 4 cut(s) 1962, 1970, 2388, 2428
BseYI CCCAGC 1 cut(s) 670
BshFI GGCC 2 cut(s) 1050, 1097
BshNI GGYRCC 1 cut(s) 2330
BsiHKAI GWGCWC 2 cut(s) 378, 2754
BsiHKCI CYCGRG 1 cut(s) 3050
BsiSI CCGG 5 cut(s) 566, 866, 1268, 1487, 2722
BslFI GGGAC 1 cut(s) 1455
BslI CCNNNNNNNGG 6 cut(s) 427, 428, 571, 2522, 2684, 3171
BsmAI GTCTC 5 cut(s) 99, 488, 594, 779, 1493
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 1455
BsmI GAATGC 2 cut(s) 1210, 2003
BsnI GGCC 2 cut(s) 1050, 1097
Bso31I GGTCTC 2 cut(s) 99, 779
BsoBI CYCGRG 1 cut(s) 3050
Bsp1286I GDGCHC 4 cut(s) 333, 378, 1641, 2754
Bsp19I CCATGG 1 cut(s) 1092
BspACI CCGC 9 cut(s) 290, 776, 804, 978, 1459, 1953, 2142, 2444, 2928
BspANI GGCC 2 cut(s) 1050, 1097
BspCNI CTCAG 5 cut(s) 391, 484, 784, 2478, 3000
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 2332, 2403, 3175
BspMAI CTGCAG 2 cut(s) 1952, 2791
BspPI GGATC 4 cut(s) 1523, 2822, 2933, 3028
BspT107I GGYRCC 1 cut(s) 2330
BspTI CTTAAG 2 cut(s) 1118, 2297
BspTNI GGTCTC 2 cut(s) 99, 779
BsrBI CCGCTC 2 cut(s) 980, 2928
BsrDI GCAATG 2 cut(s) 1346, 2294
BsrFI RCCGGY 1 cut(s) 865
BsrI ACTGG 4 cut(s) 709, 883, 2200, 2631
BssAI RCCGGY 1 cut(s) 865
BssECI CCNNGG 8 cut(s) 268, 1092, 1268, 1320, 1805, 2259, 2397, 3177
BssNI GRCGYC 1 cut(s) 142
BssSI CACGAG 1 cut(s) 386
BssT1I CCWWGG 4 cut(s) 1092, 1805, 2259, 2397
Bst2BI CACGAG 1 cut(s) 386
Bst2UI CCWGG 5 cut(s) 1011, 1322, 1777, 1973, 3178
Bst6I CTCTTC 4 cut(s) 81, 1221, 2385, 2521
BstACI GRCGYC 1 cut(s) 142
BstAFI CTTAAG 2 cut(s) 1118, 2297
BstAPI GCANNNNNTGC 3 cut(s) 1352, 1893, 2289
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 7 cut(s) 871, 1353, 2285, 2318, 2708, 2787, 2801
BstDEI CTNAG 9 cut(s) 399, 471, 645, 771, 800, 1550, 1581, 2465, 2987
BstDSI CCRYGG 2 cut(s) 268, 1092
BstEII GGTNACC 1 cut(s) 1077
BstHHI GCGC 1 cut(s) 1723
BstMAI GTCTC 5 cut(s) 99, 488, 594, 779, 1493
BstNI CCWGG 5 cut(s) 1011, 1322, 1777, 1973, 3178
BstNSI RCATGY 2 cut(s) 1106, 2223
BstPI GGTNACC 1 cut(s) 1077
BstSCI CCNGG 9 cut(s) 564, 1009, 1267, 1320, 1486, 1775, 1971, 2721, 3176
BstSFI CTRYAG 3 cut(s) 489, 1948, 2787
BstSLI GKGCMC 1 cut(s) 1641
BstSNI TACGTA 1 cut(s) 464
BstV1I GCAGC 4 cut(s) 1962, 1970, 2388, 2428
BstV2I GAAGAC 2 cut(s) 1204, 3003
BstX2I RGATCY 4 cut(s) 1985, 2530, 2913, 2938
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 4 cut(s) 1985, 2530, 2913, 2938
Bsu36I CCTNAGG 2 cut(s) 1550, 2987
