Rh5AG459600

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001222
Physical Location & Seq
Forward (+)
78761796 .. 78769783
7988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG459600.1

Sequence Viewer

Length: 3552 bp
ATGGCGGTGGCCATGGCCCTTGAAGAACAGGGCCGGCGTGTTAATAAGAGAAACCATAATTTGAGACAAAATCAAGGGAAGTTACTTTTTGGTGCCAAAGTTGAGGTGAGGAGTAAAGAAGAAGGGTTTCAGGGCTCGTGGCACTCTGGGACTGTCACTGCATGCACCAAAGGTTGTCGTAAAGTAGAATACGATCATATTCTTTGTGATGATGAGTCTGCTAATCTTGTGGATGCTGTTTATGTTTCTCCCATTTTGGATGGCATTGATTCTGTAACTGATGAGCCGAGTAATTACCATTGCGGAAGTATAAGGCCAAAGCCGCCTAAGATTGAGGTAGGGGCATGGGGTCTTCCCTATGGACTCTGTGTGGATGTGTATCATCAGGATGCTTGGTGGGAAGGTGTGGTTTTTGATCATGAAGATGGTTCAGAAAAGAGGAGGATCTTCTTTCCAGATTTGGGAGATGAACTAACAACTGGAATTGACACTTTAAGAATTACTCAGGACTGGGATGAGGTTACAGAGAATTGGCAGCGACGTGGGACTTGGATATTTCTTGAGTTGATTGAACAATATGAGCAAGAGAGGTACATTGCTGTCTCTGTGAAGCAAGTTTGGTATGATGTTCGATTAAAAGAGGGCTTTGAGAAGGTCAGGCAGTGGACTTCTCCAATGAGATATCTATGGGAGGAGCTGGTGTTGGAGGTCATTGATGATAACTTAAGCATCACCGCAGATGAACTTTTTCGGGTGTTAGAAGTGTCAGGATGCTTGTCAAGAGAATCCCAGGTAGAGTTCGAGTCAGCTCAATGTGTCTTAGATGCTGATATGAATTCTAAATCATATACCACACACTCTCTTGCTATTGTACCTGTTGGCAACACATTGGATAGTAATTTGTTAGTTGATCATGATGATTTTATGAAGAATGTATTGGACTGTAGGGCTGGGATTGCTGATGAACAAAGTGAAGGTTTGTCGATCATTGAAAGGACCTCCCGACAAAATTTCAATGGAACTTCTTCTGCAAAATCTGATATTAGCAGTGATGGAATTTGTGTTACTAAATCCAAAGGCAGAAGAACAGCAAATTGGCTACCTGTGGAACTTCATAAAGAGTCTTGCCCTAGTGCTGTTGATAAGTACTTGGGTAAGGGACGGCTGCCTTCAGGGGAGTTACAAACAGCTGTTAGGAAGCATCTTTTATATTTGGGTTGGAAAGTAGAGTATATGATAGATAAGGGCAGAATGAGATACCGGTACTTGTCGCCTGATGGAGAACCCGAATACTCTCTTATTAAAGTGTGCAGTAACTTGAGAACGTCCTCAAAAGATTCACAATTTGCAATCTCTCAAGAAGCACCTCAGTGTTTGCATGATTCACCTGGACAGCTTCTTGTCACTGAAGAACCACAAGAGATTCAGCATCCTAATTATTGTCCTCAACAGGTAGCGTCTCCTTTTTCCAATTCCAAGTTACATGATCCCGAGGTATTTATTTACAAACCCGAATATTGCCCTCAAGCAGTTGTGGCATATGTAGACTCTCCCATAAGGGGACCCAGAAGTTTGAGAGTAAAAACAATGCGGTCTAAAGCAAAGAAGCACCTCTCTGCTGTGGGGTGGGAGTTCTACTACTCAGAAATAAGATCATCAAATAGCTTGCGCTTCAAATCTCCCAAAGGAAATGTATACAACTCACTTCTGGATGCCTGCAAAGTCTGTATGGATGAAGAAAATTCTGAAAGAAGACCTGCTGAATGCAGGTATGTCATTGACGAAGATGAGGCCCACTTAATTAAGAAAAAAATATTTTCTGTAGCAAATAGAAAACGCAAAAGGAATAGAATTTGTAGCTTGTTAAACAGTGGACCTCACTTGCTTCACGAATGCCCAAAGGATCAATGTGCTAACCCTCCAAAGTTGAAAAGGCGAAAGGCATCTGCATCTTCCTCTGGGTTTAGAAATGGTTCTGGTGTTAGTCAGCCAACTCGTGTGCTCAGGTCAAGCAAACGAGTCCAGGAAGTGGTTACTCCTACTTCCACACACCAGAATCCCCGCACTGTCTTATCTTGGTTGATAGACAATAATGTGGTTTTGCCAAGGGAAAAAGTACATTATTGTAGCAGAAAGGGTGGTCCTTCAATGGCAGAAGGGAAAATAAGTAGAGAGGGGATCAAGTGCAGCTGTTGCCAAAAGGTGTTTACTCTTAGCTGCTTTGAGAGTCATGCTGGCTTCAATGAGACTCATGCTGGCTGCAGTAACCACAGACCTGCTTCCAATATTTTTCTGGATGATGGTAGGTCTCTCTTGGATTGCCAGATGCAAATTATACTTGAAAGAAGGAAGAGGACTTGTAGAACAGAACCACGCCATAGGATGAAGGGAAATCGAGTTCGAGGCGAGAGTGATTACATATGTACTGTGTGTCACTATGGTGGTGATTTAATCTTATGTGACGAATGTCCGTCATCATTTCACAAGAGTTGCGTTGGGTTGAAGGATGTTCCAGATGGTGAGTGGTTCTGTCCATCTTGCTGTTGTGGATTATGTGGCCAAAGAAAACTCAAAGAAGACAAAGAACCTATTATGCATTCTGATTTTCTCACATGTGGTCAATGCGAGCACAAATATCACACTGGGTGCCTGAGAAAAGGAGGTGTGGATATGTCGGAAAGTGATTCAAAAGGAAATTGGTTTTGCAGCAAGAATTGTAAAAAGATATCTTTGGGCCTCCACAAGCTTTTAGGGAAACAATTTCCAGCGGGTGTTGGCAATTTAACTTGGTCACTTCTGAAGTCCATGAAATCTGATAGTGATGATGCTACTGAACCTGACAATGATGCCATAACGGAGAGTTTTAGCAGGCTTAGTATTGCCCTTGATGTGATGCACGAGTGTTTTGAGCCTGTTAAGGAACCTCTTACCAGGAGAGATCTTGCAGAAGATATCATCTTCAGTAGAGGGTCAAATCTCAATCGCTTGAACTTTCAAGGGTTCTATACCATGCTATTGGAAAGAAATGATGAGCTAATCACTGTGGCTACTGTAAGGATCTATGGAAAGAAGGTGGCCGAAGTACCTCTTGTTGCTACCAGATTTCAATATCGTCGACTTGGAATGTGTCGTGTGTTGATGAATTTACTTGAAAAGATGCTTATGGATTTAGGTGTGGAGAGATTGGTTTTGCCCGCTGTCCCCAGTGTGCTAAACACATGGACTACTGCATTTGGGTTTTCAAGAATGACAGAGTCTGAGAGGCTACAGTTTCTGGATCATACTTTCCTGGATTTTCAGGATACCATTATGTGTCAGAAACTTTTAATGAAGATCTCTCCAGCTGAACCAAGCCTGTTGAAAGGAACACAGCCTAATATTTCTGGAAGTGGTGATAATATTGATCTTGATGGGTCCAGTTCTGTCTCTGAAGTGTGTCAACTGGAACAAACAGAGGATAGCCAAACCGTATTCCAGGGACTTGAGTATGTCTCACTTCTTCCTACTATAAATTTAGAAGATGGAAATGAATACAAGAACCCATCGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

1183

Amino Acids

133.86

Weight (kDa)

6.44

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 31 - 109 8.4e-14 Agenet domain
DUF7028 PF22970 369 - 442 1e-20 Domain of unknown function (DUF7028)
DUF7028 PF22970 502 - 580 1.4e-23 Domain of unknown function (DUF7028)
TDBD PF16135 720 - 777 1.1e-17 Tify domain binding domain
PHD-1st_NSD PF23011 805 - 847 6.7e-07 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD PF00628 808 - 847 4.7e-08 PHD-finger
IDM1_C PF23209 969 - 1107 6.9e-55 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 1758, 1765, 2284
AccB1I GGYRCC 2 cut(s) 92, 2646
AccB7I CCANNNNNTGG 1 cut(s) 2029
