Rorug02G0054400

ubiquitinyl hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001222
Physical Location & Seq
Reverse (-)
4166660 .. 4170790
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0054400.1

Sequence Viewer

Length: 4131 bp
ATGAAGCTCCTATACTGGAATGCCCGGGGAATTGCTAATGATGACACTCAGCGGGCTCTCTCGGACATGGTACGTATTCATCGTCCTCTTTTTGTTTGTCTTTCCGAACCGTTTATTCTGCTCGATAGTATCAACATGTCTTTTTGGAGATCTCTTGGCCTTGTTCCTATAACAACTAATAGCCGTGGACTTCAAGCACCAAATTTGTGGGTTTTGGGTCAGGAAGCACTCAAACCTACTGTAATATCTTCCACAGATCAACAGATCACCTTTTCTTGTTCACTGGATGGTTTACTTTGTGTTATTACTGCGGTCTATGCGAAGACTACCATTGTTGGGAGACGAATGCTTTGGCAGGATCTTTCTGTGATTAATACTTCCCAGCTTTTTGGTCGCCCATGGGTGGTTTTTGGGGATTTTAACTGCATTCTTGGTGCGCATGAGAAGCGGGGTGGTGGTCCTCCTAACTTAACTTCTTGCATGGACTTCCAGCAGATGTGTACTGTTTGTGGCTTAATTGATATTCCGACCAAGGGTCTTGCCTACACTTGGTCTAACCGTCGTATTGATGAGAAGTTGGATAGAGCTTTGGGGAATCTGGCGTGGTTGGAAGCTTGGCAGGTTATGGAGTGTTGCACATTAACAAAGTCCACTTCTGATCACTGTCCAATTTTGCTCTCATTCCAAAGATTTGCTCTCCCTTGTCATTCTCCTTTTAGGTTTCAGAATATGTGGTTGCAACACCCGAATTTCCTCCAGTTAATCAGGGGGTTTTGGACCACGCTGGAATTCCATGGTTGCCCGATGTTTATTTTAAGCTCCAAGCTGCGTGCCTTGAAGTTAATGCTTAAAAGCTGGAATAAAGTGCATTTTGGTAACATTCATGCAAGGGTGGAGGCTGCCAGGCAGGCTCTGGATGGTGTTCAATCTGAAATTTGTAATCTGGGTCCTTCTGATGAAAGGTTCAGCCGCGAAGATGAAGCACAAGCACTCTTTCAAGTGGAGCTTTCTTTGCAACACACCATGCTTCGAGATAAATCTCGGGTGAGGTGGCTCAAGGATGGTGATCGTAATACTGCATTTCTGCATAACTTGGTACGGATTCGTCGCTCGAATAAATCCATCACCTCTCTTTTTGATGGGAGGGCCGTTTTGCAAGATCATGATTCCATTGCCAGTTATATTGTTCAACACTATACAAACATGTTTACTAAAGACCAGGGCATCATTGATACAGGCCTTGTGGAAAGAACCATTCCCCATCTAGTTACTGCAGCAGACAATGAGATTCTTACTGCAATCCCTACAGATGAGGAGATTATGTTAGCAGTTCAGTCTATGGATGGTAGTAGCTCCCCTGGTCCTGATGGGTTTGGAGGTGGCTTCTTTAAATTCTGTTGGAATATAATTTCCAAGGATGTGATTGATGCTGTTAGAAGCTTCTTTGCAACTGGGTTCATTCTTCCCCACTTTAATTCCAACCTTATAACTTTGGTTTCGAAAGTTGTTGAAGCACAAGACATTAGTGACTATCGTCCGATTGCTCTGGCAAATTTCTCTTTCAAAATCATTACCAAAATTTTAGCTGATCGTCTACGTCCAATTGCTTCAAGGATTGTCTCCAAGAATCAGAGTGCTTTCATCAAGGGAAGATCAATTGCTGACCCTATTATCCTTACCTCTGAATGCATGAATCTCCTTGACCATCGGTGTAAGTATGGGAATATTGCCATTAAATTTGATATAGCAAAGGCATTTGACACAATTGATTGGCATTTTCTCTTAAAAGTTCTTAGTACCTTTGGGTTTGACTCGGTATTTGTGAGGTGGGTTCATTGCATTCTTCAGTCAGCACATCTCTCCATCCTAGTTAATGGCCAGTCTTGTGGGTTTTTCACTTGTTCAAGAGGAGTGCGCCAAGGCGATCCTTTATCACCAATCCTTTTTTGCCTTGCGGAAGAGGTGTTAAGCAGGGGTTTGTCCTTCCTTGTTTCTCAGAGAGAGATTGATTGTATTGCTGCTCCTGGTGCTTGCAATCCTCCTTCACATGTGCTATTTGCAGATGATGTAATGGTTTTTATGCAGGCTAGCCCCCTTGGCCTTAATGCCATTACCGAGTTCATAGAGGAATATGCAGCTAATTCTGGCCAGGTTGTGAATAAAAACAAGTCACTGCTATTCTTAGGGGCCTCAGCTCGTCCTCGGCAGAGTATCATTATTCAATCACTGGGCATACAGTTAGGATCTCTTCCTTTCAGCTATCTTGGAGTCCCCATCTTTCAAGGTTGTCCTACTAATGCATTTTTACGACCCATAACGGATAAGGTCCGTTGTAAACTCAGCTCCTGGAAGGGTAAGTTGTTATCTCAAGCTGCTAGATTACAACTTATTGATTCTGTAATACAGAGCTTACTCATCTATAGCTTTCATATCTATGCCTGGCCCCGCTCTCTCTTGAAAGTGGTTCAAAGGTGGATTCGTAACTTCTTTTGGAATGGGGACCCATTGAAAGATGGAGGAGCTTTGGTTTCTTGGGATCAAGTATGTCAACCTAAGGACAGAGGTGGTTTGAACCTAAAGAACCTTTTTGTGTTAAACCAAGCCTTGCTTCTTAAACGTGGGTGGGAGGTTGTTTCTAACGTTTCACCTTCAGCGAAGTTTCTACATGCCCGTTTTCTTTCGAATGGGTTACAACCTTGTACTTACTACAAAAAATCCTCAGTATGGCTTGGTCTAAAAAGAGTTTGGCGAGTTCTACTCTCCAAGCTTCGTTGGATAATTGGAGATGGTAAGTCGATAAGGTTGTGGAAAGATAATTGGATGGGTGACATCTTAGGTGAGGCTTTTCATTTTGATTCCCAAACTTTGGGGCAACTTGACAATAAAATCAGTGACTTCATTGTGCATGGAAGATGGGATTTGCCAGATATTTTCCTCCAGGCCTTTCCCGATGTAGCGGCTGCTCTCACCTCTCATACCCTTCCTTTCGAACCTATGAGGGACCAGGTTGTTTGGTCCGATACTTCATCGGGTGTTCCAACGGCTAAGGATGCGTATGGCACCTTGTCCCAATCGTTTCCCAAGTTACATTGGGGTTCGTTGATTTGGCATAAGGCAATACAACCACGGAAGAGCATTTGCACCTGGAAGATTCTTCACAGGAAGATTCTTACTGATGAGCGGCTACAAAGGAGGGGTGTGGCCCTTCCATCTAAATGCAGCTTTTGTGGGTCGGCTGGGGAATCATGGATGCACCTCTTTTGGAGCTGCATGGTTTCGAGGATGATTTGGAGGTGGTGTTTTAGCATGTTCAAGTTCCATTCCGTGCAACGACACTCTATACATCAACTCCTTTCATCAACCTTCATCTCTCCTCTCTCTCCATCAGTGAAATTGCTTTGGCGCATCACTCTTTGCAATCTTTTTTGGTGCTTTTGGTCAGAAAGGAACAAATTGAGACATGAGGGTGGCACTTTCAACCTCATCAGATTCATGCGCTTTTTCTTATTGTCCTTAAAAGAGTCAGCAGGTATGGCTTTTGTCCATTCTTCCCCAACTTCAACTTATCCTATTTTTAATATCTTATTACTTTCATCTTTGAGAGCAACCGCTCCTCGTTTCATAAAAGTGACCTGGACGCCTCCCATTCCCCCTTGGGTCAAGATTAACACCGACGGTTCTTTTCGAGATGCGAACAATGCTGGCTATGGTGGCATCGTTCGTGATGCTGAGGGTGCTTTTGTCCATGCTTTTGCTTCTAGGGTAAGAGTTCCTAGTGCCCTTGATGCTGAGGTTCTTGCTTTCCTGGAAGCAATTGGGGTGGCTAGGTCACGTAATTGGCGCCATTTGTGGATTGAGACGGACTCAGCGGTAGTGGTCAGATATTTTGCATCCCCATCTCTTGTCCCTTGGAGGCTGCGCATTGAGTGGCTAAACGGTATGGTTTTAGCAAGACAATTGCAGTTACGTGTCACTCACATCTTTCGGGAAGGGAATGCTGTGGCAGATGTGTTAGCTAACTACGGTGCATCACATGAAGGTACTCACAGATGGGATTCGTTGCCCCAGTTTTTGTCTTCTGCCTTTGGTCGAGACTTTGTTTCATGGCCGGCCTATAGATTTGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

