Rorug05G0403700

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001222
Physical Location & Seq
Forward (+)
55527204 .. 55530217
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0403700.1

Sequence Viewer

Length: 882 bp
ATGGAAACGATGCCCTGTTGTCATCGTTCAGAAAGAAAGGAGTTTGGTCATGAAGATCATTTGTCTCTTACAGAGCTTGGAGCTGGGAATTTTGGGTGCTCGCATTATAAAAGAAGATGCAAAATCAGAGCTCCTTGTTGTAACGAGGTTTATGATTGCCGGCATTGCCATGATGAAGCAAAGGACTCCCTAGATACTGATCCCCTTGATCGACATGTCATTTCTCGTCACGAGGTTAAGAAGGTCATCTGCTGTCTGTGTGGCATAGAACAAGATGTTCAACAACATTGCGTTAGCTGCGGGGTTTGCTTGGGAAAGTACTTTTGCGCGATATGCAACTTCTATGATGATGATGTTTCAAAAGATATATACCACTGTGATAAATGTGGAATATGCAGAATCGGAGGGGGAGAAAATTTCTTCCATTGTGAGAAATGCGGATGCTGCTACCCTAAGTCAGTGAAAGATCATCGCTGTATAGAAAGGGCAATGCACCATAACTGTCCTGTTTGTTTTGAGTTTCTATTTGATTCAAGGAGAGATATTAGCATATTACGCTGTGGACACACAATACATTGTGAATGTCTGAAAGAGATGAAGCTGCATGCACAGTATTCATGCCCTATCTGCTCAAAGTCCATCTATGATATGTCCAACTTGTGGAAAAAGCTTGATGAACTGGTTGCCTCAACTCCAATGCCTCATGCGTACAGAACCAAAATAGTGGGGATCCTCTGCAATGATTGTGGAGCTAAAGGCGAAGTCAGTTTTCACATTGTCGCACACAAATGTCTCAGCTGCAATTCTTACAATACCAAACAGACACAAGGAGGTCATGGTGCTTCATGCTTATCAGATCATGTGGCTGAGATAGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

293

Amino Acids

33.25

Weight (kDa)