AccI GTMKAC 3 cut(s) 1545, 1695, 3115
AciI CCGC 8 cut(s) 5, 303, 323, 735, 1591, 2062, 2768, 3195
AclWI GGATC 6 cut(s) 452, 1481, 1911, 2186, 3065, 3285
AcoI YGGCCR 3 cut(s) 9, 2557, 3075
AcsI RAATTY 7 cut(s) 835, 1009, 1056, 1741, 1851, 3142, 3511
AcuI CTGAAG 5 cut(s) 1155, 1428, 2819, 2944, 3450
AdeI CACNNNGTG 1 cut(s) 2646
AfaI GTAC 7 cut(s) 593, 873, 1148, 1265, 2118, 2425, 3084
AfiI CCNNNNNNNGG 3 cut(s) 461, 1559, 2029
AflII CTTAAG 1 cut(s) 724
AflIII ACRYGT 1 cut(s) 2612
AgeI ACCGGT 1 cut(s) 1260
AjiI CACGTC 1 cut(s) 542
AjnI CCWGG 6 cut(s) 789, 1387, 2022, 2930, 3288, 3474
AjuI GAANNNNNNNTTGG 4 cut(s) 920, 952, 1078, 1110
AleI CACNNNNGTG 2 cut(s) 1369, 2439
AloI GAACNNNNNNTCC 2 cut(s) 2382, 2414
Alw21I GWGCWC 2 cut(s) 2004, 2631
Alw26I GTCTC 7 cut(s) 58, 607, 1464, 2240, 2313, 3430, 3496
AlwI GGATC 6 cut(s) 452, 1481, 1911, 2186, 3065, 3285
AlwNI CAGNNNCTG 2 cut(s) 3257, 3274
Ama87I CYCGRG 1 cut(s) 1490
AoxI GGCC 8 cut(s) 9, 15, 31, 314, 1791, 2557, 2734, 3075
ApeKI GCWGC 6 cut(s) 535, 1165, 2187, 2217, 2259, 2706
ApoI RAATTY 7 cut(s) 835, 1009, 1056, 1741, 1851, 3142, 3511
AsiGI ACCGGT 1 cut(s) 1260
Asp700I GAANNNNTTC 4 cut(s) 126, 747, 1024, 1972
AspLEI GCGC 1 cut(s) 1671
AspS9I GGNCC 9 cut(s) 16, 31, 996, 1562, 1792, 1874, 2141, 2734, 3414
AsuHPI GGTGA 6 cut(s) 118, 724, 1377, 2456, 2531, 3404
AvaI CYCGRG 1 cut(s) 1490
AvaII GGWCC 5 cut(s) 996, 1562, 1874, 2141, 3414
BalI TGGCCA 2 cut(s) 11, 2559
BanI GGYRCC 2 cut(s) 92, 2646
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 3 cut(s) 136, 1995, 2897
BbsI GAAGAC 3 cut(s) 344, 1759, 2583
Bbv12I GWGCWC 2 cut(s) 2004, 2631
BbvI GCAGC 6 cut(s) 547, 1152, 2199, 2204, 2246, 2718
BceAI ACGGC 1 cut(s) 1178
BciT130I CCWGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
BciVI GTATCC 1 cut(s) 3295
BclI TGATCA 2 cut(s) 415, 910
BcoDI GTCTC 7 cut(s) 58, 607, 1464, 2240, 2313, 3430, 3496
BfaI CTAG 1 cut(s) 1131
BfmI CTRYAG 4 cut(s) 943, 1821, 2260, 3266
BfrI CTTAAG 1 cut(s) 724
BfuAI ACCTGC 3 cut(s) 1758, 1765, 2284
BfuI GTATCC 1 cut(s) 3295
BglII AGATCT 2 cut(s) 2938, 3333
BisI GCNGC 7 cut(s) 323, 536, 1166, 2188, 2218, 2260, 2707
BlsI GCNGC 7 cut(s) 324, 537, 1167, 2189, 2219, 2261, 2708
BmcAI AGTACT 1 cut(s) 1148