1376

Amino Acids

155.76

Weight (kDa)

9.33

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 508 - 759 5.5e-33 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 1015 - 1097 1.4e-18 zinc-binding in reverse transcriptase
RVT_3 PF13456 1223 - 1341 4.3e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1487
Acc16I TGCGCA 2 cut(s) 438, 3920
Acc36I ACCTGC 2 cut(s) 610, 3518
AccB1I GGYRCC 2 cut(s) 3059, 3840
AccB7I CCANNNNNTGG 1 cut(s) 2866
AccBSI CCGCTC 3 cut(s) 2448, 3181, 3611
AccI GTMKAC 1 cut(s) 1594
AccII CGCG 1 cut(s) 972
AclI AACGTT 1 cut(s) 2640
AclWI GGATC 4 cut(s) 366, 1919, 2251, 2544
AcoI YGGCCR 3 cut(s) 1876, 2146, 4106
AcsI RAATTY 8 cut(s) 202, 748, 788, 933, 1391, 1552, 1578, 1736
AcuI CTGAAG 2 cut(s) 1829, 2634
AcyI GRCGYC 2 cut(s) 3638, 3841
AfaI GTAC 6 cut(s) 72, 502, 1098, 1798, 2701, 4042
AfiI CCNNNNNNNGG 6 cut(s) 336, 403, 533, 549, 2724, 2866
AflIII ACRYGT 4 cut(s) 135, 1203, 2047, 3967
AhdI GACNNNNNGTC 1 cut(s) 534
AjuI GAANNNNNNNTTGG 2 cut(s) 2592, 2624
Alw26I GTCTC 5 cut(s) 334, 1624, 3451, 3851, 4086
AlwI GGATC 4 cut(s) 366, 1919, 2251, 2544
AlwNI CAGNNNCTG 2 cut(s) 913, 2346
Ama87I CYCGRG 2 cut(s) 24, 1041
ApoI RAATTY 8 cut(s) 202, 748, 788, 933, 1391, 1552, 1578, 1736
ArsI GACNNNNNNTTYG 4 cut(s) 333, 365, 1802, 1834
AseI ATTAAT 1 cut(s) 372
AspLEI GCGC 6 cut(s) 439, 1917, 3405, 3498, 3843, 3921
AsuC2I CCSGG 2 cut(s) 25, 26
AsuHPI GGTGA 9 cut(s) 259, 1057, 1076, 1117, 1926, 2637, 2837, 2849, 2959
AsuII TTCGAA 3 cut(s) 1499, 2681, 2988
AsuNHI GCTAGC 1 cut(s) 2087
AvaI CYCGRG 2 cut(s) 24, 1041
AvaII GGWCC 8 cut(s) 458, 777, 947, 1361, 2326, 2500, 3001, 3015
AxyI CCTNAGG 1 cut(s) 2553
BaeGI GKGCMC 1 cut(s) 3781
BalI TGGCCA 2 cut(s) 1878, 2148
BanI GGYRCC 2 cut(s) 3059, 3840
BanII GRGCYC 1 cut(s) 58
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 329, 4068
BbvCI CCTCAGC 3 cut(s) 2191, 3729, 3789
BceAI ACGGC 3 cut(s) 168, 1133, 3057
BclI TGATCA 1 cut(s) 658
BcnI CCSGG 2 cut(s) 25, 26
BcoDI GTCTC 5 cut(s) 334, 1624, 3451, 3851, 4086
BfaI CTAG 7 cut(s) 1265, 1868, 2088, 2376, 3759, 3774, 3825
BfmI CTRYAG 4 cut(s) 1272, 1305, 2419, 4114
BfoI RGCGCY 1 cut(s) 3844
