RLG00000015080

ubiquitinyl hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001222
Physical Location & Seq
Forward (+)
61465948 .. 61471422
5475 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015080

Sequence Viewer

Length: 999 bp
ATGGAAAGGAGCTCAGCGTTGCGGATTCTTTTGTATCCAAAGGGAAGGGAATCTGTAGACGACTTGTTGGTGTCTTTTGATGTTGAAGGTGGCTCAGAATTGCCACTTGGGTGGTCTAGATATGCACAACTCAGCATGACCATGGTTAATCAACTTCAGCGCAGCAAGTCTATAACCAAAGTCTGCAAGGCGAGAATTCAGATTTCACATGCCCAGAAAACTGGCCTGGAGTCTGTGGAAGTTCCAAATCCTTCTTCAGCAGCACGCAGGGCATCTTGCTTCAAAAATGTGACTGCTGTCCGTGATGCAACAACTTCTGAACACGTTTACATCGAGCTGTCTGATGCCAGTTCTGAGCCTATGGAAGTTCCAGATCTTTCTTCAGCTACATGGAAGGCAACTAGCTTTCAACATATGACTGCCTCCCAGGACACAGCAAGTTCTGCAGAAGTTATCAAGTTTTCTGATCCCAGTACTGACCATTCCCTCGATGAGGAATTTGATGTTGTGTCCTCCACATCACCTTCTGATCTCTTGAACTTCAGGGGCTTGGCGGATATAAAGAAAGATTTTGTTCCCCTACTCGAGGAAGTTTGTTTATGGCATCCTTCTCTTATTGAATGCCAAAGGGAGAGTAGTCCCCAGTTCACTGAATGGGCATTTACTGCCTTGGGGAAAGTTCTGCATTTTTTGAAGACCAAAAAGGTTAAGGATATGACAACATATGTTTGTAAAGACCTACAAATTTTATGGAATGAGCTGAAGGCCTTCAGATTTGACCTGACATGGCTAAAGCCTCATGTTGAAAGAGCTCTCGGTCTGAGTAAGTTTGTGGAAAGCACAAAGGAGCTAAAAAGAGTAGCAGAGAATGTAAAGGCTTTGGAGATTGAATCAAAGAGGCTAAAGGCTAAGCTTGTGGCAGCGAGAAGTGATCTGGAGAAGGCTGGACAAGGCTTCGAAGAGATTATGGATAGTGAGTTAGGCTATCATACTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

333

Amino Acids

37.26

Weight (kDa)