Bme1390I CCNGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
Bme18I GGWCC 5 cut(s) 996, 1562, 1874, 2141, 3414
BmeT110I CYCGRG 1 cut(s) 1490
BmgBI CACGTC 1 cut(s) 542
BmgT120I GGNCC 9 cut(s) 16, 31, 996, 1562, 1792, 1874, 2141, 2734, 3414
BmiI GGNNCC 6 cut(s) 94, 1563, 1564, 2648, 2922, 3415
BmrFI CCNGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
BmrI ACTGGG 3 cut(s) 520, 2652, 3198
BmuI ACTGGG 3 cut(s) 520, 2652, 3198
BoxI GACNNNNGTC 1 cut(s) 2466
BpiI GAAGAC 3 cut(s) 344, 1759, 2583
BplI GAGNNNNNCTC 2 cut(s) 3476, 3508
BpmI CTGGAG 1 cut(s) 3324
Bpu10I CCTNAGC 1 cut(s) 2003
BpuEI CTTGAG 5 cut(s) 581, 1339, 1341, 1509, 3503
BsaBI GATNNNNATC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 2313
BsaJI CCNNGG 5 cut(s) 12, 789, 1491, 2105, 3475
BsaWI WCCGGW 1 cut(s) 1260
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 1559, 2029
Bse118I RCCGGY 2 cut(s) 33, 1260
Bse1I ACTGG 6 cut(s) 484, 515, 2647, 3204, 3417, 3447
Bse3DI GCAATG 2 cut(s) 298, 594
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
BseDI CCNNGG 5 cut(s) 12, 789, 1491, 2105, 3475
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 3 cut(s) 461, 1559, 2029
BseMI GCAATG 2 cut(s) 298, 594
BseMII CTCAG 6 cut(s) 518, 1382, 1656, 2017, 2642, 3249
BseNI ACTGG 6 cut(s) 484, 515, 2647, 3204, 3417, 3447
BseRI GAGGAG 3 cut(s) 124, 454, 707
BseXI GCAGC 6 cut(s) 547, 1152, 2199, 2204, 2246, 2718
BseYI CCCAGC 1 cut(s) 950
BsgI GTGCAG 2 cut(s) 1330, 2206
BshFI GGCC 8 cut(s) 11, 17, 33, 316, 1793, 2559, 2736, 3077
BshNI GGYRCC 2 cut(s) 92, 2646
BshTI ACCGGT 1 cut(s) 1260
BsiHKAI GWGCWC 2 cut(s) 2004, 2631
BsiHKCI CYCGRG 1 cut(s) 1490
BsiSI CCGG 2 cut(s) 34, 1261
BslFI GGGAC 6 cut(s) 163, 559, 1173, 1575, 3185, 3492
BslI CCNNNNNNNGG 3 cut(s) 461, 1559, 2029
BsmAI GTCTC 7 cut(s) 58, 607, 1464, 2240, 2313, 3430, 3496
BsmBI CGTCTC 1 cut(s) 1464
BsmFI GGGAC 6 cut(s) 163, 559, 1173, 1575, 3185, 3492
BsmI GAATGC 3 cut(s) 1769, 1898, 2596
BsnI GGCC 8 cut(s) 11, 17, 33, 316, 1793, 2559, 2736, 3077
Bso31I GGTCTC 1 cut(s) 2313
BsoBI CYCGRG 1 cut(s) 1490
Bsp1286I GDGCHC 3 cut(s) 137, 2004, 2631
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 8 cut(s) 5, 303, 323, 735, 1591, 2062, 2768, 3195
BspANI GGCC 8 cut(s) 11, 17, 33, 316, 1793, 2559, 2736, 3077