BfuAI ACCTGC 2 cut(s) 610, 3518
BglI GCCNNNNNGGC 2 cut(s) 908, 2097
BglII AGATCT 1 cut(s) 149
Bme18I GGWCC 8 cut(s) 458, 777, 947, 1361, 2326, 2500, 3001, 3015
BmeRI GACNNNNNGTC 1 cut(s) 534
BmeT110I CYCGRG 2 cut(s) 24, 1041
BmiI GGNNCC 8 cut(s) 948, 2188, 2444, 2501, 2502, 3002, 3061, 3842
BmrI ACTGGG 3 cut(s) 1461, 2237, 4060
BmtI GCTAGC 1 cut(s) 2091
BmuI ACTGGG 3 cut(s) 1461, 2237, 4060
BoxI GACNNNNGTC 1 cut(s) 1533
BpiI GAAGAC 2 cut(s) 329, 4068
BplI GAGNNNNNCTC 4 cut(s) 2742, 2774, 3848, 3880
BpmI CTGGAG 2 cut(s) 740, 2921
Bpu10I CCTNAGC 4 cut(s) 2191, 3045, 3729, 3789
Bpu14I TTCGAA 3 cut(s) 1499, 2681, 2988
BpuEI CTTGAG 2 cut(s) 1040, 2352
BpuMI CCSGG 2 cut(s) 25, 26
BsaAI YACGTR 3 cut(s) 74, 3833, 3968
BsaBI GATNNNNATC 1 cut(s) 1065
BsaHI GRCGYC 2 cut(s) 3638, 3841
BsaXI ACNNNNNCTCC 8 cut(s) 1307, 1337, 2511, 2541, 3283, 3313, 3333, 3363
Bsc4I CCNNNNNNNGG 6 cut(s) 336, 403, 533, 549, 2724, 2866
Bse118I RCCGGY 1 cut(s) 4108
Bse1I ACTGG 8 cut(s) 20, 288, 757, 1176, 1456, 1879, 2232, 4066
Bse21I CCTNAGG 1 cut(s) 2553
Bse3DI GCAATG 2 cut(s) 1170, 1834
Bse8I GATNNNNATC 1 cut(s) 1065
BseJI GATNNNNATC 1 cut(s) 1065
BseLI CCNNNNNNNGG 6 cut(s) 336, 403, 533, 549, 2724, 2866
BseMI GCAATG 2 cut(s) 1170, 1834
BseMII CTCAG 8 cut(s) 62, 2009, 2205, 2353, 2733, 3720, 3780, 3879
BseNI ACTGG 8 cut(s) 20, 288, 757, 1176, 1456, 1879, 2232, 4066
BseRI GAGGAG 5 cut(s) 1328, 1923, 2532, 3363, 3603
BseSI GKGCMC 1 cut(s) 3781
BseYI CCCAGC 2 cut(s) 381, 3236
Bsh1236I CGCG 1 cut(s) 972
BshNI GGYRCC 2 cut(s) 3059, 3840
BsiHKCI CYCGRG 2 cut(s) 24, 1041
BsiSI CCGG 2 cut(s) 25, 4109
BslFI GGGAC 5 cut(s) 2255, 2513, 3014, 3052, 3890
BslI CCNNNNNNNGG 6 cut(s) 336, 403, 533, 549, 2724, 2866
BsmAI GTCTC 5 cut(s) 334, 1624, 3451, 3851, 4086
BsmBI CGTCTC 2 cut(s) 334, 3851
BsmFI GGGAC 5 cut(s) 2255, 2513, 3014, 3052, 3890
BsmI GAATGC 6 cut(s) 25, 351, 426, 1691, 1839, 4000
BsoBI CYCGRG 2 cut(s) 24, 1041
Bsp119I TTCGAA 3 cut(s) 1499, 2681, 2988
Bsp1286I GDGCHC 2 cut(s) 58, 3781
Bsp19I CCATGG 2 cut(s) 398, 793
BspCNI CTCAG 8 cut(s) 61, 2008, 2204, 2352, 2732, 3721, 3781, 3878
BspFNI CGCG 1 cut(s) 972
BspHI TCATGA 1 cut(s) 1162
BspLI GGNNCC 8 cut(s) 948, 2188, 2444, 2501, 2502, 3002, 3061, 3842
