Rmu_sc0002349.1_g000001

ubiquitinyl hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002349.1
OG0001222
Physical Location & Seq
Reverse (-)
2372 .. 5278
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002349.1_g000001.1.cds

Sequence Viewer

Length: 1830 bp
atgactgcttcaaactttcagatatacttaggcctccacgagtatttagggaaacaatttccagcgggtattgacagtctaacctggtcactattgaagtctgacagtaaagatactaatgaacctaataatgatgccatcacggacacttacagcaggctcaatctagccgttattgtaatgcacgagtgctttaagcctgttaagaaacctcatactggtacagatcttgcagaagatatcatattcagtagagggtcggatcgtaatcgcatgaactgtcaagggttttatacaatgcttctggagaaaaatgatgaaataataactgtagctactgtaaggatctatggagcacaggtggcagaaataccacttattggtaccaaattccaatatcgtcgaggtggaatgtgtcgtttattaatgcatctgcttgaaaagatgctaatgaatttaggtgtggagagactggtcttgcccactgtcccccatttactagacaattggtcatcatttggattttcaaagatgacggattctcagaggctacaggttctagattatagattcatggagtttcagaataccattatatgtcagaaaagtttaatgaagatccctctagctgaaccctgcccattggaaggaactccactttttatctctggaagtgttgttaatatggattctaatgggtcaagtggtgataatgtctcaatcacatggaaaattgacaatttctctactttgctgtgtatcaagaagtactctaacactttcctcactggtcaattgagatggcggcttcttttgtatccaaagggaagggaatctgtagacgacttgtcggtgtcttttgatgttgaaggtggctcagaattgccacttgggtggtctagatatgcccaactcagcatgaccatggttaatcaacttcagtgcagcaagtcaataaccaaagaaagtaaacatgttttcaataaaggggggagtgactgtggcttcacatccttaattccactaaatgagttacatgaccctagtaaagggtatcttgtgaatgatacatgtatcatcgaagccaatattacagtctgcaaggctagaattcagatttcacatgcccagaaaactggccaggagtctgtggatgttccaaatccttcttcagcagcacgcagggcatcttgcttcaaaaatgtgactgctgtccatgatgcaacaacttctcaacacgtttacatcgagctgtctgatgccagttctgagcctatggaagttccagatctttcttcagctacacggaaggcaactagctttcaacatatgactgcctcccaggacacagcaagttctgcagaagttatcaagttcctttctgatatcagtactgaccattccctcgatgaggaatttgatgttgtgtcctccacatcaccttctgatctcttgaacttcaggggcttggcggatataaagaaagattttgttcccctactcgaggaagtttgtttatggcatccttctcttattgaatgccaaaggaagagtagtccccagttcactgaatgggcatttactgccttgggaaaagtcctgcattttttgaagaccaagaaggttaaggatatgacaacatatgtttgtaaagacctacaaattttatggtatgagctgaaggccttcggatttgacctgacatggctaaagcctcaggttgaaagagctctcggtatgagtaagtttgtggaaagcacaacggagctaaaaagagcagccgagaatgtaaaggctttggagattgaatcaaagattatatgcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

609

Amino Acids

68.37

Weight (kDa)