BspCNI CTCAG 6 cut(s) 517, 1381, 1655, 2016, 2643, 3250
BspHI TCATGA 2 cut(s) 418, 913
BspLI GGNNCC 6 cut(s) 94, 1563, 1564, 2648, 2922, 3415
BspMAI CTGCAG 1 cut(s) 2264
BspMI ACCTGC 3 cut(s) 1758, 1765, 2284
BspPI GGATC 6 cut(s) 452, 1481, 1911, 2186, 3065, 3285
BspT107I GGYRCC 2 cut(s) 92, 2646
BspTI CTTAAG 1 cut(s) 724
BspTNI GGTCTC 1 cut(s) 2313
BsrDI GCAATG 2 cut(s) 298, 594
BsrFI RCCGGY 2 cut(s) 33, 1260
BsrI ACTGG 6 cut(s) 484, 515, 2647, 3204, 3417, 3447
BssAI RCCGGY 2 cut(s) 33, 1260
BssECI CCNNGG 5 cut(s) 12, 789, 1491, 2105, 3475
BssNAI GTATAC 1 cut(s) 1696
BssSI CACGAG 3 cut(s) 136, 1995, 2897
BssT1I CCWWGG 2 cut(s) 12, 2105
Bst1107I GTATAC 1 cut(s) 1696
Bst2BI CACGAG 3 cut(s) 136, 1995, 2897
Bst2UI CCWGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
Bst4CI ACNGT 9 cut(s) 154, 944, 1871, 2068, 2428, 3043, 3052, 3270, 3469
Bst6I CTCTTC 1 cut(s) 2345
BstAFI CTTAAG 1 cut(s) 724
BstAPI GCANNNNNTGC 1 cut(s) 2193
BstC8I GCNNGC 9 cut(s) 35, 163, 1667, 1717, 2236, 2257, 2627, 2870, 3195
BstDSI CCRYGG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 1671
BstMAI GTCTC 7 cut(s) 58, 607, 1464, 2240, 2313, 3430, 3496
BstMWI GCNNNNNNNGC 4 cut(s) 322, 956, 1535, 2193
BstNI CCWGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
BstNSI RCATGY 2 cut(s) 165, 2616
BstPAI GACNNNNGTC 1 cut(s) 2466
BstSCI CCNGG 6 cut(s) 789, 1387, 2022, 2930, 3288, 3474
BstSFI CTRYAG 4 cut(s) 943, 1821, 2260, 3266
BstV1I GCAGC 6 cut(s) 547, 1152, 2199, 2204, 2246, 2718
BstV2I GAAGAC 3 cut(s) 344, 1759, 2583
BstX2I RGATCY 4 cut(s) 444, 2938, 3057, 3333
BstXI CCANNNNNNTGG 1 cut(s) 3016
BstYI RGATCY 4 cut(s) 444, 2938, 3057, 3333
BstZ17I GTATAC 1 cut(s) 1696
BsuI GTATCC 1 cut(s) 3295
BsuRI GGCC 8 cut(s) 11, 17, 33, 316, 1793, 2559, 2736, 3077
BtgI CCRYGG 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 3528
BtrI CACGTC 1 cut(s) 542
BtsI GCAGTG 3 cut(s) 156, 668, 1054
BveI ACCTGC 3 cut(s) 1758, 1765, 2284
Cac8I GCNNGC 9 cut(s) 35, 163, 1667, 1717, 2236, 2257, 2627, 2870, 3195
CaiI CAGNNNCTG 2 cut(s) 3257, 3274
CciI TCATGA 2 cut(s) 418, 913
CfoI GCGC 1 cut(s) 1671
Cfr10I RCCGGY 2 cut(s) 33, 1260
Cfr13I GGNCC 9 cut(s) 16, 31, 996, 1562, 1792, 1874, 2141, 2734, 3414
CseI GACGC 1 cut(s) 1446