BspMAI CTGCAG 1 cut(s) 1276
BspMI ACCTGC 2 cut(s) 610, 3518
BspOI GCTAGC 1 cut(s) 2091
BspPI GGATC 4 cut(s) 366, 1919, 2251, 2544
BspQI GCTCTTC 1 cut(s) 3125
BspT104I TTCGAA 3 cut(s) 1499, 2681, 2988
BspT107I GGYRCC 2 cut(s) 3059, 3840
BsrBI CCGCTC 3 cut(s) 2448, 3181, 3611
BsrDI GCAATG 2 cut(s) 1170, 1834
BsrFI RCCGGY 1 cut(s) 4108
BsrI ACTGG 8 cut(s) 20, 288, 757, 1176, 1456, 1879, 2232, 4066
BssAI RCCGGY 1 cut(s) 4108
BssNI GRCGYC 2 cut(s) 3638, 3841
BssT1I CCWWGG 8 cut(s) 398, 531, 793, 1413, 1918, 2095, 3653, 3908
Bst4CI ACNGT 9 cut(s) 111, 241, 505, 560, 665, 2238, 3677, 3938, 4025
Bst6I CTCTTC 3 cut(s) 1953, 2253, 3125
BstACI GRCGYC 2 cut(s) 3638, 3841
BstBAI YACGTR 3 cut(s) 74, 3833, 3968
BstBI TTCGAA 3 cut(s) 1499, 2681, 2988
BstC8I GCNNGC 8 cut(s) 54, 831, 909, 2032, 2085, 2089, 3703, 4110
BstDSI CCRYGG 4 cut(s) 184, 398, 793, 3125
BstFNI CGCG 1 cut(s) 972
BstH2I RGCGCY 1 cut(s) 3844
BstHHI GCGC 6 cut(s) 439, 1917, 3405, 3498, 3843, 3921
BstMAI GTCTC 5 cut(s) 334, 1624, 3451, 3851, 4086
BstNSI RCATGY 5 cut(s) 139, 1207, 2051, 2669, 3310
BstPAI GACNNNNGTC 1 cut(s) 1533
BstSFI CTRYAG 4 cut(s) 1272, 1305, 2419, 4114
BstSLI GKGCMC 1 cut(s) 3781
BstSNI TACGTA 1 cut(s) 74
BstUI CGCG 1 cut(s) 972
BstV2I GAAGAC 2 cut(s) 329, 4068
BstX2I RGATCY 3 cut(s) 149, 358, 2243
BstXI CCANNNNNNTGG 3 cut(s) 207, 389, 1886
BstYI RGATCY 3 cut(s) 149, 358, 2243
Bsu36I CCTNAGG 1 cut(s) 2553
BtgI CCRYGG 4 cut(s) 184, 398, 793, 3125
BtsI GCAGTG 1 cut(s) 2171
BtsIMutI CAGTG 6 cut(s) 281, 661, 2171, 2225, 2896, 3393
BveI ACCTGC 2 cut(s) 610, 3518
Cac8I GCNNGC 8 cut(s) 54, 831, 909, 2032, 2085, 2089, 3703, 4110
CaiI CAGNNNCTG 2 cut(s) 913, 2346
CciI TCATGA 1 cut(s) 1162
CfoI GCGC 6 cut(s) 439, 1917, 3405, 3498, 3843, 3921
Cfr10I RCCGGY 1 cut(s) 4108
Cfr9I CCCGGG 1 cut(s) 24
CseI GACGC 1 cut(s) 3646
CsiI ACCWGGT 1 cut(s) 3003
Csp6I GTAC 6 cut(s) 71, 501, 1097, 1797, 2700, 4041
CspCI CAANNNNNGTGG 2 cut(s) 3801, 3836
CviQI GTAC 6 cut(s) 71, 501, 1097, 1797, 2700, 4041
DinI GGCGCC 1 cut(s) 3842
DraI TTTAAA 1 cut(s) 1390
DriI GACNNNNNGTC 1 cut(s) 534
EaeI YGGCCR 3 cut(s) 1876, 2146, 4106
Eam1104I CTCTTC 3 cut(s) 1953, 2253, 3125
Eam1105I GACNNNNNGTC 1 cut(s) 534
