Rh6BG047500

ubiquitinyl hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001222
Physical Location & Seq
Reverse (-)
7855275 .. 7861422
6148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG047500.1

Sequence Viewer

Length: 1938 bp
ATGGAAGGGTTTTGGGGTGGTGAAAGGAAGAATCACAGAGTGAAGCATCTTGCATTCAAACAGAGGAGTAGAGGTTGTGTTAGCATGTCATCCTTGAGCAAATTTGTGGAGTTTGACAATGCAAATGGTGAAAAGGAGGAGAGTGCTACCACTCGGAAGTTGAAAAGGCGAAAGCCGTCTGCATCCTCCTGTGGTTGTAGAACTGATAGTGATGGTAGTCAGCAAACTCGTGTGCTGAGGTCAAGAAATCGAGTGCAGGAAGTGGTTACTCCTACTTCCACACACCATCATCCTTGTACAGTCTTATCTTGGCTGATTGACAACAATGTGGTTTTGCCAAGGGAGAAATTGCGTTATTGTAGCGCAAGGGGGAGTCATGCTGTGGCAGAAGGAAAAGTATGTAGAGAGGGGATTGAATGCAACTGTTGCCAACAGGTTTTTACACTTGGTGGCTTTGACAGTCATGCTGGCTGCAGTAACTACAGACCTGCAGCCAATATTTTTCTGCAAGATGGAAAGTCTCTCCTAGATTGCCAGATGCAAATTATGACTGAAAGAGAGAAGAAGAGATGCGGACTAGAACCACATGATGTGATGAAGGGTAATTTGCCTCGAATAGAAAATGATAGCTTTTGTACAGTCTGTCAGGATGGTGGTGATTTGATATTATGTGATCGATGTCCATCAGCATTTCACAAGAGTTGCATTGGTTCCGAGGATGTTCCAGATGGTGACTGGTTCTGTCCAGCTTGCTGTTGTGTAATTTGTGGCTGCAGCATAAATCCTACAATCCATTACCATACCTGTGGTCAATGTGAACGTAAATATCACACCAGCTGCTTGAGGAAAAGAAGCATAGATAATTTAGAGATGAATTCAAAAGGAAATTGGTTCTGCAGCAACGACTGTAAAAAGATATTTTTAGGCCTCCACGAGCGTTTAGGGAAACAAATTTCAGTGGGTGTTGACAATCTAACTTGGTCACTTTGGAAGTCCGTGAAATCTGATAGTGATAATCCTAATGAACCTGATAATGATGCTGCAACGGAGACTTATACCAAACTCAATCTTGCCCTTCAAGTGATGCAGGAGTGTTTTAAGCATTTTAAGAAACCTCAAACTGGGGGATATCTTGCAGAAGATATCATCTTCAGCAGAGGGTCACATCTTGATGGCATGAACTTTCGGGGGTTTTACACTGTGCTTTTGGAGAAAAATGACGCTTTAATAACTGTAGCTACTGTAAGGATCTATGGAGCAAAGGTGGCTGAAGTACCTCTTATTGGTACCAGATTGCAGCATCGTCAAAGTGGAATGTGTCGTGTATTGATGCATTTAATTGAAAAGATGCTTATGGACTTGGGTGTGGAGAGATTGGTTTTGCCCATTGTCCCCAGATCAGTAGGAAAATGGAATACTTCATTTGGATTTTCAGATATTAAAGGTTCTGATAGGCTGCAGTTTCTGGATTATAGATTCATGCATTTTGAGGATACCATTATGTGTCAGAAATGCTTAAAAAGGACATATCTAGCTGAACCATGCCCATCAAAAGGAATTTCGCTTGATGTTGCTGGAAGTGTTGATGATATTGATTTTGATGGGTCCAGCGTCCATAAAGTCTCATTCACATGGAAAATTTACAATTTCTCTAGCCGTGGGAAGGAATACTCTGAGACTTTCCTCACTGGTGATTTGAGATGGCGGATGCTTATGTATCCAAAGGGCAACACTGTTGATAACTTGTCGGTATATTTGGATGTTCGAGGTGCCTCAGAATTGCCACTTGGGTGGTCTAGATGTGTGAAATTCAGCTTGACTGTGGTTAATCAACTTCAACACAGCCAGTCAATAGCAAGGGGTACTCTGTTTCCTTTTTGTTTTCTGTATTCCACATATATGCTTCTGTTCTTTTTCTGTTGTCTTGATATTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

645

Amino Acids

72.98

Weight (kDa)