5.84

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 57
AciI CCGC 2 cut(s) 22, 554
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 3 cut(s) 195, 497, 744
AcuI CTGAAG 6 cut(s) 140, 240, 366, 526, 754, 782
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 2 cut(s) 493, 586
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 8 cut(s) 86, 283, 410, 538, 620, 694, 806, 890
AjnI CCWGG 2 cut(s) 225, 426
AjuI GAANNNNNNNTTGG 4 cut(s) 90, 122, 238, 270
AleI CACNNNNGTG 1 cut(s) 109
AluBI AGCT 8 cut(s) 12, 337, 386, 405, 760, 812, 850, 913
AluI AGCT 8 cut(s) 12, 337, 386, 405, 760, 812, 850, 913
Alw21I GWGCWC 2 cut(s) 14, 814
AlwI GGATC 1 cut(s) 461
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 2 cut(s) 223, 765
ApeKI GCWGC 3 cut(s) 162, 260, 920
ApoI RAATTY 3 cut(s) 195, 497, 744
Asp700I GAANNNNTTC 1 cut(s) 767
AspLEI GCGC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 513
AsuII TTCGAA 1 cut(s) 957
AvaI CYCGRG 1 cut(s) 584
BanII GRGCYC 2 cut(s) 14, 814
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 2 cut(s) 14, 814
BbvI GCAGC 3 cut(s) 174, 272, 932
BciT130I CCWGG 2 cut(s) 227, 428
BciVI GTATCC 1 cut(s) 45
BfaI CTAG 2 cut(s) 117, 402
BfmI CTRYAG 2 cut(s) 54, 444
BfuI GTATCC 1 cut(s) 45
BglII AGATCT 1 cut(s) 373
BisI GCNGC 3 cut(s) 163, 261, 921
BlpI GCTNAGC 2 cut(s) 13, 909
BlsI GCNGC 3 cut(s) 164, 262, 922
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 2 cut(s) 227, 428
BmeT110I CYCGRG 1 cut(s) 584
BmrFI CCNGG 2 cut(s) 227, 428
BmrI ACTGGG 2 cut(s) 465, 637
BmsI GCATC 4 cut(s) 281, 295, 334, 613
BmuI ACTGGG 2 cut(s) 465, 637
BoxI GACNNNNGTC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 701
BpmI CTGGAG 2 cut(s) 248, 956
Bpu1102I GCTNAGC 2 cut(s) 13, 909
Bpu14I TTCGAA 1 cut(s) 957
BsaJI CCNNGG 3 cut(s) 141, 426, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 493, 586
Bse1I ACTGG 4 cut(s) 226, 348, 471, 643
BseBI CCWGG 2 cut(s) 227, 428
BseDI CCNNGG 3 cut(s) 141, 426, 669
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 2 cut(s) 493, 586
BseMII CTCAG 5 cut(s) 27, 108, 145, 345, 812
BseNI ACTGG 4 cut(s) 226, 348, 471, 643
BseXI GCAGC 3 cut(s) 174, 272, 932
BshFI GGCC 2 cut(s) 225, 767
BsiHKAI GWGCWC 2 cut(s) 14, 814
BsiHKCI CYCGRG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 2 cut(s) 493, 586
BsmFI GGGAC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 2 cut(s) 225, 767
BsoBI CYCGRG 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 957
Bsp1286I GDGCHC 2 cut(s) 14, 814
Bsp143I GATC 4 cut(s) 373, 466, 529, 931
Bsp1720I GCTNAGC 2 cut(s) 13, 909
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 2 cut(s) 22, 554
BspANI GGCC 2 cut(s) 225, 767
BspCNI CTCAG 5 cut(s) 26, 107, 144, 346, 813
BspMAI CTGCAG 1 cut(s) 448
BspPI GGATC 1 cut(s) 461
BspT104I TTCGAA 1 cut(s) 957
BsrI ACTGG 4 cut(s) 226, 348, 471, 643
BssECI CCNNGG 3 cut(s) 141, 426, 669
BssMI GATC 4 cut(s) 373, 466, 529, 931
BssT1I CCWWGG 2 cut(s) 141, 669
Bst2UI CCWGG 2 cut(s) 227, 428
Bst6I CTCTTC 1 cut(s) 954
BstAPI GCANNNNNTGC 2 cut(s) 443, 665
BstBI TTCGAA 1 cut(s) 957
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 6 cut(s) 13, 94, 131, 354, 821, 909
BstDSI CCRYGG 1 cut(s) 141
BstENI CCTNNNNNAGG 2 cut(s) 491, 584
BstF5I GGATG 1 cut(s) 604
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 376, 469, 532, 934
BstMBI GATC 4 cut(s) 373, 466, 529, 931
BstMWI GCNNNNNNNGC 3 cut(s) 269, 443, 665
BstNI CCWGG 2 cut(s) 227, 428
BstNSI RCATGY 1 cut(s) 212
BstPAI GACNNNNGTC 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 225, 426
BstSFI CTRYAG 2 cut(s) 54, 444
BstV1I GCAGC 3 cut(s) 174, 272, 932
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 1 cut(s) 373
BstXI CCANNNNNNTGG 2 cut(s) 111, 221
BstYI RGATCY 1 cut(s) 373
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 2 cut(s) 225, 767
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 474
CviAII CATG 6 cut(s) 136, 142, 209, 390, 786, 800
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 6 cut(s) 13, 94, 131, 354, 821, 909
DpnI GATC 4 cut(s) 375, 468, 531, 933
DpnII GATC 4 cut(s) 373, 466, 529, 931
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
EciI GGCGGA 1 cut(s) 569
Ecl136II GAGCTC 2 cut(s) 12, 812
Eco130I CCWWGG 2 cut(s) 141, 669
Eco147I AGGCCT 1 cut(s) 767
Eco24I GRGCYC 2 cut(s) 14, 814
Eco53kI GAGCTC 2 cut(s) 12, 812
Eco57I CTGAAG 6 cut(s) 140, 240, 366, 526, 754, 782
