FvH4_3g38930

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001222
Physical Location & Seq
Forward (+)
33184827 .. 33192004
7178 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38930.t2

Sequence Viewer

Length: 2853 bp
ATGGCCCTTGAAGAACAGGGCCGGCGTGTTAATAAGAGAAACCGTAATTTCACACAAAATCAAAGGAAGTTACTTTTTGGTGCCAAAGTTGAGGTGAGGAATGAGGAAGAAGGGTTTCAGGGGTCGTGGCACCCTGGGACTATCACTGCATGCACCAAAGGTTGTCGTGAAGTAAAATACGATCATATTCTATGTGATGATGGGTCTGGTAATCTTGTGGATGCTGTTTGTGTTTCACCCATTTTGGATGGCCTTGATTCTGTGACTGATGAGCAGAGTAACCATCGTGGAAGTATAAGGCCAAAGCCGCCTAAGATTGAGGTAGGGATATGGGACCTTCCCTATGGACTCTGTGTGGATGTGTATCATCGGGATGCTTGGTGGGAAGGAGTGGTTTTTGATCACGAAGATGGTTCAGAAAAGAGGAGGATATTCTTTCCGGATTTGGGAGATGAACTAACAACTGGAATTGACACTATAAGACTTACTCAAGACTGGGATGCGGTTACAGAGAATTGGCGGAGACGTGGGACTTGGATATTTCTCGAGTTGATTGAACAATATGAGCAACAGAGTTACATTGTTGTCTCTGTAAAGCAAGTTTGGTATGATGTTCGATTAAAAGAGGGCTTTCAGAAGGTGAGGGAGTGGACTTCTCCAATGAGATATCAATGGGAGGAGCTGGTGTTAGAGGTAATTGATGATAACTTGAGCATCACTGCGGATGAAATTTGTCAGCGGTTAGAAGTGTCAGGATGCTTGTCAAGAGAATCTCAGGTAGAGTTTGAGTCAACTCAGTGTGTGTTGGATGCTAATGTGAATCTTAAATCATATATCGCAGACTCTCTTGCTATTGTACCTGTTGGCAATCCATTGGATAGTAATTTGTCAGTTGATCGTGATGCTTTTATGAAGAATGTGTTGGACTGTAGGGCTGGGGTTACTGATGAACAAAGTGAAGGTTTGTCTATCGTTCCAGACTCTACCTGTGTGCAATACATACAAGATAAATCTAACGTGGTTCAATTGATTTCAGTCAAACAGGATGAACTACCAAAGATGAACGTTTTGGAGAACTCAAACTTATCCTTGCAAAATAAAGGGGTGTTTGTGCTACATCAGGTTTTGTCTGGAGTACCTTCATATCTAGAAGAACATTCTTCTGCCAAATCTGATATTAGCAGTGATGGAATTTGTGTTTCTAAATCCAAAGGCAGAAGACCAGCAAAGTGGCTACCTGCAGAACTTCCTAAAGAGTCTTGCCCTGGTGCTGTTGATGAGTATGTAAACTTGCGTAAGGGACAAAGAGCTATTAGGAAGCATCTTTTATATTTGGGTTGGAAAGTAGAATATATGATAGATAAGGGCAGATATAGATTCCGGTACTTGCCGCCCAATGGACAACCCGAATACTCTCTTGTTAAAGTGTGCAGTAACTTGAGAAAGTCCTCGAATGATTCACAATTTGCAATCTCTCAAGATGCACCTCAGGATGGTTCACATGGACAGCCTCTTGTCACTGAACAACCACAAGAGATTCAGCATCCTCGTTATTGTCCAAAACATGTAGTGTCTCCCTTTCCCAATTCCAAGTTACAGCCCAAGGTATTCATTTACAAACCAGAATATTGCCCTCAAGCAGTTGTCGCATATGTAGACTCTCCCACAAGGGGACCCAGAAGTGAGAGAGCAAAAGCACTGCGGTCTAAAGCAAAGAAGCACCTCTCTGCTGTGGGGTGGGAGTTCTACTACTCAGAAGTAAGATCATTAAATAACCTGCGCTTCAAATCACCCAAAGGAAATGTATATAACTCACTTCTGAATGCCTGCAAAGCCTGTATGGATGAAGAAAATTCTGAAGAAAGACCTGCCAAATGTAGATATGTCATCGAGGAAGATGCAGGCCACTTGACTAAAAATAAAATATTTTCTGCAGCAAATAGAAAACGCAAAAGGAAGAGAATTCGTAGCTACAGTACACCTCACTTACTTCACGGACGCCTAAAGGATCAATGTGCTAACCCTTCAAAGTTGAAAAGGCGAAAGGCATCTGCATCTTCCTCTGGGTTTAAAAATGGTTCTGGTGGTAGTCAGCCAACTCGTGTGCTCAGGTCAAGCAAACGAGTTCAGGAAGTGGTTACTCCTAATTCCACACACCAGAATCCGCGAACTGTCTTATCCTGGTTGATAGACAATAATGTAGTTTTGCCAAGGGAAAAAGTACATTATTGTAGCAGAAAGGGTGGCCCTTCAATGGCAGAAGGGAAAATAAGTAGAGAGGGGATCAAGTGCAGCTGTTGCCAAAAGGTGTTTTCTCTTAGCTGCTTTGAGAGTCATGCTGCTGGCTTCAATGATACTCATGCTGGCTGTAGTGACCACAAACCTGCTTCCAATATATTTCTGGATGATGGTAGGTCTCTTCTAGATTGCCAGATGCAAATTATGCATGAAAGAAGGAAGCGGACTTGTAGAACAGAAACATGCCTTAGGATAAAGGGAAATCGAGATCGAGGCAAGAATGATAACATTTGCACTGTGTGTCACTATGGCGGTGATTTAATCTTATGTGACGAATGTCCATCATCATTTCACAAGAGTTGCCTTGGATTGAAGTATGTTCCAAAAGGTGAGTGGTTCTGTCCATCTTGCCGTTGTGGAGTATGTGGCCAAAGAAAAGAAGACAAAGAACCTATTACTCATCCTGATATTCTCACCTGTGGTCAGTGCGAGCACAAATGTAGGTTCATTTTCATCTGTTCAAATCATTCAAAACATTGTTTAGTAAGGGTCTCCTTTTTTTTTGGTGTGGATTCTGTTAGCTACCGTTACCTCACCTTATTGTTGTCCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

951

Amino Acids

107.84

Weight (kDa)

8.68

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 27 - 104 3e-12 Agenet domain
DUF7028 PF22970 416 - 483 4.4e-17 Domain of unknown function (DUF7028)
DUF7028 PF22970 539 - 617 7.5e-24 Domain of unknown function (DUF7028)
TDBD PF16135 755 - 813 1.8e-17 Tify domain binding domain
PHD-1st_NSD PF23011 839 - 884 5.5e-09 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD PF00628 844 - 883 8.3e-08 PHD-finger
IDM1_C PF23209 997 - 1135 1.3e-54 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 1246, 1785, 1876, 2392
AccB1I GGYRCC 2 cut(s) 80, 129
AccI GTMKAC 1 cut(s) 1656
AccII CGCG 1 cut(s) 2167
AccIII TCCGGA 1 cut(s) 439
AclI AACGTT 1 cut(s) 1065
AclWI GGATC 2 cut(s) 2016, 2291
AcoI YGGCCR 1 cut(s) 2665
AcsI RAATTY 4 cut(s) 729, 1191, 1852, 1962
AcuI CTGAAG 1 cut(s) 1878
AcyI GRCGYC 1 cut(s) 1999
AdeI CACNNNGTG 1 cut(s) 2538
AfaI GTAC 5 cut(s) 858, 1137, 1385, 1978, 2223
AfiI CCNNNNNNNGG 5 cut(s) 446, 1397, 1493, 1670, 2254
AflIII ACRYGT 1 cut(s) 1564
AjiI CACGTC 1 cut(s) 527
AjnI CCWGG 3 cut(s) 133, 1264, 2180
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AluBI AGCT 6 cut(s) 682, 1310, 1971, 2295, 2322, 2820
AluI AGCT 6 cut(s) 682, 1310, 1971, 2295, 2322, 2820
Alw21I GWGCWC 2 cut(s) 2109, 2733
Alw26I GTCTC 5 cut(s) 517, 592, 1578, 2421, 2794
AlwI GGATC 2 cut(s) 2016, 2291
Ama87I CYCGRG 1 cut(s) 545
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 7 cut(s) 3, 19, 250, 299, 1903, 2245, 2665
ApeKI GCWGC 4 cut(s) 1934, 2292, 2322, 2339
ApoI RAATTY 4 cut(s) 729, 1191, 1852, 1962
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 1782
AspS9I GGNCC 5 cut(s) 4, 19, 334, 1673, 2246