6.01

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 380
AccI GTMKAC 1 cut(s) 840
AciI CCGC 3 cut(s) 65, 805, 1472
AclWI GGATC 3 cut(s) 270, 353, 613
AcoI YGGCCR 1 cut(s) 1138
AcsI RAATTY 5 cut(s) 389, 454, 1110, 1415, 1662
AcuI CTGAAG 5 cut(s) 923, 1155, 1281, 1444, 1700
AfaI GTAC 4 cut(s) 223, 385, 770, 1393
AfiI CCNNNNNNNGG 6 cut(s) 218, 380, 647, 1049, 1411, 1504
AflIII ACRYGT 3 cut(s) 973, 1070, 1237
AhdI GACNNNNNGTC 2 cut(s) 508, 847
AjnI CCWGG 3 cut(s) 83, 1140, 1341
AjuI GAANNNNNNNTTGG 4 cut(s) 873, 905, 1153, 1185
AleI CACNNNNGTG 1 cut(s) 892
AluBI AGCT 8 cut(s) 335, 629, 1252, 1301, 1320, 1678, 1730, 1768
AluI AGCT 8 cut(s) 335, 629, 1252, 1301, 1320, 1678, 1730, 1768
Alw21I GWGCWC 2 cut(s) 358, 1732
Alw26I GTCTC 2 cut(s) 463, 721
AlwI GGATC 3 cut(s) 270, 353, 613
Ama87I CYCGRG 1 cut(s) 1502
AoxI GGCC 3 cut(s) 31, 1138, 1683
ApeKI GCWGC 3 cut(s) 945, 1175, 1778
ApoI RAATTY 5 cut(s) 389, 454, 1110, 1415, 1662
AseI ATTAAT 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 1685
Asp718I GGTACC 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 719, 1431
AvaI CYCGRG 1 cut(s) 1502
AxyI CCTNAGG 1 cut(s) 1716
BalI TGGCCA 1 cut(s) 1140
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 1732
BauI CACGAG 2 cut(s) 38, 185
BbsI GAAGAC 1 cut(s) 1619
Bbv12I GWGCWC 2 cut(s) 358, 1732
BbvI GCAGC 3 cut(s) 957, 1187, 1790
BccI CCATC 2 cut(s) 146, 795
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 3 cut(s) 85, 1142, 1343
BciVI GTATCC 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 463, 721
BfaI CTAG 8 cut(s) 167, 500, 560, 626, 900, 1044, 1107, 1317
BfmI CTRYAG 4 cut(s) 330, 551, 837, 1359
BfuI GTATCC 1 cut(s) 828
BglII AGATCT 2 cut(s) 226, 1288
BisI GCNGC 4 cut(s) 806, 946, 1176, 1779
BlsI GCNGC 4 cut(s) 807, 947, 1177, 1780
BmcAI AGTACT 2 cut(s) 770, 1393
Bme1390I CCNGG 3 cut(s) 85, 1142, 1343
BmeRI GACNNNNNGTC 2 cut(s) 508, 847
BmeT110I CYCGRG 1 cut(s) 1502
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 3 cut(s) 85, 1142, 1343
BmrI ACTGGG 1 cut(s) 1555
BmsI GCATC 7 cut(s) 124, 435, 439, 1196, 1210, 1249, 1531
BmuI ACTGGG 1 cut(s) 1555
BoxI GACNNNNGTC 1 cut(s) 1211
BpiI GAAGAC 1 cut(s) 1619
BpmI CTGGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 924, 1341, 1587
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 985, 1015
Bsc4I CCNNNNNNNGG 6 cut(s) 218, 380, 647, 1049, 1411, 1504
Bse1I ACTGG 6 cut(s) 223, 477, 793, 1141, 1263, 1561
Bse21I CCTNAGG 1 cut(s) 1716
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 3 cut(s) 85, 1142, 1343
BseDI CCNNGG 3 cut(s) 924, 1341, 1587
BseGI GGATG 3 cut(s) 1010, 1159, 1522
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 6 cut(s) 218, 380, 647, 1049, 1411, 1504
BseMII CTCAG 5 cut(s) 557, 891, 928, 1260, 1730
BseNI ACTGG 6 cut(s) 223, 477, 793, 1141, 1263, 1561
BseXI GCAGC 3 cut(s) 957, 1187, 1790