BsuI GTATCC 1 cut(s) 1831
BsuRI GGCC 2 cut(s) 1050, 1097
BtgI CCRYGG 2 cut(s) 268, 1092
BtgZI GCGATG 1 cut(s) 2687
BtrI CACGTC 1 cut(s) 498
BtsI GCAGTG 1 cut(s) 2455
BtsIMutI CAGTG 6 cut(s) 246, 358, 2455, 2473, 2593, 2981
Cac8I GCNNGC 7 cut(s) 871, 1353, 2285, 2318, 2708, 2787, 2801
CciI TCATGA 1 cut(s) 718
CfoI GCGC 1 cut(s) 1723
Cfr10I RCCGGY 1 cut(s) 865
Cfr13I GGNCC 5 cut(s) 1049, 1134, 2779, 3063, 3174
CseI GACGC 4 cut(s) 325, 737, 2054, 2432
Csp6I GTAC 3 cut(s) 2603, 2688, 3029
CviQI GTAC 3 cut(s) 2603, 2688, 3029
DdeI CTNAG 9 cut(s) 399, 471, 645, 771, 800, 1550, 1581, 2465, 2987
DraIII CACNNNGTG 1 cut(s) 1508
EaeI YGGCCR 1 cut(s) 1095
Eam1104I CTCTTC 4 cut(s) 81, 1221, 2385, 2521
EarI CTCTTC 4 cut(s) 81, 1221, 2385, 2521
EciI GGCGGA 1 cut(s) 2131
Eco105I TACGTA 1 cut(s) 464
Eco130I CCWWGG 4 cut(s) 1092, 1805, 2259, 2397
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 2 cut(s) 99, 779
Eco32I GATATC 1 cut(s) 1663
Eco47I GGWCC 4 cut(s) 1134, 2779, 3063, 3174
Eco57I CTGAAG 3 cut(s) 111, 2559, 2569
Eco81I CCTNAGG 2 cut(s) 1550, 2987
Eco88I CYCGRG 1 cut(s) 3050
Eco91I GGTNACC 1 cut(s) 1077
EcoO109I RGGNCCY 1 cut(s) 3174
EcoO65I GGTNACC 1 cut(s) 1077
EcoRI GAATTC 1 cut(s) 621
EcoRII CCWGG 5 cut(s) 1009, 1320, 1775, 1971, 3176
EcoRV GATATC 1 cut(s) 1663
EcoT14I CCWWGG 4 cut(s) 1092, 1805, 2259, 2397
EcoT22I ATGCAT 3 cut(s) 1104, 1116, 2490
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 4 cut(s) 1092, 1805, 2259, 2397
Esp3I CGTCTC 1 cut(s) 488
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FaqI GGGAC 1 cut(s) 1455
FauNDI CATATG 1 cut(s) 1146
FbaI TGATCA 1 cut(s) 2919
FblI GTMKAC 2 cut(s) 1152, 1397
Fnu4HI GCNGC 9 cut(s) 290, 978, 1459, 1951, 1959, 2377, 2442, 2445, 2929
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 9 cut(s) 290, 978, 1459, 1951, 1959, 2377, 2442, 2445, 2929
FspBI CTAG 8 cut(s) 1296, 1680, 2247, 2310, 2609, 2691, 2963, 3060
GlaI GCGC 1 cut(s) 1722
GluI GCNGC 9 cut(s) 290, 978, 1459, 1951, 1959, 2377, 2442, 2445, 2929
GsaI CCCAGC 1 cut(s) 674
GsuI CTGGAG 1 cut(s) 2189
HaeIII GGCC 2 cut(s) 1050, 1097
HapII CCGG 5 cut(s) 566, 866, 1268, 1487, 2722
HgaI GACGC 4 cut(s) 325, 737, 2054, 2432
HhaI GCGC 1 cut(s) 1723
Hin1I GRCGYC 1 cut(s) 142
Hin6I GCGC 1 cut(s) 1721
HinP1I GCGC 1 cut(s) 1721
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 8 cut(s) 79, 1014, 1669, 2119, 2339, 2393, 2694, 3056