Csp6I GTAC 7 cut(s) 592, 872, 1147, 1264, 2117, 2424, 3083
CspAI ACCGGT 1 cut(s) 1260
CviQI GTAC 7 cut(s) 592, 872, 1147, 1264, 2117, 2424, 3083
DraIII CACNNNGTG 1 cut(s) 2646
EaeI YGGCCR 3 cut(s) 9, 2557, 3075
Eam1104I CTCTTC 1 cut(s) 2345
EarI CTCTTC 1 cut(s) 2345
Eco130I CCWWGG 2 cut(s) 12, 2105
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 2313
Eco32I GATATC 3 cut(s) 683, 2727, 2953
Eco47I GGWCC 5 cut(s) 996, 1562, 1874, 2141, 3414
Eco57I CTGAAG 5 cut(s) 1155, 1428, 2819, 2944, 3450
Eco88I CYCGRG 1 cut(s) 1490
EcoO109I RGGNCCY 2 cut(s) 996, 1562
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 6 cut(s) 789, 1387, 2022, 2930, 3288, 3474
EcoRV GATATC 3 cut(s) 683, 2727, 2953
EcoT14I CCWWGG 2 cut(s) 12, 2105
EcoT22I ATGCAT 1 cut(s) 2598
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 12, 2105
Esp3I CGTCTC 1 cut(s) 1464
FalI AAGNNNNNCTT 2 cut(s) 3072, 3104
FaqI GGGAC 6 cut(s) 163, 559, 1173, 1575, 3185, 3492
FauI CCCGC 3 cut(s) 2069, 2761, 3202
FauNDI CATATG 2 cut(s) 1540, 2420
FbaI TGATCA 2 cut(s) 415, 910
FblI GTMKAC 3 cut(s) 1545, 1695, 3115
Fnu4HI GCNGC 7 cut(s) 323, 536, 1166, 2188, 2218, 2260, 2707
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 7 cut(s) 323, 536, 1166, 2188, 2218, 2260, 2707
FspBI CTAG 1 cut(s) 1131
GlaI GCGC 1 cut(s) 1670
GluI GCNGC 7 cut(s) 323, 536, 1166, 2188, 2218, 2260, 2707
GsaI CCCAGC 1 cut(s) 954
GsuI CTGGAG 1 cut(s) 3324
HaeIII GGCC 8 cut(s) 11, 17, 33, 316, 1793, 2559, 2736, 3077
HapII CCGG 2 cut(s) 34, 1261
HgaI GACGC 1 cut(s) 1446
HhaI GCGC 1 cut(s) 1671
Hin6I GCGC 1 cut(s) 1669
HinP1I GCGC 1 cut(s) 1669
HincII GTYRAC 2 cut(s) 3116, 3440
HindII GTYRAC 2 cut(s) 3116, 3440
HindIII AAGCTT 1 cut(s) 2744
HpaII CCGG 2 cut(s) 34, 1261
HphI GGTGA 6 cut(s) 118, 724, 1377, 2456, 2531, 3404
Hpy166II GTNNAC 7 cut(s) 666, 1546, 1696, 1874, 2208, 3116, 3440
Hpy8I GTNNAC 7 cut(s) 666, 1546, 1696, 1874, 2208, 3116, 3440
Hpy99I CGWCG 2 cut(s) 543, 3117
HpyCH4III ACNGT 9 cut(s) 154, 944, 1871, 2068, 2428, 3043, 3052, 3270, 3469
HpyCH4IV ACGT 2 cut(s) 541, 1325
HpyF10VI GCNNNNNNNGC 4 cut(s) 322, 956, 1535, 2193
HpySE526I ACGT 2 cut(s) 541, 1325
HspAI GCGC 1 cut(s) 1669
KflI GGGWCCC 1 cut(s) 1562
KroI GCCGGC 1 cut(s) 33
KroNI GCCGGC 1 cut(s) 35
Ksp22I TGATCA 2 cut(s) 415, 910