EarI CTCTTC 3 cut(s) 1953, 2253, 3125
Eco105I TACGTA 1 cut(s) 74
Eco130I CCWWGG 8 cut(s) 398, 531, 793, 1413, 1918, 2095, 3653, 3908
Eco147I AGGCCT 2 cut(s) 1239, 2942
Eco24I GRGCYC 1 cut(s) 58
Eco47I GGWCC 8 cut(s) 458, 777, 947, 1361, 2326, 2500, 3001, 3015
Eco57I CTGAAG 2 cut(s) 1829, 2634
Eco81I CCTNAGG 1 cut(s) 2553
Eco88I CYCGRG 2 cut(s) 24, 1041
EcoO109I RGGNCCY 3 cut(s) 947, 2187, 2500
EcoRI GAATTC 1 cut(s) 788
EcoT14I CCWWGG 8 cut(s) 398, 531, 793, 1413, 1918, 2095, 3653, 3908
EcoT22I ATGCAT 2 cut(s) 1691, 2302
EcoT38I GRGCYC 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 3842
EheI GGCGCC 1 cut(s) 3842
ErhI CCWWGG 8 cut(s) 398, 531, 793, 1413, 1918, 2095, 3653, 3908
Esp3I CGTCTC 2 cut(s) 334, 3851
FalI AAGNNNNNCTT 4 cut(s) 990, 1022, 2592, 2624
FaqI GGGAC 5 cut(s) 2255, 2513, 3014, 3052, 3890
FauI CCCGC 3 cut(s) 45, 441, 2453
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 1 cut(s) 1594
FriOI GRGCYC 1 cut(s) 58
FseI GGCCGGCC 1 cut(s) 4112
FspAI RTGCGCAY 1 cut(s) 438
FspBI CTAG 7 cut(s) 1265, 1868, 2088, 2376, 3759, 3774, 3825
FspI TGCGCA 2 cut(s) 438, 3920
GlaI GCGC 6 cut(s) 438, 1916, 3404, 3497, 3842, 3920
GsaI CCCAGC 2 cut(s) 385, 3240
GsuI CTGGAG 2 cut(s) 740, 2921
HaeII RGCGCY 1 cut(s) 3844
HapII CCGG 2 cut(s) 25, 4109
HgaI GACGC 1 cut(s) 3646
HhaI GCGC 6 cut(s) 439, 1917, 3405, 3498, 3843, 3921
Hin1I GRCGYC 2 cut(s) 3638, 3841
Hin6I GCGC 6 cut(s) 437, 1915, 3403, 3496, 3841, 3919
HinP1I GCGC 6 cut(s) 437, 1915, 3403, 3496, 3841, 3919
HincII GTYRAC 1 cut(s) 2549
HindII GTYRAC 1 cut(s) 2549
HindIII AAGCTT 3 cut(s) 612, 1438, 2765
HpaII CCGG 2 cut(s) 25, 4109
HphI GGTGA 9 cut(s) 259, 1057, 1076, 1117, 1926, 2637, 2837, 2849, 2959
Hpy166II GTNNAC 9 cut(s) 188, 281, 293, 501, 651, 1209, 1595, 2336, 2549
Hpy8I GTNNAC 9 cut(s) 188, 281, 293, 501, 651, 1209, 1595, 2336, 2549
Hpy99I CGWCG 3 cut(s) 564, 1110, 3677
HpyCH4III ACNGT 9 cut(s) 111, 241, 505, 560, 665, 2238, 3677, 3938, 4025
HpyCH4IV ACGT 6 cut(s) 73, 1597, 2617, 2640, 3832, 3967
HpySE526I ACGT 6 cut(s) 73, 1597, 2617, 2640, 3832, 3967
Hsp92I GRCGYC 2 cut(s) 3638, 3841
HspAI GCGC 6 cut(s) 437, 1915, 3403, 3496, 3841, 3919
KasI GGCGCC 1 cut(s) 3840