AsuHPI GGTGA 8 cut(s) 106, 228, 652, 1782, 2564, 2639, 2704, 2824
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 2 cut(s) 334, 1673
AxyI CCTNAGG 2 cut(s) 1488, 2486
BalI TGGCCA 1 cut(s) 2667
BanI GGYRCC 2 cut(s) 80, 129
BauI CACGAG 1 cut(s) 2100
BbsI GAAGAC 2 cut(s) 1225, 2685
Bbv12I GWGCWC 2 cut(s) 2109, 2733
BbvI GCAGC 4 cut(s) 1946, 2304, 2309, 2326
BccI CCATC 9 cut(s) 194, 242, 291, 404, 1181, 1487, 2402, 2587, 2650
BceAI ACGGC 1 cut(s) 2634
BcgI CGANNNNNNTGC 2 cut(s) 1880, 1914
BciT130I CCWGG 3 cut(s) 135, 1266, 2182
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 5 cut(s) 517, 592, 1578, 2421, 2794
BfaI CTAG 2 cut(s) 1148, 2423
BfmI CTRYAG 5 cut(s) 928, 1239, 1932, 1972, 2368
BfuAI ACCTGC 4 cut(s) 1246, 1785, 1876, 2392
BisI GCNGC 6 cut(s) 308, 1391, 1935, 2293, 2323, 2340
BlsI GCNGC 6 cut(s) 309, 1392, 1936, 2294, 2324, 2341
Bme1390I CCNGG 3 cut(s) 135, 1266, 2182
Bme18I GGWCC 2 cut(s) 334, 1673
BmeT110I CYCGRG 1 cut(s) 545
BmgBI CACGTC 1 cut(s) 527
BmgT120I GGNCC 5 cut(s) 4, 19, 334, 1673, 2246
BmiI GGNNCC 5 cut(s) 82, 131, 335, 1674, 1675
BmrFI CCNGG 3 cut(s) 135, 1266, 2182
BmrI ACTGGG 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 505
BoxI GACNNNNGTC 1 cut(s) 2574
BpiI GAAGAC 2 cut(s) 1225, 2685
BpmI CTGGAG 1 cut(s) 1152
Bpu10I CCTNAGC 1 cut(s) 2108
BpuEI CTTGAG 5 cut(s) 474, 730, 1459, 1461, 1620
BsaBI GATNNNNATC 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 1999
BsaI GGTCTC 2 cut(s) 2421, 2794
BsaJI CCNNGG 6 cut(s) 133, 134, 1264, 1602, 2210, 2602
BsaWI WCCGGW 2 cut(s) 439, 1380
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 5 cut(s) 446, 1397, 1493, 1670, 2254
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 2 cut(s) 469, 500
Bse21I CCTNAGG 2 cut(s) 1488, 2486
Bse8I GATNNNNATC 1 cut(s) 363
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 3 cut(s) 135, 1266, 2182
BseDI CCNNGG 6 cut(s) 133, 134, 1264, 1602, 2210, 2602
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 5 cut(s) 446, 1397, 1493, 1670, 2254
BseMII CTCAG 5 cut(s) 788, 809, 1502, 1767, 2122
BseNI ACTGG 2 cut(s) 469, 500
BseRI GAGGAG 2 cut(s) 439, 692
BseXI GCAGC 4 cut(s) 1946, 2304, 2309, 2326
BseYI CCCAGC 1 cut(s) 935
BsgI GTGCAG 2 cut(s) 1450, 2311
Bsh1236I CGCG 1 cut(s) 2167
BshFI GGCC 7 cut(s) 5, 21, 252, 301, 1905, 2247, 2667
BshNI GGYRCC 2 cut(s) 80, 129
BsiHKAI GWGCWC 2 cut(s) 2109, 2733
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 3 cut(s) 22, 440, 1381