LmnI GCTCC 1 cut(s) 694
Lsp1109I GCAGC 6 cut(s) 547, 1152, 2199, 2204, 2246, 2718
MaeI CTAG 1 cut(s) 1131
MaeII ACGT 2 cut(s) 541, 1325
MflI RGATCY 4 cut(s) 444, 2938, 3057, 3333
MhlI GDGCHC 3 cut(s) 137, 2004, 2631
MlsI TGGCCA 2 cut(s) 11, 2559
MluNI TGGCCA 2 cut(s) 11, 2559
MlyI GAGTC 9 cut(s) 224, 357, 812, 1130, 1541, 2028, 2236, 2242, 3263
MmeI TCCRAC 3 cut(s) 684, 1199, 2655
Mox20I TGGCCA 2 cut(s) 11, 2559
Mph1103I ATGCAT 1 cut(s) 2598
MroNI GCCGGC 1 cut(s) 33
MroXI GAANNNNTTC 4 cut(s) 126, 747, 1024, 1972
MscI TGGCCA 2 cut(s) 11, 2559
MslI CAYNNNNRTG 4 cut(s) 387, 423, 1369, 2439
Msp20I TGGCCA 2 cut(s) 11, 2559
MspA1I CMGCKG 5 cut(s) 1190, 2190, 2768, 3197, 3344
MspCI CTTAAG 1 cut(s) 724
MspI CCGG 2 cut(s) 34, 1261
MspR9I CCNGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
Mva1269I GAATGC 3 cut(s) 1769, 1898, 2596
MvaI CCWGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
MwoI GCNNNNNNNGC 4 cut(s) 322, 956, 1535, 2193
NaeI GCCGGC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 12
NdeI CATATG 2 cut(s) 1540, 2420
NgoMIV GCCGGC 1 cut(s) 33
NlaIV GGNNCC 6 cut(s) 94, 1563, 1564, 2648, 2922, 3415
NmeAIII GCCGAG 1 cut(s) 312
NmuCI GTSAC 5 cut(s) 154, 1402, 2432, 2459, 2790
NsiI ATGCAT 1 cut(s) 2598
NspI RCATGY 2 cut(s) 165, 2616
OliI CACNNNNGTG 2 cut(s) 1369, 2439
PacI TTAATTAA 1 cut(s) 1803
PaeI GCATGC 1 cut(s) 165
PagI TCATGA 2 cut(s) 418, 913
PciI ACATGT 1 cut(s) 2612
PctI GAATGC 3 cut(s) 1769, 1898, 2596
PdiI GCCGGC 1 cut(s) 35
PdmI GAANNNNTTC 4 cut(s) 126, 747, 1024, 1972
PfeI GAWTC 7 cut(s) 269, 785, 1337, 1382, 1423, 2056, 2684
PflFI GACNNNGTC 1 cut(s) 3253
PflMI CCANNNNNTGG 1 cut(s) 2029
PfoI TCCNGGA 2 cut(s) 2022, 3288
PinAI ACCGGT 1 cut(s) 1260
PkrI GCNGC 7 cut(s) 324, 537, 1167, 2189, 2219, 2261, 2708
PleI GAGTC 9 cut(s) 223, 357, 811, 1129, 1541, 2027, 2235, 2242, 3262
PpsI GAGTC 9 cut(s) 223, 357, 811, 1129, 1541, 2027, 2235, 2242, 3262
PpuMI RGGWCCY 2 cut(s) 996, 1562
PscI ACATGT 1 cut(s) 2612
PshAI GACNNNNGTC 1 cut(s) 2466
Psp5II RGGWCCY 2 cut(s) 996, 1562
Psp6I CCWGG 6 cut(s) 789, 1387, 2022, 2930, 3288, 3474
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 6 cut(s) 789, 1387, 2022, 2930, 3288, 3474
PspN4I GGNNCC 6 cut(s) 94, 1563, 1564, 2648, 2922, 3415