HpaII CCGG 5 cut(s) 566, 866, 1268, 1487, 2722
Hpy166II GTNNAC 9 cut(s) 272, 1153, 1398, 1571, 1607, 1760, 2225, 2969, 3066
Hpy8I GTNNAC 9 cut(s) 272, 1153, 1398, 1571, 1607, 1760, 2225, 2969, 3066
Hpy99I CGWCG 3 cut(s) 144, 147, 341
HpyAV CCTTC 8 cut(s) 224, 362, 1158, 1296, 1376, 1579, 1626, 2155
HpyCH4IV ACGT 6 cut(s) 142, 274, 463, 497, 1310, 2575
HpyF3I CTNAG 9 cut(s) 399, 471, 645, 771, 800, 1550, 1581, 2465, 2987
HpySE526I ACGT 6 cut(s) 142, 274, 463, 497, 1310, 2575
Hsp92I GRCGYC 1 cut(s) 142
HspAI GCGC 1 cut(s) 1721
Ksp22I TGATCA 1 cut(s) 2919
LmnI GCTCC 4 cut(s) 826, 1623, 1955, 2096
Lsp1109I GCAGC 4 cut(s) 1962, 1970, 2388, 2428
MaeI CTAG 8 cut(s) 1296, 1680, 2247, 2310, 2609, 2691, 2963, 3060
MaeII ACGT 6 cut(s) 142, 274, 463, 497, 1310, 2575
MaeIII GTNAC 9 cut(s) 121, 932, 1077, 1083, 1675, 1701, 1826, 2099, 2978
MbiI CCGCTC 2 cut(s) 980, 2928
MfeI CAATTG 1 cut(s) 746
MflI RGATCY 4 cut(s) 1985, 2530, 2913, 2938
MhlI GDGCHC 4 cut(s) 333, 378, 1641, 2754
MlsI TGGCCA 1 cut(s) 1097
MluNI TGGCCA 1 cut(s) 1097
MlyI GAGTC 3 cut(s) 88, 2402, 3065
MmeI TCCRAC 2 cut(s) 216, 2862
Mox20I TGGCCA 1 cut(s) 1097
Mph1103I ATGCAT 3 cut(s) 1104, 1116, 2490
MscI TGGCCA 1 cut(s) 1097
MslI CAYNNNNRTG 4 cut(s) 390, 1097, 1935, 2106
Msp20I TGGCCA 1 cut(s) 1097
MspA1I CMGCKG 1 cut(s) 1953
MspCI CTTAAG 2 cut(s) 1118, 2297
MspI CCGG 5 cut(s) 566, 866, 1268, 1487, 2722
MspR9I CCNGG 9 cut(s) 566, 1011, 1269, 1322, 1488, 1777, 1973, 2723, 3178
MunI CAATTG 1 cut(s) 746
Mva1269I GAATGC 2 cut(s) 1210, 2003
MvaI CCWGG 5 cut(s) 1011, 1322, 1777, 1973, 3178
NciI CCSGG 4 cut(s) 566, 1269, 1488, 2723
NcoI CCATGG 1 cut(s) 1092
NdeI CATATG 1 cut(s) 1146
NlaIV GGNNCC 3 cut(s) 2332, 2403, 3175
NmuCI GTSAC 4 cut(s) 932, 1077, 2099, 2978
NsiI ATGCAT 3 cut(s) 1104, 1116, 2490
NspI RCATGY 2 cut(s) 1106, 2223
OliI CACNNNNGTG 1 cut(s) 2106
PaeR7I CTCGAG 1 cut(s) 3050
PagI TCATGA 1 cut(s) 718
PctI GAATGC 2 cut(s) 1210, 2003
PfeI GAWTC 5 cut(s) 1014, 1669, 2119, 2339, 2694
PfoI TCCNGGA 1 cut(s) 1971
PkrI GCNGC 9 cut(s) 291, 979, 1460, 1952, 1960, 2378, 2443, 2446, 2930
PleI GAGTC 3 cut(s) 87, 2401, 3064
PpsI GAGTC 3 cut(s) 87, 2401, 3064
Ppu21I YACGTR 1 cut(s) 464
PpuMI RGGWCCY 1 cut(s) 3174
PshBI ATTAAT 1 cut(s) 2733
Psp1406I AACGTT 1 cut(s) 2575
Psp5II RGGWCCY 1 cut(s) 3174
Psp6I CCWGG 5 cut(s) 1009, 1320, 1775, 1971, 3176
PspEI GGTNACC 1 cut(s) 1077