BsgI GTGCAG 1 cut(s) 964
BshFI GGCC 3 cut(s) 33, 1140, 1685
BshNI GGYRCC 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 358, 1732
BsiHKCI CYCGRG 1 cut(s) 1502
BslFI GGGAC 2 cut(s) 473, 1542
BslI CCNNNNNNNGG 6 cut(s) 218, 380, 647, 1049, 1411, 1504
BsmAI GTCTC 2 cut(s) 463, 721
BsmFI GGGAC 2 cut(s) 473, 1542
BsmI GAATGC 1 cut(s) 1544
BsnI GGCC 3 cut(s) 33, 1140, 1685
BsoBI CYCGRG 1 cut(s) 1502
Bsp1286I GDGCHC 2 cut(s) 358, 1732
Bsp143I GATC 6 cut(s) 226, 262, 345, 618, 1288, 1447
Bsp19I CCATGG 1 cut(s) 924
BspACI CCGC 3 cut(s) 65, 805, 1472
BspANI GGCC 3 cut(s) 33, 1140, 1685
BspCNI CTCAG 5 cut(s) 556, 890, 927, 1261, 1729
BspLI GGNNCC 1 cut(s) 385
BspMAI CTGCAG 1 cut(s) 1363
BspPI GGATC 3 cut(s) 270, 353, 613
BspT107I GGYRCC 1 cut(s) 383
BsrI ACTGG 6 cut(s) 223, 477, 793, 1141, 1263, 1561
BssECI CCNNGG 3 cut(s) 924, 1341, 1587
BssMI GATC 6 cut(s) 226, 262, 345, 618, 1288, 1447
BssSI CACGAG 2 cut(s) 38, 185
BssT1I CCWWGG 2 cut(s) 924, 1587
Bst2BI CACGAG 2 cut(s) 38, 185
Bst2UI CCWGG 3 cut(s) 85, 1142, 1343
Bst4CI ACNGT 8 cut(s) 77, 107, 281, 331, 340, 487, 1001, 1096
Bst6I CTCTTC 1 cut(s) 1544
BstAPI GCANNNNNTGC 2 cut(s) 1358, 1583
BstC8I GCNNGC 2 cut(s) 158, 1180
BstDEI CTNAG 6 cut(s) 28, 543, 877, 914, 1269, 1716
BstDSI CCRYGG 1 cut(s) 924
BstENI CCTNNNNNAGG 3 cut(s) 1047, 1409, 1502
BstF5I GGATG 3 cut(s) 1010, 1159, 1522
BstKTI GATC 6 cut(s) 229, 265, 348, 621, 1291, 1450
BstMAI GTCTC 2 cut(s) 463, 721
BstMBI GATC 6 cut(s) 226, 262, 345, 618, 1288, 1447
BstMWI GCNNNNNNNGC 4 cut(s) 362, 1184, 1358, 1583
BstNI CCWGG 3 cut(s) 85, 1142, 1343
BstNSI RCATGY 3 cut(s) 977, 1074, 1127
BstPAI GACNNNNGTC 1 cut(s) 1211
BstSCI CCNGG 3 cut(s) 83, 1140, 1341
BstSFI CTRYAG 4 cut(s) 330, 551, 837, 1359
BstV1I GCAGC 3 cut(s) 957, 1187, 1790
BstV2I GAAGAC 1 cut(s) 1619
BstX2I RGATCY 4 cut(s) 226, 345, 618, 1288
BstXI CCANNNNNNTGG 2 cut(s) 894, 1136
BstYI RGATCY 4 cut(s) 226, 345, 618, 1288
Bsu36I CCTNAGG 1 cut(s) 1716
BsuI GTATCC 1 cut(s) 828
BsuRI GGCC 3 cut(s) 33, 1140, 1685
BtgI CCRYGG 1 cut(s) 924
BtsCI GGATG 3 cut(s) 1010, 1159, 1522
BtsIMutI CAGTG 4 cut(s) 483, 786, 947, 1566
Cac8I GCNNGC 2 cut(s) 158, 1180
CsiI ACCWGGT 1 cut(s) 83
Csp6I GTAC 4 cut(s) 222, 384, 769, 1392
CviQI GTAC 4 cut(s) 222, 384, 769, 1392
DdeI CTNAG 6 cut(s) 28, 543, 877, 914, 1269, 1716
DpnI GATC 6 cut(s) 228, 264, 347, 620, 1290, 1449
DpnII GATC 6 cut(s) 226, 262, 345, 618, 1288, 1447
DriI GACNNNNNGTC 2 cut(s) 508, 847
EaeI YGGCCR 1 cut(s) 1138
Eam1104I CTCTTC 1 cut(s) 1544
Eam1105I GACNNNNNGTC 2 cut(s) 508, 847
EarI CTCTTC 1 cut(s) 1544
EciI GGCGGA 1 cut(s) 1487
Ecl136II GAGCTC 1 cut(s) 1730
Eco130I CCWWGG 2 cut(s) 924, 1587
Eco147I AGGCCT 2 cut(s) 33, 1685
Eco24I GRGCYC 1 cut(s) 1732
Eco32I GATATC 2 cut(s) 241, 1387
Eco53kI GAGCTC 1 cut(s) 1730
Eco57I CTGAAG 5 cut(s) 923, 1155, 1281, 1444, 1700
Eco81I CCTNAGG 1 cut(s) 1716
Eco88I CYCGRG 1 cut(s) 1502
EcoICRI GAGCTC 1 cut(s) 1730
EcoNI CCTNNNNNAGG 3 cut(s) 1047, 1409, 1502
EcoRI GAATTC 1 cut(s) 1110
EcoRII CCWGG 3 cut(s) 83, 1140, 1341
EcoRV GATATC 2 cut(s) 241, 1387
EcoT14I CCWWGG 2 cut(s) 924, 1587
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 1732
ErhI CCWWGG 2 cut(s) 924, 1587
FalI AAGNNNNNCTT 2 cut(s) 1041, 1073
FaqI GGGAC 2 cut(s) 473, 1542
FauI CCCGC 1 cut(s) 58
FauNDI CATATG 2 cut(s) 1329, 1642
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 4 cut(s) 806, 946, 1176, 1779
FokI GGATG 3 cut(s) 997, 1166, 1509
FriOI GRGCYC 1 cut(s) 1732
Fsp4HI GCNGC 4 cut(s) 806, 946, 1176, 1779
FspBI CTAG 8 cut(s) 167, 500, 560, 626, 900, 1044, 1107, 1317
GluI GCNGC 4 cut(s) 806, 946, 1176, 1779
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 3 cut(s) 33, 1140, 1685
HinfI GANTC 6 cut(s) 539, 570, 689, 833, 1145, 1808
HphI GGTGA 2 cut(s) 719, 1431
Hpy166II GTNNAC 4 cut(s) 841, 971, 1243, 1566
Hpy188III TCNNGA 7 cut(s) 305, 560, 669, 763, 900, 1286, 1453
Hpy8I GTNNAC 4 cut(s) 841, 971, 1243, 1566
Hpy99I CGWCG 1 cut(s) 405
HpyCH4III ACNGT 8 cut(s) 77, 107, 281, 331, 340, 487, 1001, 1096
HpyCH4IV ACGT 1 cut(s) 1239
HpyCH4V TGCA 8 cut(s) 184, 233, 430, 945, 1101, 1223, 1361, 1603
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 1184, 1358, 1583
HpyF3I CTNAG 6 cut(s) 28, 543, 877, 914, 1269, 1716
HpySE526I ACGT 1 cut(s) 1239
KpnI GGTACC 1 cut(s) 387
Kzo9I GATC 6 cut(s) 226, 262, 345, 618, 1288, 1447
LmnI GCTCC 2 cut(s) 353, 1765
Lsp1109I GCAGC 3 cut(s) 957, 1187, 1790
LweI GCATC 7 cut(s) 124, 435, 439, 1196, 1210, 1249, 1531
MabI ACCWGGT 1 cut(s) 83
MaeI CTAG 8 cut(s) 167, 500, 560, 626, 900, 1044, 1107, 1317
MaeII ACGT 1 cut(s) 1239
MaeIII GTNAC 4 cut(s) 87, 995, 1032, 1204
MalI GATC 6 cut(s) 228, 264, 347, 620, 1290, 1449
MboI GATC 6 cut(s) 226, 262, 345, 618, 1288, 1447
MboII GAAGA 6 cut(s) 248, 628, 1161, 1287, 1561, 1624
MfeI CAATTG 2 cut(s) 505, 794
MflI RGATCY 4 cut(s) 226, 345, 618, 1288
MhlI GDGCHC 2 cut(s) 358, 1732
MlsI TGGCCA 1 cut(s) 1140
MluNI TGGCCA 1 cut(s) 1140
MlyI GAGTC 1 cut(s) 1154
MmeI TCCRAC 1 cut(s) 240
Mox20I TGGCCA 1 cut(s) 1140
Mph1103I ATGCAT 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 1685
MscI TGGCCA 1 cut(s) 1140
MseI TTAA 8 cut(s) 195, 204, 425, 611, 681, 930, 1016, 1626
MslI CAYNNNNRTG 2 cut(s) 892, 923
Msp20I TGGCCA 1 cut(s) 1140
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 3 cut(s) 85, 1142, 1343
MunI CAATTG 2 cut(s) 505, 794
Mva1269I GAATGC 1 cut(s) 1544
MvaI CCWGG 3 cut(s) 85, 1142, 1343
MwoI GCNNNNNNNGC 4 cut(s) 362, 1184, 1358, 1583
NcoI CCATGG 1 cut(s) 924
NdeI CATATG 2 cut(s) 1329, 1642
NdeII GATC 6 cut(s) 226, 262, 345, 618, 1288, 1447
NlaIV GGNNCC 1 cut(s) 385
NmeAIII GCCGAG 1 cut(s) 1807
NmuCI GTSAC 3 cut(s) 87, 995, 1204
