pycom03g05300

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001222
Physical Location & Seq
Reverse (-)
4133358 .. 4133774
417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05300.1

Sequence Viewer

Length: 417 bp
ATGCAAAATCCAACGTCCCCAAATGGAGGTTTGTCTATTAATCCAGACTCTGCCTGTGTGCAGCAGGTTCAAGAGAAATCTTATATGGATAAATTGATCTCTGTGTCAGGGGATGAATTACCAGATAAAGGCGTGTCTGTTCTACGTCTACCTCAGGTTTTGTCGGCATTTCCTTCTAATCGTGATGGGAATTCATGTGTCAATTCTGGTATCAGAAATGGTGGAATTCGTAGTTTTAAATCCAGAAGCAAAAGTACCCTTAATTGGCTACCTTTGGATTCTCAAGCTGTATATTGCCCTGTTGCTGTTGACGAATATTTGGACAAGCGTTCTAATTTCATAGGGACAGCTGTTAGGCAGCATCTTCAATATTTAGAGTGGAAAATGGAATTTGCAATCGATAAGGGCAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

139

Amino Acids

15.24

Weight (kDa)

8.46

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 148
AcsI RAATTY 3 cut(s) 190, 225, 389
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 3 cut(s) 26, 128, 264
AgsI TTSAA 2 cut(s) 71, 368
AluBI AGCT 2 cut(s) 287, 350
AluI AGCT 2 cut(s) 287, 350
AlwNI CAGNNNCTG 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 61, 358
ApoI RAATTY 3 cut(s) 190, 225, 389
AseI ATTAAT 1 cut(s) 39
AxyI CCTNAGG 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 238, 270
BbvI GCAGC 2 cut(s) 73, 370
BccI CCATC 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 2 cut(s) 62, 359
BlsI GCNGC 2 cut(s) 63, 360
BmsI GCATC 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 267
Bsa29I ATCGAT 1 cut(s) 399
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 128, 264
Bse21I CCTNAGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 399
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 3 cut(s) 26, 128, 264
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 73, 370
BsgI GTGCAG 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 399
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 3 cut(s) 26, 128, 264
BsmFI GGGAC 1 cut(s) 358
Bsp143I GATC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 55
BssMI GATC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 73, 370
Bsu15I ATCGAT 1 cut(s) 399
Bsu36I CCTNAGG 1 cut(s) 153
BsuTUI ATCGAT 1 cut(s) 399
BtsCI GGATG 1 cut(s) 118
BveI ACCTGC 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 195
CviJI RGCY 3 cut(s) 268, 287, 350
CviKI_1 RGCY 3 cut(s) 268, 287, 350
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
DraI TTTAAA 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 153
EcoRI GAATTC 2 cut(s) 190, 225
FaeI CATG 1 cut(s) 198
FaiI YATR 6 cut(s) 84, 86, 196, 292, 341, 415
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 194
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 62, 359
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 62, 359
GluI GCNGC 2 cut(s) 62, 359
Hin1II CATG 1 cut(s) 198
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 2 cut(s) 47, 278
Hpy166II GTNNAC 2 cut(s) 149, 310
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 4 cut(s) 44, 71, 182, 243
Hpy8I GTNNAC 2 cut(s) 149, 310
HpyAV CCTTC 1 cut(s) 183
HpyCH4IV ACGT 2 cut(s) 14, 145
HpyCH4V TGCA 3 cut(s) 4, 61, 395
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 14, 145
Hsp92II CATG 1 cut(s) 198
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 9 cut(s) 50, 57, 67, 93, 135, 140, 192, 256, 312
Lsp1109I GCAGC 2 cut(s) 73, 370
LweI GCATC 1 cut(s) 370
MaeII ACGT 2 cut(s) 14, 145
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 356
MluCI AATT 8 cut(s) 92, 116, 190, 202, 225, 262, 334, 389
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 2 cut(s) 20, 162
MseI TTAA 3 cut(s) 39, 237, 261
MspA1I CMGCKG 1 cut(s) 350
NdeII GATC 1 cut(s) 96
NlaIII CATG 1 cut(s) 198
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 63, 360
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PshBI ATTAAT 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 39, 237, 261
SatI GCNGC 2 cut(s) 62, 359
Sau3AI GATC 1 cut(s) 96
SchI GAGTC 1 cut(s) 41
SetI ASST 9 cut(s) 17, 31, 69, 148, 154, 159, 274, 289, 352
SfaNI GCATC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 8 cut(s) 92, 116, 190, 202, 225, 262, 334, 389
SspI AATATT 2 cut(s) 317, 371
TaiI ACGT 2 cut(s) 17, 148
TaqI TCGA 1 cut(s) 399
TasI AATT 8 cut(s) 92, 116, 190, 202, 225, 262, 334, 389
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 3 cut(s) 39, 237, 261
Tru9I TTAA 3 cut(s) 39, 237, 261
TseI GCWGC 2 cut(s) 61, 358
TspDTI ATGAA 3 cut(s) 129, 183, 328
VspI ATTAAT 1 cut(s) 39
XapI RAATTY 3 cut(s) 190, 225, 389
XmiI GTMKAC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.