KflI GGGWCCC 1 cut(s) 2500
KroI GCCGGC 1 cut(s) 4108
KroNI GCCGGC 1 cut(s) 4110
Ksp22I TGATCA 1 cut(s) 658
LguI GCTCTTC 1 cut(s) 3125
LmnI GCTCC 9 cut(s) 12, 824, 1003, 1358, 2026, 2348, 2519, 3264, 3616
MabI ACCWGGT 1 cut(s) 3003
MaeI CTAG 7 cut(s) 1265, 1868, 2088, 2376, 3759, 3774, 3825
MaeII ACGT 6 cut(s) 73, 1597, 2617, 2640, 3832, 3967
MbiI CCGCTC 3 cut(s) 2448, 3181, 3611
MfeI CAATTG 5 cut(s) 1602, 1656, 1764, 3813, 3956
MflI RGATCY 3 cut(s) 149, 358, 2243
MhlI GDGCHC 2 cut(s) 58, 3781
MlsI TGGCCA 2 cut(s) 1878, 2148
MluNI TGGCCA 2 cut(s) 1878, 2148
Mly113I GGCGCC 1 cut(s) 3841
MlyI GAGTC 4 cut(s) 1805, 2277, 3530, 3857
MmeI TCCRAC 7 cut(s) 551, 558, 588, 1379, 1503, 2753, 3062
Mox20I TGGCCA 2 cut(s) 1878, 2148
Mph1103I ATGCAT 2 cut(s) 1691, 2302
MroNI GCCGGC 1 cut(s) 4108
MscI TGGCCA 2 cut(s) 1878, 2148
MslI CAYNNNNRTG 4 cut(s) 2433, 3214, 3465, 3626
Msp20I TGGCCA 2 cut(s) 1878, 2148
MspA1I CMGCKG 2 cut(s) 52, 3869
MspI CCGG 2 cut(s) 25, 4109
MunI CAATTG 5 cut(s) 1602, 1656, 1764, 3813, 3956
Mva1269I GAATGC 6 cut(s) 25, 351, 426, 1691, 1839, 4000
MvnI CGCG 1 cut(s) 972
NaeI GCCGGC 1 cut(s) 4110
NarI GGCGCC 1 cut(s) 3841
NciI CCSGG 2 cut(s) 25, 26
NcoI CCATGG 2 cut(s) 398, 793
NgoMIV GCCGGC 1 cut(s) 4108
NheI GCTAGC 1 cut(s) 2087
NlaIV GGNNCC 8 cut(s) 948, 2188, 2444, 2501, 2502, 3002, 3061, 3842
NmeAIII GCCGAG 1 cut(s) 2182
NmuCI GTSAC 7 cut(s) 1526, 2169, 2825, 2891, 3628, 3828, 3970
NsbI TGCGCA 2 cut(s) 438, 3920
NsiI ATGCAT 2 cut(s) 1691, 2302
NspI RCATGY 5 cut(s) 139, 1207, 2051, 2669, 3310
NspV TTCGAA 3 cut(s) 1499, 2681, 2988
PagI TCATGA 1 cut(s) 1162
PceI AGGCCT 2 cut(s) 1239, 2942
PciI ACATGT 3 cut(s) 135, 1203, 2047
PciSI GCTCTTC 1 cut(s) 3125
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PctI GAATGC 6 cut(s) 25, 351, 426, 1691, 1839, 4000
PdiI GCCGGC 1 cut(s) 4110
PflMI CCANNNNNTGG 1 cut(s) 2866
PfoI TCCNGGA 2 cut(s) 2345, 3804
PleI GAGTC 4 cut(s) 1805, 2276, 3529, 3857
PluTI GGCGCC 1 cut(s) 3844
PpsI GAGTC 4 cut(s) 1805, 2276, 3529, 3857
Ppu21I YACGTR 3 cut(s) 74, 3833, 3968
PpuMI RGGWCCY 2 cut(s) 947, 2500
PscI ACATGT 3 cut(s) 135, 1203, 2047
PshAI GACNNNNGTC 1 cut(s) 1533
PshBI ATTAAT 1 cut(s) 372
PsiI TTATAA 1 cut(s) 1487
