Rmu_sc0024918.1_g000001

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024918.1
OG0001222
Physical Location & Seq
Forward (+)
1 .. 2268
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024918.1_g000001.1.cds

Sequence Viewer

Length: 953 bp
atcacactgggtgcctgagaaaaggaggtgtggatatgtcggaaagtgattcaaaaggaaattggttttgcagcaagaattgtaaaaagatatctttgggcctccacaagcttttagggaaacaatttccggcgggtgttggcaatttaacttggtcacttctgaagtccatgaaatctgatagtgatgatgctactgaacctgacaatgatgccataacggagagttttagcaggcttagtattgcccttgatgtgatgcacgagtgttttgagcctgttaaggaacctcttaccaggagagatcttgcagaagatatcatcttcagtagagggtcaaatctcaatcgcttgaactttcaagggttctataccatgctattggaaagaaatgatgagctaatcactgtggctactgtaaggatctatggaaagaaggtggccgaagtacctcttgttgctaccagatttcaatatcgtcgacttggaatgtgtcgtgtgttgatgaatttacttgaaaagatgcttatggatttaggtgtggagagattggttttgcctgctgtccccagtgtgctaaacacatggactactgcatttgggttttcaagaatgacagagtctgagaggctacagtttctggatcatactttcctggattttcaggataccattatgtgtcagaaacttttaatgaagatctctccagctgaaccaagcctgttgaaaggaacacagcctaatatttctggaagtggtgataatattgatcttgatgggtccagttctgtctctgaagtgtgtcaactggaacaaacagaggatagccaaaccgtattccagggacttgaaagtgctgcagggaaaagaagagcatgcgttgataagaactgtccagagttcaagcagtacaagcgaatgaggaaatcaaatttggctgccatagttatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

316

Amino Acids

35.43

Weight (kDa)