BslFI GGGAC 6 cut(s) 151, 347, 544, 1314, 1686, 2830
BslI CCNNNNNNNGG 5 cut(s) 446, 1397, 1493, 1670, 2254
BsmAI GTCTC 5 cut(s) 517, 592, 1578, 2421, 2794
BsmBI CGTCTC 1 cut(s) 517
BsmFI GGGAC 6 cut(s) 151, 347, 544, 1314, 1686, 2830
BsmI GAATGC 1 cut(s) 1828
BsnI GGCC 7 cut(s) 5, 21, 252, 301, 1905, 2247, 2667
Bso31I GGTCTC 2 cut(s) 2421, 2794
BsoBI CYCGRG 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 2109, 2733
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 7 cut(s) 181, 400, 895, 1763, 2008, 2283, 2506
BspANI GGCC 7 cut(s) 5, 21, 252, 301, 1905, 2247, 2667
BspCNI CTCAG 5 cut(s) 787, 808, 1501, 1766, 2121
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 2167
BspLI GGNNCC 5 cut(s) 82, 131, 335, 1674, 1675
BspMAI CTGCAG 2 cut(s) 1243, 1936
BspMI ACCTGC 4 cut(s) 1246, 1785, 1876, 2392
BspPI GGATC 2 cut(s) 2016, 2291
BspT107I GGYRCC 2 cut(s) 80, 129
BspTNI GGTCTC 2 cut(s) 2421, 2794
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 2 cut(s) 469, 500
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 6 cut(s) 133, 134, 1264, 1602, 2210, 2602
BssMI GATC 7 cut(s) 181, 400, 895, 1763, 2008, 2283, 2506
BssNI GRCGYC 1 cut(s) 1999
BssSI CACGAG 1 cut(s) 2100
BssT1I CCWWGG 3 cut(s) 1602, 2210, 2602
Bst2BI CACGAG 1 cut(s) 2100
Bst2UI CCWGG 3 cut(s) 135, 1266, 2182
Bst4CI ACNGT 6 cut(s) 44, 929, 1976, 2173, 2536, 2825
Bst6I CTCTTC 2 cut(s) 1952, 2424
BstACI GRCGYC 1 cut(s) 1999
BstAPI GCANNNNNTGC 2 cut(s) 2298, 2443
BstC8I GCNNGC 7 cut(s) 23, 151, 1828, 1903, 2344, 2365, 2729
BstDEI CTNAG 8 cut(s) 312, 774, 795, 1488, 1753, 2108, 2318, 2486
BstFNI CGCG 1 cut(s) 2167
BstHHI GCGC 1 cut(s) 1782
BstKTI GATC 7 cut(s) 184, 403, 898, 1766, 2011, 2286, 2509
BstMAI GTCTC 5 cut(s) 517, 592, 1578, 2421, 2794
BstMBI GATC 7 cut(s) 181, 400, 895, 1763, 2008, 2283, 2506
BstMWI GCNNNNNNNGC 5 cut(s) 307, 1646, 1832, 2298, 2443
BstNI CCWGG 3 cut(s) 135, 1266, 2182
BstNSI RCATGY 3 cut(s) 153, 1568, 2484
BstPAI GACNNNNGTC 1 cut(s) 2574
BstSCI CCNGG 3 cut(s) 133, 1264, 2180
BstSFI CTRYAG 5 cut(s) 928, 1239, 1932, 1972, 2368
BstUI CGCG 1 cut(s) 2167
BstV1I GCAGC 4 cut(s) 1946, 2304, 2309, 2326
BstV2I GAAGAC 2 cut(s) 1225, 2685
BstXI CCANNNNNNTGG 1 cut(s) 1230
Bsu36I CCTNAGG 2 cut(s) 1488, 2486
BsuRI GGCC 7 cut(s) 5, 21, 252, 301, 1905, 2247, 2667
BtrI CACGTC 1 cut(s) 527
BtsI GCAGTG 4 cut(s) 144, 717, 1189, 1697