7.02

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 33 - 107 5.1e-17 CHY zinc finger
zf-RING_5 PF14634 167 - 212 4.6e-07 zinc-RING finger domain
zf-RING_2 PF13639 167 - 210 3.4e-06 Ring finger domain
zinc_ribbon_6 PF14599 216 - 273 6.2e-25 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 660
AccII CGCG 1 cut(s) 329
AciI CCGC 2 cut(s) 300, 438
AclWI GGATC 3 cut(s) 194, 724, 737
AcsI RAATTY 2 cut(s) 88, 415
AfaI GTAC 2 cut(s) 320, 710
AfiI CCNNNNNNNGG 1 cut(s) 660
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 3 cut(s) 281, 360, 534
AluBI AGCT 8 cut(s) 76, 83, 131, 297, 601, 670, 752, 798
AluI AGCT 8 cut(s) 76, 83, 131, 297, 601, 670, 752, 798
Alw21I GWGCWC 2 cut(s) 101, 133
Alw26I GTCTC 2 cut(s) 69, 797
AlwI GGATC 3 cut(s) 194, 724, 737
ApeKI GCWGC 4 cut(s) 297, 444, 601, 798
ApoI RAATTY 2 cut(s) 88, 415
AspLEI GCGC 1 cut(s) 329
BamHI GGATCC 1 cut(s) 729
BanII GRGCYC 1 cut(s) 133
BauI CACGAG 1 cut(s) 230
Bbv12I GWGCWC 2 cut(s) 101, 133
BbvI GCAGC 4 cut(s) 284, 431, 588, 785
BccI CCATC 1 cut(s) 647
BcoDI GTCTC 2 cut(s) 69, 797
BfaI CTAG 1 cut(s) 191
BisI GCNGC 4 cut(s) 298, 445, 602, 799
BlsI GCNGC 4 cut(s) 299, 446, 603, 800
BmcAI AGTACT 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 731
BmsI GCATC 2 cut(s) 107, 431
BsaBI GATNNNNATC 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 660
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 684
Bse3DI GCAATG 4 cut(s) 163, 286, 495, 745
Bse8I GATNNNNATC 1 cut(s) 198
BseGI GGATG 1 cut(s) 446
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 660
BseMI GCAATG 4 cut(s) 163, 286, 495, 745
BseMII CTCAG 2 cut(s) 808, 858
BseNI ACTGG 1 cut(s) 684
BseXI GCAGC 4 cut(s) 284, 431, 588, 785
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 329
BsiHKAI GWGCWC 2 cut(s) 101, 133
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 660
BsmAI GTCTC 2 cut(s) 69, 797
Bsp1286I GDGCHC 2 cut(s) 101, 133
Bsp143I GATC 6 cut(s) 55, 199, 208, 466, 729, 856
BspACI CCGC 2 cut(s) 300, 438
BspCNI CTCAG 2 cut(s) 807, 859
BspFNI CGCG 1 cut(s) 329
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 731
BspPI GGATC 3 cut(s) 194, 724, 737
BsrDI GCAATG 4 cut(s) 163, 286, 495, 745
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 1 cut(s) 684
BssAI RCCGGY 1 cut(s) 159
BssMI GATC 6 cut(s) 55, 199, 208, 466, 729, 856
BssSI CACGAG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 230
Bst4CI ACNGT 3 cut(s) 377, 503, 612
BstC8I GCNNGC 3 cut(s) 101, 161, 606
BstDEI CTNAG 3 cut(s) 453, 794, 867
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 6 cut(s) 58, 202, 211, 469, 732, 859
BstMAI GTCTC 2 cut(s) 69, 797
BstMBI GATC 6 cut(s) 55, 199, 208, 466, 729, 856
BstMWI GCNNNNNNNGC 7 cut(s) 165, 297, 306, 333, 444, 555, 627
BstNSI RCATGY 2 cut(s) 218, 608
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 4 cut(s) 284, 431, 588, 785
BstX2I RGATCY 1 cut(s) 729
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 1 cut(s) 729
BtgZI GCGATG 1 cut(s) 455
BtsCI GGATG 1 cut(s) 446
BtsIMutI CAGTG 2 cut(s) 373, 465
Cac8I GCNNGC 3 cut(s) 101, 161, 606
CciI TCATGA 1 cut(s) 49
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 159
Csp6I GTAC 2 cut(s) 319, 709
CspCI CAANNNNNGTGG 2 cut(s) 727, 762
CviAII CATG 9 cut(s) 50, 170, 215, 605, 618, 704, 836, 846, 860
CviJI RGCY 9 cut(s) 76, 83, 131, 297, 601, 670, 752, 798, 866
CviKI_1 RGCY 9 cut(s) 76, 83, 131, 297, 601, 670, 752, 798, 866
CviQI GTAC 2 cut(s) 319, 709
DdeI CTNAG 3 cut(s) 453, 794, 867
DpnI GATC 6 cut(s) 57, 201, 210, 468, 731, 858
DpnII GATC 6 cut(s) 55, 199, 208, 466, 729, 856
Ecl136II GAGCTC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 9 cut(s) 53, 173, 218, 608, 621, 707, 839, 849, 863