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 2 cut(s) 12, 812
EcoNI CCTNNNNNAGG 2 cut(s) 491, 584
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 225, 426
EcoT14I CCWWGG 2 cut(s) 141, 669
EcoT38I GRGCYC 2 cut(s) 14, 814
ErhI CCWWGG 2 cut(s) 141, 669
FaeI CATG 6 cut(s) 139, 145, 212, 393, 789, 803
FaqI GGGAC 1 cut(s) 624
FatI CATG 6 cut(s) 135, 141, 208, 389, 785, 799
FauNDI CATATG 2 cut(s) 414, 724
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 163, 261, 921
FokI GGATG 1 cut(s) 591
FriOI GRGCYC 2 cut(s) 14, 814
Fsp4HI GCNGC 3 cut(s) 163, 261, 921
FspBI CTAG 2 cut(s) 117, 402
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 163, 261, 921
GsuI CTGGAG 2 cut(s) 248, 956
HaeIII GGCC 2 cut(s) 225, 767
HhaI GCGC 1 cut(s) 162
Hin1II CATG 6 cut(s) 139, 145, 212, 393, 789, 803
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 4 cut(s) 25, 50, 230, 890
HphI GGTGA 1 cut(s) 513
Hpy166II GTNNAC 3 cut(s) 58, 328, 648
Hpy188I TCNGA 9 cut(s) 97, 201, 319, 343, 355, 466, 529, 773, 822
Hpy188III TCNNGA 4 cut(s) 117, 371, 535, 935
Hpy8I GTNNAC 3 cut(s) 58, 328, 648
HpyAV CCTTC 9 cut(s) 39, 80, 261, 388, 534, 618, 757, 778, 934
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 5 cut(s) 125, 186, 308, 446, 685
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 443, 665
HpyF3I CTNAG 6 cut(s) 13, 94, 131, 354, 821, 909
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 6 cut(s) 139, 145, 212, 393, 789, 803
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 373, 466, 529, 931
LmnI GCTCC 2 cut(s) 9, 847
Lsp1109I GCAGC 3 cut(s) 174, 272, 932
LweI GCATC 4 cut(s) 281, 295, 334, 613
MaeI CTAG 2 cut(s) 117, 402
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 289
MalI GATC 4 cut(s) 375, 468, 531, 933
MboI GATC 4 cut(s) 373, 466, 529, 931
MboII GAAGA 4 cut(s) 246, 372, 706, 971
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 2 cut(s) 14, 814
MluCI AATT 4 cut(s) 98, 195, 497, 744
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 7 cut(s) 433, 487, 497, 523, 580, 807, 891
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 3 cut(s) 147, 708, 997
MslI CAYNNNNRTG 2 cut(s) 109, 140
MspR9I CCNGG 2 cut(s) 227, 428
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 2 cut(s) 227, 428
MwoI GCNNNNNNNGC 3 cut(s) 269, 443, 665
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 2 cut(s) 414, 724
NdeII GATC 4 cut(s) 373, 466, 529, 931
NlaIII CATG 6 cut(s) 139, 145, 212, 393, 789, 803
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 212
NspV TTCGAA 1 cut(s) 957
OliI CACNNNNGTG 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 584
PceI AGGCCT 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 3 cut(s) 25, 50, 890
PkrI GCNGC 3 cut(s) 164, 262, 922
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PshAI GACNNNNGTC 1 cut(s) 296
Psp124BI GAGCTC 2 cut(s) 14, 814
Psp6I CCWGG 2 cut(s) 225, 426
PspGI CCWGG 2 cut(s) 225, 426
PspXI VCTCGAGB 1 cut(s) 584
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 2 cut(s) 109, 140
SacI GAGCTC 2 cut(s) 14, 814
SaqAI TTAA 3 cut(s) 147, 708, 997
SatI GCNGC 3 cut(s) 163, 261, 921
Sau3AI GATC 4 cut(s) 373, 466, 529, 931
ScaI AGTACT 1 cut(s) 475
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 227, 428
SduI GDGCHC 2 cut(s) 14, 814
SfaNI GCATC 4 cut(s) 281, 295, 334, 613
SfcI CTRYAG 2 cut(s) 54, 444
Sfr274I CTCGAG 1 cut(s) 584
SfuI TTCGAA 1 cut(s) 957
SlaI CTCGAG 1 cut(s) 584
SmiMI CAYNNNNRTG 2 cut(s) 109, 140
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 4 cut(s) 98, 195, 497, 744
SseBI AGGCCT 1 cut(s) 767
SsiI CCGC 2 cut(s) 22, 554
SspMI CTAG 2 cut(s) 117, 402
SstI GAGCTC 2 cut(s) 14, 814
StuI AGGCCT 1 cut(s) 767
StyD4I CCNGG 2 cut(s) 225, 426
StyI CCWWGG 2 cut(s) 141, 669
TaiI ACGT 1 cut(s) 327
TaqI TCGA 4 cut(s) 333, 489, 585, 957
TaqII GACCGA 1 cut(s) 806
TasI AATT 4 cut(s) 98, 195, 497, 744
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 3 cut(s) 25, 50, 890
Tru1I TTAA 3 cut(s) 147, 708, 997
Tru9I TTAA 3 cut(s) 147, 708, 997
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 162, 260, 920
Tsp45I GTSAC 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 655
XagI CCTNNNNNAGG 2 cut(s) 491, 584
XapI RAATTY 3 cut(s) 195, 497, 744
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 2 cut(s) 117, 402
ZrmI AGTACT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.