BtsIMutI CAGTG 8 cut(s) 144, 717, 803, 1189, 1518, 1697, 2532, 2729
BveI ACCTGC 4 cut(s) 1246, 1785, 1876, 2392
Cac8I GCNNGC 7 cut(s) 23, 151, 1828, 1903, 2344, 2365, 2729
CfoI GCGC 1 cut(s) 1782
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 5 cut(s) 4, 19, 334, 1673, 2246
CseI GACGC 1 cut(s) 2007
Csp6I GTAC 5 cut(s) 857, 1136, 1384, 1977, 2222
CviAII CATG 7 cut(s) 150, 1502, 1565, 2336, 2360, 2447, 2481
CviQI GTAC 5 cut(s) 857, 1136, 1384, 1977, 2222
DdeI CTNAG 8 cut(s) 312, 774, 795, 1488, 1753, 2108, 2318, 2486
DpnI GATC 7 cut(s) 183, 402, 897, 1765, 2010, 2285, 2508
DpnII GATC 7 cut(s) 181, 400, 895, 1763, 2008, 2283, 2506
DraI TTTAAA 1 cut(s) 2071
DraIII CACNNNGTG 1 cut(s) 2538
EaeI YGGCCR 1 cut(s) 2665
Eam1104I CTCTTC 2 cut(s) 1952, 2424
EarI CTCTTC 2 cut(s) 1952, 2424
EciI GGCGGA 1 cut(s) 535
Eco130I CCWWGG 3 cut(s) 1602, 2210, 2602
Eco31I GGTCTC 2 cut(s) 2421, 2794
Eco32I GATATC 1 cut(s) 668
Eco47I GGWCC 2 cut(s) 334, 1673
Eco57I CTGAAG 1 cut(s) 1878
Eco81I CCTNAGG 2 cut(s) 1488, 2486
Eco88I CYCGRG 1 cut(s) 545
EcoO109I RGGNCCY 2 cut(s) 334, 1673
EcoRI GAATTC 1 cut(s) 1962
EcoRII CCWGG 3 cut(s) 133, 1264, 2180
EcoRV GATATC 1 cut(s) 668
EcoT14I CCWWGG 3 cut(s) 1602, 2210, 2602
EcoT22I ATGCAT 1 cut(s) 2448
ErhI CCWWGG 3 cut(s) 1602, 2210, 2602
Esp3I CGTCTC 1 cut(s) 517
FaeI CATG 7 cut(s) 153, 1505, 1568, 2339, 2363, 2450, 2484
FaqI GGGAC 6 cut(s) 151, 347, 544, 1314, 1686, 2830
FatI CATG 7 cut(s) 149, 1501, 1564, 2335, 2359, 2446, 2480
FauNDI CATATG 1 cut(s) 1651
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 1656
Fnu4HI GCNGC 6 cut(s) 308, 1391, 1935, 2293, 2323, 2340
Fsp4HI GCNGC 6 cut(s) 308, 1391, 1935, 2293, 2323, 2340
FspBI CTAG 2 cut(s) 1148, 2423
GlaI GCGC 1 cut(s) 1781
GluI GCNGC 6 cut(s) 308, 1391, 1935, 2293, 2323, 2340
GsaI CCCAGC 1 cut(s) 939
GsuI CTGGAG 1 cut(s) 1152
HaeIII GGCC 7 cut(s) 5, 21, 252, 301, 1905, 2247, 2667
HapII CCGG 3 cut(s) 22, 440, 1381
HgaI GACGC 1 cut(s) 2007
HhaI GCGC 1 cut(s) 1782
Hin1I GRCGYC 1 cut(s) 1999
Hin1II CATG 7 cut(s) 153, 1505, 1568, 2339, 2363, 2450, 2484
Hin6I GCGC 1 cut(s) 1780
HinP1I GCGC 1 cut(s) 1780
HincII GTYRAC 1 cut(s) 792
HindII GTYRAC 1 cut(s) 792
HpaII CCGG 3 cut(s) 22, 440, 1381
HphI GGTGA 8 cut(s) 106, 228, 652, 1782, 2564, 2639, 2704, 2824
Hpy166II GTNNAC 6 cut(s) 651, 792, 1288, 1499, 1657, 1979
Hpy188I TCNGA 6 cut(s) 418, 636, 1174, 1756, 1821, 1858
Hpy8I GTNNAC 6 cut(s) 651, 792, 1288, 1499, 1657, 1979