FatI CATG 9 cut(s) 49, 169, 214, 604, 617, 703, 835, 845, 859
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 4 cut(s) 298, 445, 602, 799
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 4 cut(s) 298, 445, 602, 799
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 328
GluI GCNGC 4 cut(s) 298, 445, 602, 799
GsaI CCCAGC 1 cut(s) 87
HapII CCGG 1 cut(s) 160
HhaI GCGC 1 cut(s) 329
Hin1II CATG 9 cut(s) 53, 173, 218, 608, 621, 707, 839, 849, 863
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 3 cut(s) 185, 399, 530
HpaII CCGG 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 563
Hpy188I TCNGA 5 cut(s) 31, 128, 404, 588, 856
Hpy188III TCNNGA 2 cut(s) 50, 230
Hpy8I GTNNAC 1 cut(s) 563
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 3 cut(s) 377, 503, 612
HpyCH4V TGCA 8 cut(s) 120, 336, 396, 493, 604, 608, 738, 801
HpyF10VI GCNNNNNNNGC 7 cut(s) 165, 297, 306, 333, 444, 555, 627
HpyF3I CTNAG 3 cut(s) 453, 794, 867
Hsp92II CATG 9 cut(s) 53, 173, 218, 608, 621, 707, 839, 849, 863
HspAI GCGC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Kzo9I GATC 6 cut(s) 55, 199, 208, 466, 729, 856
LmnI GCTCC 3 cut(s) 80, 136, 749
LpnPI CCDG 5 cut(s) 28, 69, 173, 519, 665
Lsp1109I GCAGC 4 cut(s) 284, 431, 588, 785
LweI GCATC 2 cut(s) 107, 431
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 140, 227
MalI GATC 6 cut(s) 57, 201, 210, 468, 731, 858
MboI GATC 6 cut(s) 55, 199, 208, 466, 729, 856
MboII GAAGA 3 cut(s) 65, 126, 412
MflI RGATCY 1 cut(s) 729
MhlI GDGCHC 2 cut(s) 101, 133
MluCI AATT 3 cut(s) 88, 415, 802
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 7 cut(s) 139, 226, 398, 697, 711, 743, 824
MroNI GCCGGC 1 cut(s) 159
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 2 cut(s) 168, 787
MspA1I CMGCKG 1 cut(s) 798
MspI CCGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 7 cut(s) 165, 297, 306, 333, 444, 555, 627
NaeI GCCGGC 1 cut(s) 161
NdeII GATC 6 cut(s) 55, 199, 208, 466, 729, 856
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 9 cut(s) 53, 173, 218, 608, 621, 707, 839, 849, 863
NlaIV GGNNCC 1 cut(s) 731
NmuCI GTSAC 1 cut(s) 227
NspI RCATGY 2 cut(s) 218, 608
PaeI GCATGC 1 cut(s) 608
PagI TCATGA 1 cut(s) 49
PciI ACATGT 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 399, 530
PflMI CCANNNNNTGG 1 cut(s) 660
PkrI GCNGC 4 cut(s) 299, 446, 603, 800
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PscI ACATGT 1 cut(s) 214
PsiI TTATAA 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 729
PvuII CAGCTG 1 cut(s) 798
RsaI GTAC 2 cut(s) 320, 710
RsaNI GTAC 2 cut(s) 319, 709
RseI CAYNNNNRTG 2 cut(s) 168, 787
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 4 cut(s) 298, 445, 602, 799
Sau3AI GATC 6 cut(s) 55, 199, 208, 466, 729, 856
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 1 cut(s) 179
SduI GDGCHC 2 cut(s) 101, 133
SfaNI GCATC 2 cut(s) 107, 431
SmiMI CAYNNNNRTG 2 cut(s) 168, 787
SphI GCATGC 1 cut(s) 608
Sse9I AATT 3 cut(s) 88, 415, 802
SsiI CCGC 2 cut(s) 300, 438
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 133
TaaI ACNGT 3 cut(s) 377, 503, 612
TaqI TCGA 1 cut(s) 211
TasI AATT 3 cut(s) 88, 415, 802
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 2 cut(s) 399, 530
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 380, 465
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 4 cut(s) 297, 444, 601, 798
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 6 cut(s) 66, 189, 606, 611, 690, 834
TspRI CASTG 2 cut(s) 380, 465
Van91I CCANNNNNTGG 1 cut(s) 660
XapI RAATTY 2 cut(s) 88, 415
XceI RCATGY 2 cut(s) 218, 608
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.