7.05

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 480
AciI CCGC 1 cut(s) 133
AclWI GGATC 2 cut(s) 430, 650
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 2 cut(s) 507, 930
AcuI CTGAAG 3 cut(s) 184, 309, 815
AdeI CACNNNGTG 1 cut(s) 11
AfaI GTAC 2 cut(s) 449, 910
AgsI TTSAA 9 cut(s) 53, 354, 361, 472, 517, 608, 726, 850, 903
AjnI CCWGG 3 cut(s) 295, 653, 839
AjuI GAANNNNNNNTTGG 2 cut(s) 916, 948
AluBI AGCT 3 cut(s) 111, 399, 709
AluI AGCT 3 cut(s) 111, 399, 709
Alw26I GTCTC 1 cut(s) 795
AlwI GGATC 2 cut(s) 430, 650
AlwNI CAGNNNCTG 2 cut(s) 622, 639
AoxI GGCC 2 cut(s) 99, 440
ApeKI GCWGC 3 cut(s) 71, 856, 937
ApoI RAATTY 2 cut(s) 507, 930
AspS9I GGNCC 2 cut(s) 99, 779
AsuHPI GGTGA 1 cut(s) 769
AvaII GGWCC 1 cut(s) 779
BanI GGYRCC 1 cut(s) 11
BauI CACGAG 1 cut(s) 262
BbvI GCAGC 3 cut(s) 83, 843, 924
BccI CCATC 1 cut(s) 769
BciT130I CCWGG 3 cut(s) 297, 655, 841
BciVI GTATCC 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 795
BfmI CTRYAG 2 cut(s) 631, 857
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 2 cut(s) 303, 698
BisI GCNGC 3 cut(s) 72, 857, 938
BlsI GCNGC 3 cut(s) 73, 858, 939
Bme1390I CCNGG 3 cut(s) 297, 655, 841
Bme18I GGWCC 1 cut(s) 779
BmgT120I GGNCC 2 cut(s) 99, 779
BmiI GGNNCC 3 cut(s) 13, 287, 780
BmrFI CCNGG 3 cut(s) 297, 655, 841
BmrI ACTGGG 2 cut(s) 17, 563
BmsI GCATC 4 cut(s) 180, 201, 248, 512
BmuI ACTGGG 2 cut(s) 17, 563
BpmI CTGGAG 1 cut(s) 689
BsaJI CCNNGG 1 cut(s) 840
Bse1I ACTGG 4 cut(s) 12, 569, 782, 812
BseBI CCWGG 3 cut(s) 297, 655, 841
BseDI CCNNGG 1 cut(s) 840
BseMII CTCAG 2 cut(s) 7, 614
BseNI ACTGG 4 cut(s) 12, 569, 782, 812
BseXI GCAGC 3 cut(s) 83, 843, 924
BshFI GGCC 2 cut(s) 101, 442
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 2 cut(s) 550, 857
BsmAI GTCTC 1 cut(s) 795
BsmFI GGGAC 2 cut(s) 550, 857
BsnI GGCC 2 cut(s) 101, 442
Bsp143I GATC 5 cut(s) 303, 422, 642, 698, 768
BspACI CCGC 1 cut(s) 133
BspANI GGCC 2 cut(s) 101, 442
BspCNI CTCAG 2 cut(s) 8, 615
BspLI GGNNCC 3 cut(s) 13, 287, 780
BspMAI CTGCAG 1 cut(s) 861
BspPI GGATC 2 cut(s) 430, 650
BspQI GCTCTTC 1 cut(s) 864
BspT107I GGYRCC 1 cut(s) 11
BsrI ACTGG 4 cut(s) 12, 569, 782, 812
BssECI CCNNGG 1 cut(s) 840
BssMI GATC 5 cut(s) 303, 422, 642, 698, 768
BssSI CACGAG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 3 cut(s) 297, 655, 841
Bst4CI ACNGT 5 cut(s) 408, 417, 635, 834, 892
Bst6I CTCTTC 1 cut(s) 864
BstC8I GCNNGC 3 cut(s) 235, 560, 876
BstDEI CTNAG 3 cut(s) 16, 238, 623
BstKTI GATC 5 cut(s) 306, 425, 645, 701, 771
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 5 cut(s) 303, 422, 642, 698, 768
BstMWI GCNNNNNNNGC 1 cut(s) 912
BstNI CCWGG 3 cut(s) 297, 655, 841
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 3 cut(s) 295, 653, 839
BstSFI CTRYAG 2 cut(s) 631, 857
BstV1I GCAGC 3 cut(s) 83, 843, 924
BstX2I RGATCY 3 cut(s) 303, 422, 698
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 3 cut(s) 303, 422, 698
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 101, 442
BtsIMutI CAGTG 3 cut(s) 5, 404, 576
Cac8I GCNNGC 3 cut(s) 235, 560, 876
CaiI CAGNNNCTG 2 cut(s) 622, 639
Cfr13I GGNCC 2 cut(s) 99, 779
Csp6I GTAC 2 cut(s) 448, 909
CviAII CATG 4 cut(s) 171, 375, 584, 875
CviQI GTAC 2 cut(s) 448, 909
DdeI CTNAG 3 cut(s) 16, 238, 623
DpnI GATC 5 cut(s) 305, 424, 644, 700, 770
DpnII GATC 5 cut(s) 303, 422, 642, 698, 768
DraIII CACNNNGTG 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco32I GATATC 2 cut(s) 92, 318
Eco47I GGWCC 1 cut(s) 779
Eco57I CTGAAG 3 cut(s) 184, 309, 815
EcoRII CCWGG 3 cut(s) 295, 653, 839
EcoRV GATATC 2 cut(s) 92, 318
FaeI CATG 4 cut(s) 174, 378, 587, 878
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 2 cut(s) 550, 857
