Rorug05G0403800

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001222
Physical Location & Seq
Reverse (-)
55531491 .. 55531679
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0403800.1

Sequence Viewer

Length: 189 bp
ATGGCAACCCTTGAGGAAATCCTAACACGCCGCCCAGTCGCCACGGCGATCCACCTCCCTCGACCCGCCTCACCCGACATGCACCGCCGGTGTCCGGCTTTAGGTCAGTCCCGCCTCAACCTAATGGCCTTCTGCAAAGACTTCAATGCCCAACGCAGAAGCACAAACCCGATACTCCCATGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

62

Amino Acids

7.1

Weight (kDa)

11.19

Isoelectric Point (pI)

109.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 31, 66, 85, 112
AclWI GGATC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 94, 101
AgsI TTSAA 1 cut(s) 145
AlwI GGATC 1 cut(s) 43
AoxI GGCC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 63
BceAI ACGGC 1 cut(s) 60
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmrI ACTGGG 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 42, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 101
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 42, 179
BseLI CCNNNNNNNGG 2 cut(s) 94, 101
BseNI ACTGG 1 cut(s) 35
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 88, 95
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 94, 101
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 4 cut(s) 31, 66, 85, 112
BspANI GGCC 1 cut(s) 128
BspPI GGATC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 42, 179
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 179
BstDSI CCRYGG 2 cut(s) 42, 179
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 2 cut(s) 42, 179
Cfr10I RCCGGY 1 cut(s) 87
CviAII CATG 2 cut(s) 79, 180
CviJI RGCY 2 cut(s) 98, 128
CviKI_1 RGCY 2 cut(s) 98, 128
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 82, 183
FaiI YATR 2 cut(s) 80, 181
FaqI GGGAC 1 cut(s) 94
FatI CATG 2 cut(s) 78, 179
FauI CCCGC 2 cut(s) 73, 119
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 128
HapII CCGG 2 cut(s) 88, 95
Hin1II CATG 2 cut(s) 82, 183
HpaII CCGG 2 cut(s) 88, 95
HphI GGTGA 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 82, 135
Hsp92II CATG 2 cut(s) 82, 183
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 3 cut(s) 48, 101, 108
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MnlI CCTC 5 cut(s) 7, 65, 69, 79, 125
MslI CAYNNNNRTG 1 cut(s) 184
MspI CCGG 2 cut(s) 88, 95
NcoI CCATGG 1 cut(s) 179
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 82, 183
NspI RCATGY 1 cut(s) 82
PkrI GCNGC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 184
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 48
SetI ASST 3 cut(s) 57, 106, 123
SgrAI CRCCGGYG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SsiI CCGC 4 cut(s) 31, 66, 85, 112
StyI CCWWGG 1 cut(s) 179
TaqI TCGA 1 cut(s) 61
TauI GCSGC 1 cut(s) 33
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.