Psp1406I AACGTT 1 cut(s) 2640
Psp5II RGGWCCY 2 cut(s) 947, 2500
PspFI CCCAGC 2 cut(s) 381, 3236
PspN4I GGNNCC 8 cut(s) 948, 2188, 2444, 2501, 2502, 3002, 3061, 3842
PspPPI RGGWCCY 2 cut(s) 947, 2500
PstI CTGCAG 1 cut(s) 1276
PstNI CAGNNNCTG 2 cut(s) 913, 2346
PsuI RGATCY 3 cut(s) 149, 358, 2243
RigI GGCCGGCC 1 cut(s) 4112
RsaI GTAC 6 cut(s) 72, 502, 1098, 1798, 2701, 4042
RsaNI GTAC 6 cut(s) 71, 501, 1097, 1797, 2700, 4041
RseI CAYNNNNRTG 4 cut(s) 2433, 3214, 3465, 3626
SapI GCTCTTC 1 cut(s) 3125
SchI GAGTC 4 cut(s) 1805, 2277, 3530, 3857
SduI GDGCHC 2 cut(s) 58, 3781
SexAI ACCWGGT 1 cut(s) 3003
SfcI CTRYAG 4 cut(s) 1272, 1305, 2419, 4114
SfoI GGCGCC 1 cut(s) 3842
SfuI TTCGAA 3 cut(s) 1499, 2681, 2988
SinI GGWCC 8 cut(s) 458, 777, 947, 1361, 2326, 2500, 3001, 3015
SmaI CCCGGG 1 cut(s) 26
SmiMI CAYNNNNRTG 4 cut(s) 2433, 3214, 3465, 3626
SmlI CTYRAG 2 cut(s) 1055, 2367
SmoI CTYRAG 2 cut(s) 1055, 2367
SnaBI TACGTA 1 cut(s) 74
SseBI AGGCCT 2 cut(s) 1239, 2942
SspDI GGCGCC 1 cut(s) 3840
SspI AATATT 1 cut(s) 1726
SspMI CTAG 7 cut(s) 1265, 1868, 2088, 2376, 3759, 3774, 3825
StuI AGGCCT 2 cut(s) 1239, 2942
StyI CCWWGG 8 cut(s) 398, 531, 793, 1413, 1918, 2095, 3653, 3908
TaaI ACNGT 9 cut(s) 111, 241, 505, 560, 665, 2238, 3677, 3938, 4025
TaiI ACGT 6 cut(s) 76, 1600, 2620, 2643, 3835, 3970
TatI WGTACW 2 cut(s) 500, 2699
TauI GCSGC 3 cut(s) 972, 2960, 3184
TscAI CASTG 6 cut(s) 288, 668, 2178, 2232, 2896, 3393
TseFI GTSAC 7 cut(s) 1526, 2169, 2825, 2891, 3628, 3828, 3970
Tsp45I GTSAC 7 cut(s) 1526, 2169, 2825, 2891, 3628, 3828, 3970
TspGWI ACGGA 6 cut(s) 1114, 2318, 2333, 3142, 3313, 3875
TspMI CCCGGG 1 cut(s) 24
TspRI CASTG 6 cut(s) 288, 668, 2178, 2232, 2896, 3393
Van91I CCANNNNNTGG 1 cut(s) 2866
VpaK11BI GGWCC 8 cut(s) 458, 777, 947, 1361, 2326, 2500, 3001, 3015
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 8 cut(s) 202, 748, 788, 933, 1391, 1552, 1578, 1736
XceI RCATGY 5 cut(s) 139, 1207, 2051, 2669, 3310
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XmaI CCCGGG 1 cut(s) 24
XmiI GTMKAC 1 cut(s) 1594
XspI CTAG 7 cut(s) 1265, 1868, 2088, 2376, 3759, 3774, 3825
Zsp2I ATGCAT 2 cut(s) 1691, 2302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.