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 3 cut(s) 977, 1074, 1127
OliI CACNNNNGTG 1 cut(s) 892
PaeR7I CTCGAG 1 cut(s) 1502
PceI AGGCCT 2 cut(s) 33, 1685
PciI ACATGT 2 cut(s) 973, 1070
PcsI WCGNNNNNNNCGW 1 cut(s) 1245
PctI GAATGC 1 cut(s) 1544
PdmI GAANNNNTTC 1 cut(s) 1685
PfeI GAWTC 5 cut(s) 539, 570, 689, 833, 1808
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 4 cut(s) 807, 947, 1177, 1780
PleI GAGTC 1 cut(s) 1153
PpsI GAGTC 1 cut(s) 1153
PscI ACATGT 2 cut(s) 973, 1070
PshAI GACNNNNGTC 1 cut(s) 1211
PshBI ATTAAT 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 1732
Psp6I CCWGG 3 cut(s) 83, 1140, 1341
PspGI CCWGG 3 cut(s) 83, 1140, 1341
PspN4I GGNNCC 1 cut(s) 385
PspXI VCTCGAGB 1 cut(s) 1502
PstI CTGCAG 1 cut(s) 1363
PsuI RGATCY 4 cut(s) 226, 345, 618, 1288
RsaI GTAC 4 cut(s) 223, 385, 770, 1393
RsaNI GTAC 4 cut(s) 222, 384, 769, 1392
RseI CAYNNNNRTG 2 cut(s) 892, 923
SacI GAGCTC 1 cut(s) 1732
SaqAI TTAA 8 cut(s) 195, 204, 425, 611, 681, 930, 1016, 1626
SatI GCNGC 4 cut(s) 806, 946, 1176, 1779
Sau3AI GATC 6 cut(s) 226, 262, 345, 618, 1288, 1447
ScaI AGTACT 2 cut(s) 770, 1393
SchI GAGTC 1 cut(s) 1154
ScrFI CCNGG 3 cut(s) 85, 1142, 1343
SduI GDGCHC 2 cut(s) 358, 1732
SexAI ACCWGGT 1 cut(s) 83
SfaNI GCATC 7 cut(s) 124, 435, 439, 1196, 1210, 1249, 1531
SfcI CTRYAG 4 cut(s) 330, 551, 837, 1359
Sfr274I CTCGAG 1 cut(s) 1502
SlaI CTCGAG 1 cut(s) 1502
SmiMI CAYNNNNRTG 2 cut(s) 892, 923
SmlI CTYRAG 1 cut(s) 1502
SmoI CTYRAG 1 cut(s) 1502
SseBI AGGCCT 2 cut(s) 33, 1685
SsiI CCGC 3 cut(s) 65, 805, 1472
SspI AATATT 1 cut(s) 1090
SspMI CTAG 8 cut(s) 167, 500, 560, 626, 900, 1044, 1107, 1317
SstI GAGCTC 1 cut(s) 1732
StuI AGGCCT 2 cut(s) 33, 1685
StyD4I CCNGG 3 cut(s) 83, 1140, 1341
StyI CCWWGG 2 cut(s) 924, 1587
TaaI ACNGT 8 cut(s) 77, 107, 281, 331, 340, 487, 1001, 1096
TaiI ACGT 1 cut(s) 1242
TaqI TCGA 5 cut(s) 403, 1080, 1248, 1407, 1503
TatI WGTACW 2 cut(s) 768, 1391
TauI GCSGC 1 cut(s) 808
TfiI GAWTC 5 cut(s) 539, 570, 689, 833, 1808
Tru1I TTAA 8 cut(s) 195, 204, 425, 611, 681, 930, 1016, 1626
Tru9I TTAA 8 cut(s) 195, 204, 425, 611, 681, 930, 1016, 1626
TscAI CASTG 4 cut(s) 490, 793, 947, 1573
TseFI GTSAC 3 cut(s) 87, 995, 1204
TseI GCWGC 3 cut(s) 945, 1175, 1778
Tsp45I GTSAC 3 cut(s) 87, 995, 1204
TspDTI ATGAA 6 cut(s) 135, 290, 333, 467, 562, 629
TspGWI ACGGA 4 cut(s) 158, 551, 1321, 1778
TspRI CASTG 4 cut(s) 490, 793, 947, 1573
Van91I CCANNNNNTGG 1 cut(s) 380
VspI ATTAAT 1 cut(s) 425
XagI CCTNNNNNAGG 3 cut(s) 1047, 1409, 1502
XapI RAATTY 5 cut(s) 389, 454, 1110, 1415, 1662
XbaI TCTAGA 2 cut(s) 559, 899
XceI RCATGY 3 cut(s) 977, 1074, 1127
XhoI CTCGAG 1 cut(s) 1502
XmiI GTMKAC 1 cut(s) 840
XmnI GAANNNNTTC 1 cut(s) 1685
XspI CTAG 8 cut(s) 167, 500, 560, 626, 900, 1044, 1107, 1317
ZrmI AGTACT 2 cut(s) 770, 1393
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.