PspPI GGNCC 9 cut(s) 16, 31, 996, 1562, 1792, 1874, 2141, 2734, 3414
PspPPI RGGWCCY 2 cut(s) 996, 1562
PstI CTGCAG 1 cut(s) 2264
PstNI CAGNNNCTG 2 cut(s) 3257, 3274
PsuI RGATCY 4 cut(s) 444, 2938, 3057, 3333
PsyI GACNNNGTC 1 cut(s) 3253
PvuII CAGCTG 3 cut(s) 1190, 2190, 3344
RsaI GTAC 7 cut(s) 593, 873, 1148, 1265, 2118, 2425, 3084
RsaNI GTAC 7 cut(s) 592, 872, 1147, 1264, 2117, 2424, 3083
RseI CAYNNNNRTG 4 cut(s) 387, 423, 1369, 2439
SalI GTCGAC 1 cut(s) 3114
SatI GCNGC 7 cut(s) 323, 536, 1166, 2188, 2218, 2260, 2707
Sau96I GGNCC 9 cut(s) 16, 31, 996, 1562, 1792, 1874, 2141, 2734, 3414
ScaI AGTACT 1 cut(s) 1148
SchI GAGTC 9 cut(s) 224, 357, 812, 1130, 1541, 2028, 2236, 2242, 3263
ScrFI CCNGG 6 cut(s) 791, 1389, 2024, 2932, 3290, 3476
SduI GDGCHC 3 cut(s) 137, 2004, 2631
SfcI CTRYAG 4 cut(s) 943, 1821, 2260, 3266
SinI GGWCC 5 cut(s) 996, 1562, 1874, 2141, 3414
SmiMI CAYNNNNRTG 4 cut(s) 387, 423, 1369, 2439
SmlI CTYRAG 6 cut(s) 560, 724, 1318, 1356, 1524, 3482
SmoI CTYRAG 6 cut(s) 560, 724, 1318, 1356, 1524, 3482
SphI GCATGC 1 cut(s) 165
SsiI CCGC 8 cut(s) 5, 303, 323, 735, 1591, 2062, 2768, 3195
SspI AATATT 5 cut(s) 1517, 1815, 2287, 3379, 3400
SspMI CTAG 1 cut(s) 1131
StyD4I CCNGG 6 cut(s) 789, 1387, 2022, 2930, 3288, 3474
StyI CCWWGG 2 cut(s) 12, 2105
TaaI ACNGT 9 cut(s) 154, 944, 1871, 2068, 2428, 3043, 3052, 3270, 3469
TaiI ACGT 2 cut(s) 544, 1328
TaqI TCGA 6 cut(s) 631, 801, 983, 2395, 2401, 3115
TatI WGTACW 3 cut(s) 1146, 2116, 2423
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 7 cut(s) 269, 785, 1337, 1382, 1423, 2056, 2684
TseFI GTSAC 5 cut(s) 154, 1402, 2432, 2459, 2790
TseI GCWGC 6 cut(s) 535, 1165, 2187, 2217, 2259, 2706
Tsp45I GTSAC 5 cut(s) 154, 1402, 2432, 2459, 2790
TspGWI ACGGA 2 cut(s) 2460, 2870
Tth111I GACNNNGTC 1 cut(s) 3253
Van91I CCANNNNNTGG 1 cut(s) 2029
Vha464I CTTAAG 1 cut(s) 724
VpaK11BI GGWCC 5 cut(s) 996, 1562, 1874, 2141, 3414
XapI RAATTY 7 cut(s) 835, 1009, 1056, 1741, 1851, 3142, 3511
XceI RCATGY 2 cut(s) 165, 2616
XcmI CCANNNNNNNNNTGG 2 cut(s) 2290, 2520
XmiI GTMKAC 3 cut(s) 1545, 1695, 3115
XmnI GAANNNNTTC 4 cut(s) 126, 747, 1024, 1972
XspI CTAG 1 cut(s) 1131
ZrmI AGTACT 1 cut(s) 1148
Zsp2I ATGCAT 1 cut(s) 2598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.