FatI CATG 4 cut(s) 170, 374, 583, 874
FauI CCCGC 1 cut(s) 126
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 3 cut(s) 72, 857, 938
Fsp4HI GCNGC 3 cut(s) 72, 857, 938
GluI GCNGC 3 cut(s) 72, 857, 938
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 2 cut(s) 101, 442
HapII CCGG 1 cut(s) 130
Hin1II CATG 4 cut(s) 174, 378, 587, 878
HincII GTYRAC 2 cut(s) 481, 805
HindII GTYRAC 2 cut(s) 481, 805
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 2 cut(s) 49, 619
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 769
Hpy166II GTNNAC 2 cut(s) 481, 805
Hpy188I TCNGA 6 cut(s) 42, 164, 180, 624, 683, 795
Hpy188III TCNNGA 6 cut(s) 608, 640, 664, 749, 772, 895
Hpy8I GTNNAC 2 cut(s) 481, 805
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 429
HpyCH4III ACNGT 5 cut(s) 408, 417, 635, 834, 892
HpyCH4V TGCA 5 cut(s) 71, 261, 310, 595, 859
HpyF10VI GCNNNNNNNGC 1 cut(s) 912
HpyF3I CTNAG 3 cut(s) 16, 238, 623
Hsp92II CATG 4 cut(s) 174, 378, 587, 878
Kzo9I GATC 5 cut(s) 303, 422, 642, 698, 768
LguI GCTCTTC 1 cut(s) 864
Lsp1109I GCAGC 3 cut(s) 83, 843, 924
LweI GCATC 4 cut(s) 180, 201, 248, 512
MaeIII GTNAC 1 cut(s) 155
MalI GATC 5 cut(s) 305, 424, 644, 700, 770
MboI GATC 5 cut(s) 303, 422, 642, 698, 768
MboII GAAGA 4 cut(s) 315, 325, 708, 881
MflI RGATCY 3 cut(s) 303, 422, 698
MluCI AATT 6 cut(s) 60, 78, 124, 144, 507, 930
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 8 cut(s) 19, 112, 299, 325, 461, 620, 813, 914
MseI TTAA 3 cut(s) 148, 281, 691
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 3 cut(s) 297, 655, 841
MvaI CCWGG 3 cut(s) 297, 655, 841
MwoI GCNNNNNNNGC 1 cut(s) 912
NdeII GATC 5 cut(s) 303, 422, 642, 698, 768
NlaIII CATG 4 cut(s) 174, 378, 587, 878
NlaIV GGNNCC 3 cut(s) 13, 287, 780
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 878
PaeI GCATGC 1 cut(s) 878
PciSI GCTCTTC 1 cut(s) 864
PfeI GAWTC 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 618
PfoI TCCNGGA 1 cut(s) 653
PkrI GCNGC 3 cut(s) 73, 858, 939
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 295, 653, 839
PspGI CCWGG 3 cut(s) 295, 653, 839
PspN4I GGNNCC 3 cut(s) 13, 287, 780
PspPI GGNCC 2 cut(s) 99, 779
PstI CTGCAG 1 cut(s) 861
PstNI CAGNNNCTG 2 cut(s) 622, 639
PsuI RGATCY 3 cut(s) 303, 422, 698
PsyI GACNNNGTC 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 709
RsaI GTAC 2 cut(s) 449, 910
RsaNI GTAC 2 cut(s) 448, 909
SalI GTCGAC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 3 cut(s) 148, 281, 691
SatI GCNGC 3 cut(s) 72, 857, 938
Sau3AI GATC 5 cut(s) 303, 422, 642, 698, 768
Sau96I GGNCC 2 cut(s) 99, 779
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 3 cut(s) 297, 655, 841
SetI ASST 9 cut(s) 30, 113, 204, 291, 401, 440, 453, 540, 711
SfaNI GCATC 4 cut(s) 180, 201, 248, 512
SfcI CTRYAG 2 cut(s) 631, 857
SinI GGWCC 1 cut(s) 779
SphI GCATGC 1 cut(s) 878
Sse9I AATT 6 cut(s) 60, 78, 124, 144, 507, 930
SsiI CCGC 1 cut(s) 133
SspI AATATT 2 cut(s) 744, 765
StyD4I CCNGG 3 cut(s) 295, 653, 839
TaaI ACNGT 5 cut(s) 408, 417, 635, 834, 892
TaqI TCGA 1 cut(s) 480
TasI AATT 6 cut(s) 60, 78, 124, 144, 507, 930
TatI WGTACW 1 cut(s) 908
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 3 cut(s) 148, 281, 691
Tru9I TTAA 3 cut(s) 148, 281, 691
TscAI CASTG 3 cut(s) 12, 411, 576
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 3 cut(s) 71, 856, 937
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 187, 520, 709
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 3 cut(s) 12, 411, 576
Tth111I GACNNNGTC 1 cut(s) 618
VpaK11BI GGWCC 1 cut(s) 779
XapI RAATTY 2 cut(s) 507, 930
XceI RCATGY 1 cut(s) 878
XmiI GTMKAC 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.