HpyCH4III ACNGT 6 cut(s) 44, 929, 1976, 2173, 2536, 2825
HpyCH4IV ACGT 3 cut(s) 526, 1017, 1065
HpyF10VI GCNNNNNNNGC 5 cut(s) 307, 1646, 1832, 2298, 2443
HpyF3I CTNAG 8 cut(s) 312, 774, 795, 1488, 1753, 2108, 2318, 2486
HpySE526I ACGT 3 cut(s) 526, 1017, 1065
Hsp92I GRCGYC 1 cut(s) 1999
Hsp92II CATG 7 cut(s) 153, 1505, 1568, 2339, 2363, 2450, 2484
HspAI GCGC 1 cut(s) 1780
KflI GGGWCCC 1 cut(s) 1673
Kpn2I TCCGGA 1 cut(s) 439
KroI GCCGGC 1 cut(s) 21
KroNI GCCGGC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 7 cut(s) 181, 400, 895, 1763, 2008, 2283, 2506
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 4 cut(s) 1946, 2304, 2309, 2326
MaeI CTAG 2 cut(s) 1148, 2423
MaeII ACGT 3 cut(s) 526, 1017, 1065
MalI GATC 7 cut(s) 183, 402, 897, 1765, 2010, 2285, 2508
MboI GATC 7 cut(s) 181, 400, 895, 1763, 2008, 2283, 2506
MfeI CAATTG 1 cut(s) 1025
MhlI GDGCHC 2 cut(s) 2109, 2733
MlsI TGGCCA 1 cut(s) 2667
MluNI TGGCCA 1 cut(s) 2667
MlyI GAGTC 7 cut(s) 342, 797, 836, 974, 1265, 1652, 2341
MmeI TCCRAC 3 cut(s) 786, 903, 1319
Mox20I TGGCCA 1 cut(s) 2667
Mph1103I ATGCAT 1 cut(s) 2448
MroI TCCGGA 1 cut(s) 439
MroNI GCCGGC 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 2667
MseI TTAA 7 cut(s) 30, 620, 825, 1422, 1769, 2070, 2558
MslI CAYNNNNRTG 2 cut(s) 372, 408
Msp20I TGGCCA 1 cut(s) 2667
MspA1I CMGCKG 2 cut(s) 739, 2295
MspI CCGG 3 cut(s) 22, 440, 1381
MspR9I CCNGG 3 cut(s) 135, 1266, 2182
MunI CAATTG 1 cut(s) 1025
Mva1269I GAATGC 1 cut(s) 1828
MvaI CCWGG 3 cut(s) 135, 1266, 2182
MvnI CGCG 1 cut(s) 2167
MwoI GCNNNNNNNGC 5 cut(s) 307, 1646, 1832, 2298, 2443
NaeI GCCGGC 1 cut(s) 23
NdeI CATATG 1 cut(s) 1651
NdeII GATC 7 cut(s) 181, 400, 895, 1763, 2008, 2283, 2506
NgoMIV GCCGGC 1 cut(s) 21
NlaIII CATG 7 cut(s) 153, 1505, 1568, 2339, 2363, 2450, 2484
NlaIV GGNNCC 5 cut(s) 82, 131, 335, 1674, 1675
NmuCI GTSAC 5 cut(s) 262, 1516, 2372, 2540, 2567
NsiI ATGCAT 1 cut(s) 2448
NspI RCATGY 3 cut(s) 153, 1568, 2484
PaeI GCATGC 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 545
PasI CCCWGGG 1 cut(s) 134
PciI ACATGT 1 cut(s) 1564
PctI GAATGC 1 cut(s) 1828
PdiI GCCGGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 8 cut(s) 257, 770, 820, 1377, 1457, 1537, 2161, 2810
PkrI GCNGC 6 cut(s) 309, 1392, 1936, 2294, 2324, 2341
PleI GAGTC 7 cut(s) 342, 796, 836, 974, 1264, 1652, 2340
PpsI GAGTC 7 cut(s) 342, 796, 836, 974, 1264, 1652, 2340
PpuMI RGGWCCY 2 cut(s) 334, 1673