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 5 cut(s) 1009, 1320, 1775, 1971, 3176
PspN4I GGNNCC 3 cut(s) 2332, 2403, 3175
PspPI GGNCC 5 cut(s) 1049, 1134, 2779, 3063, 3174
PspPPI RGGWCCY 1 cut(s) 3174
PspXI VCTCGAGB 1 cut(s) 3050
PstI CTGCAG 2 cut(s) 1952, 2791
PsuI RGATCY 4 cut(s) 1985, 2530, 2913, 2938
RsaI GTAC 3 cut(s) 2604, 2689, 3030
RsaNI GTAC 3 cut(s) 2603, 2688, 3029
RseI CAYNNNNRTG 4 cut(s) 390, 1097, 1935, 2106
SatI GCNGC 9 cut(s) 290, 978, 1459, 1951, 1959, 2377, 2442, 2445, 2929
Sau96I GGNCC 5 cut(s) 1049, 1134, 2779, 3063, 3174
SchI GAGTC 3 cut(s) 88, 2402, 3065
ScrFI CCNGG 9 cut(s) 566, 1011, 1269, 1322, 1488, 1777, 1973, 2723, 3178
SduI GDGCHC 4 cut(s) 333, 378, 1641, 2754
SfcI CTRYAG 3 cut(s) 489, 1948, 2787
Sfr274I CTCGAG 1 cut(s) 3050
SinI GGWCC 4 cut(s) 1134, 2779, 3063, 3174
SlaI CTCGAG 1 cut(s) 3050
SmiMI CAYNNNNRTG 4 cut(s) 390, 1097, 1935, 2106
SmlI CTYRAG 6 cut(s) 1118, 1412, 1536, 1744, 2297, 3050
SmoI CTYRAG 6 cut(s) 1118, 1412, 1536, 1744, 2297, 3050
SnaBI TACGTA 1 cut(s) 464
SpeI ACTAGT 1 cut(s) 1679
SsiI CCGC 9 cut(s) 290, 776, 804, 978, 1459, 1953, 2142, 2444, 2928
SspI AATATT 3 cut(s) 1768, 1966, 2901
SspMI CTAG 8 cut(s) 1296, 1680, 2247, 2310, 2609, 2691, 2963, 3060
StyD4I CCNGG 9 cut(s) 564, 1009, 1267, 1320, 1486, 1775, 1971, 2721, 3176
StyI CCWWGG 4 cut(s) 1092, 1805, 2259, 2397
TaiI ACGT 6 cut(s) 145, 277, 466, 500, 1313, 2578
TaqI TCGA 8 cut(s) 339, 1029, 1064, 1518, 1672, 2499, 2742, 3051
TatI WGTACW 1 cut(s) 3028
TauI GCSGC 5 cut(s) 292, 980, 1461, 2447, 2931
TfiI GAWTC 5 cut(s) 1014, 1669, 2119, 2339, 2694
TscAI CASTG 6 cut(s) 253, 358, 2462, 2473, 2593, 2981
TseFI GTSAC 4 cut(s) 932, 1077, 2099, 2978
TseI GCWGC 4 cut(s) 1950, 1958, 2376, 2441
Tsp45I GTSAC 4 cut(s) 932, 1077, 2099, 2978
TspGWI ACGGA 3 cut(s) 257, 1496, 2083
TspRI CASTG 6 cut(s) 253, 358, 2462, 2473, 2593, 2981
Vha464I CTTAAG 2 cut(s) 1118, 2297
VpaK11BI GGWCC 4 cut(s) 1134, 2779, 3063, 3174
VspI ATTAAT 1 cut(s) 2733
XapI RAATTY 5 cut(s) 621, 954, 2567, 2649, 2870
XbaI TCTAGA 1 cut(s) 2608
XceI RCATGY 2 cut(s) 1106, 2223
XcmI CCANNNNNNNNNTGG 3 cut(s) 1144, 1969, 2187
XhoI CTCGAG 1 cut(s) 3050
XmiI GTMKAC 2 cut(s) 1152, 1397
XspI CTAG 8 cut(s) 1296, 1680, 2247, 2310, 2609, 2691, 2963, 3060
ZraI GACGTC 1 cut(s) 143
Zsp2I ATGCAT 3 cut(s) 1104, 1116, 2490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.