PscI ACATGT 1 cut(s) 1564
PshAI GACNNNNGTC 1 cut(s) 2574
Psp1406I AACGTT 1 cut(s) 1065
Psp5II RGGWCCY 2 cut(s) 334, 1673
Psp6I CCWGG 3 cut(s) 133, 1264, 2180
PspFI CCCAGC 1 cut(s) 935
PspGI CCWGG 3 cut(s) 133, 1264, 2180
PspN4I GGNNCC 5 cut(s) 82, 131, 335, 1674, 1675
PspPI GGNCC 5 cut(s) 4, 19, 334, 1673, 2246
PspPPI RGGWCCY 2 cut(s) 334, 1673
PstI CTGCAG 2 cut(s) 1243, 1936
PvuII CAGCTG 1 cut(s) 2295
RsaI GTAC 5 cut(s) 858, 1137, 1385, 1978, 2223
RsaNI GTAC 5 cut(s) 857, 1136, 1384, 1977, 2222
RseI CAYNNNNRTG 2 cut(s) 372, 408
SaqAI TTAA 7 cut(s) 30, 620, 825, 1422, 1769, 2070, 2558
SatI GCNGC 6 cut(s) 308, 1391, 1935, 2293, 2323, 2340
Sau3AI GATC 7 cut(s) 181, 400, 895, 1763, 2008, 2283, 2506
Sau96I GGNCC 5 cut(s) 4, 19, 334, 1673, 2246
SchI GAGTC 7 cut(s) 342, 797, 836, 974, 1265, 1652, 2341
ScrFI CCNGG 3 cut(s) 135, 1266, 2182
SduI GDGCHC 2 cut(s) 2109, 2733
SfcI CTRYAG 5 cut(s) 928, 1239, 1932, 1972, 2368
Sfr274I CTCGAG 1 cut(s) 545
SinI GGWCC 2 cut(s) 334, 1673
SlaI CTCGAG 1 cut(s) 545
SmiMI CAYNNNNRTG 2 cut(s) 372, 408
SmlI CTYRAG 6 cut(s) 489, 545, 709, 1438, 1476, 1635
SmoI CTYRAG 6 cut(s) 489, 545, 709, 1438, 1476, 1635
SphI GCATGC 1 cut(s) 153
SspI AATATT 2 cut(s) 1628, 1926
SspMI CTAG 2 cut(s) 1148, 2423
StyD4I CCNGG 3 cut(s) 133, 1264, 2180
StyI CCWWGG 3 cut(s) 1602, 2210, 2602
TaaI ACNGT 6 cut(s) 44, 929, 1976, 2173, 2536, 2825
TaiI ACGT 3 cut(s) 529, 1020, 1068
TaqI TCGA 6 cut(s) 546, 616, 1451, 1890, 2503, 2509
TatI WGTACW 2 cut(s) 1976, 2221
TauI GCSGC 2 cut(s) 310, 1393
TfiI GAWTC 8 cut(s) 257, 770, 820, 1377, 1457, 1537, 2161, 2810
Tru1I TTAA 7 cut(s) 30, 620, 825, 1422, 1769, 2070, 2558
Tru9I TTAA 7 cut(s) 30, 620, 825, 1422, 1769, 2070, 2558
TscAI CASTG 8 cut(s) 151, 724, 803, 1189, 1525, 1704, 2539, 2729
TseFI GTSAC 5 cut(s) 262, 1516, 2372, 2540, 2567
TseI GCWGC 4 cut(s) 1934, 2292, 2322, 2339
Tsp45I GTSAC 5 cut(s) 262, 1516, 2372, 2540, 2567
TspGWI ACGGA 1 cut(s) 2010
TspRI CASTG 8 cut(s) 151, 724, 803, 1189, 1525, 1704, 2539, 2729
VpaK11BI GGWCC 2 cut(s) 334, 1673
XapI RAATTY 4 cut(s) 729, 1191, 1852, 1962
XbaI TCTAGA 2 cut(s) 1147, 2422
XceI RCATGY 3 cut(s) 153, 1568, 2484
XcmI CCANNNNNNNNNTGG 2 cut(s) 2398, 2628
XhoI CTCGAG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 1656
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 1148, 2423
Zsp2I ATGCAT 1 cut(s) 2448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.