8.47

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 132 - 181 4.6e-18 Tify domain binding domain
PHD PF00628 212 - 251 2.3e-08 PHD-finger
IDM1_C PF23209 366 - 504 2.5e-46 Increased DNA methylation 1, C-terminal domain
MATH_2 PF22486 542 - 618 2.4e-15 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 496
Acc65I GGTACC 1 cut(s) 1286
AccB1I GGYRCC 2 cut(s) 1286, 1769
AciI CCGC 2 cut(s) 573, 1705
AclWI GGATC 1 cut(s) 1256
AcsI RAATTY 6 cut(s) 101, 874, 951, 1557, 1638, 1808
AcuI CTGAAG 2 cut(s) 1135, 1290
AdeI CACNNNGTG 2 cut(s) 40, 449
AfaI GTAC 5 cut(s) 298, 637, 1275, 1288, 1864
AfiI CCNNNNNNNGG 4 cut(s) 1121, 1283, 1553, 1663
AgsI TTSAA 7 cut(s) 58, 163, 416, 879, 1079, 1343, 1838
AjuI GAANNNNNNNTTGG 2 cut(s) 1770, 1802
AleI CACNNNNGTG 1 cut(s) 1789
AluBI AGCT 6 cut(s) 630, 749, 837, 1238, 1535, 1815
AluI AGCT 6 cut(s) 630, 749, 837, 1238, 1535, 1815
Alw26I GTCTC 4 cut(s) 525, 1043, 1627, 1670
AlwI GGATC 1 cut(s) 1256
AlwNI CAGNNNCTG 1 cut(s) 1465
AoxI GGCC 1 cut(s) 925
ApeKI GCWGC 9 cut(s) 471, 491, 771, 774, 837, 897, 1040, 1297, 1456
ApoI RAATTY 6 cut(s) 101, 874, 951, 1557, 1638, 1808
Asp718I GGTACC 1 cut(s) 1286
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 1605
AsuHPI GGTGA 5 cut(s) 32, 140, 668, 743, 1703
AvaII GGWCC 1 cut(s) 1605
BanI GGYRCC 2 cut(s) 1286, 1769
BauI CACGAG 2 cut(s) 228, 932
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 9 cut(s) 458, 503, 758, 786, 824, 909, 1027, 1309, 1443
BceAI ACGGC 2 cut(s) 160, 1641
BciVI GTATCC 2 cut(s) 1486, 1728
BcoDI GTCTC 4 cut(s) 525, 1043, 1627, 1670
BfaI CTAG 5 cut(s) 527, 578, 1532, 1653, 1797
BfmI CTRYAG 7 cut(s) 472, 481, 489, 772, 895, 1233, 1457
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 2 cut(s) 1486, 1728
BisI GCNGC 9 cut(s) 472, 492, 772, 775, 838, 898, 1041, 1298, 1457
BlsI GCNGC 9 cut(s) 473, 493, 773, 776, 839, 899, 1042, 1299, 1458
Bme18I GGWCC 1 cut(s) 1605
BmgT120I GGNCC 1 cut(s) 1605
BmiI GGNNCC 4 cut(s) 712, 1288, 1606, 1771
BmrI ACTGGG 1 cut(s) 1131
BmuI ACTGGG 1 cut(s) 1131
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 2 cut(s) 115, 862
Bsa29I ATCGAT 1 cut(s) 676
BsaBI GATNNNNATC 1 cut(s) 682
BsaJI CCNNGG 3 cut(s) 338, 714, 1657
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 1248, 1278
Bsc4I CCNNNNNNNGG 4 cut(s) 1121, 1283, 1553, 1663
Bse1I ACTGG 4 cut(s) 740, 1126, 1693, 1846
Bse8I GATNNNNATC 1 cut(s) 682
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 3 cut(s) 338, 714, 1657
BseGI GGATG 7 cut(s) 89, 182, 289, 655, 724, 1713, 1765
BseJI GATNNNNATC 1 cut(s) 682
BseLI CCNNNNNNNGG 4 cut(s) 1121, 1283, 1553, 1663
BseMII CTCAG 3 cut(s) 227, 1665, 1788
BseNI ACTGG 4 cut(s) 740, 1126, 1693, 1846
BseRI GAGGAG 2 cut(s) 79, 152
BseXI GCAGC 9 cut(s) 458, 503, 758, 786, 824, 909, 1027, 1309, 1443
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 927
BshNI GGYRCC 2 cut(s) 1286, 1769
BshVI ATCGAT 1 cut(s) 676
BslFI GGGAC 1 cut(s) 1376
BslI CCNNNNNNNGG 4 cut(s) 1121, 1283, 1553, 1663
BsmAI GTCTC 4 cut(s) 525, 1043, 1627, 1670
BsmFI GGGAC 1 cut(s) 1376
BsmI GAATGC 2 cut(s) 53, 422
BsnI GGCC 1 cut(s) 927
Bsp1407I TGTACA 2 cut(s) 296, 635
Bsp143I GATC 3 cut(s) 673, 1248, 1397
BspACI CCGC 2 cut(s) 573, 1705
BspANI GGCC 1 cut(s) 927
BspCNI CTCAG 3 cut(s) 228, 1666, 1787
BspDI ATCGAT 1 cut(s) 676
BspLI GGNNCC 4 cut(s) 712, 1288, 1606, 1771
BspMAI CTGCAG 5 cut(s) 476, 493, 776, 899, 1461
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 1 cut(s) 1256
BspT107I GGYRCC 2 cut(s) 1286, 1769
BsrGI TGTACA 2 cut(s) 296, 635
BsrI ACTGG 4 cut(s) 740, 1126, 1693, 1846
BssECI CCNNGG 3 cut(s) 338, 714, 1657
BssMI GATC 3 cut(s) 673, 1248, 1397
BssSI CACGAG 2 cut(s) 228, 932
BssT1I CCWWGG 1 cut(s) 338
Bst2BI CACGAG 2 cut(s) 228, 932
Bst6I CTCTTC 1 cut(s) 560
BstAPI GCANNNNNTGC 1 cut(s) 426
BstAUI TGTACA 2 cut(s) 296, 635
BstC8I GCNNGC 2 cut(s) 469, 751
BstDEI CTNAG 3 cut(s) 236, 1674, 1774
BstDSI CCRYGG 1 cut(s) 1657
BstF5I GGATG 7 cut(s) 89, 182, 289, 655, 724, 1713, 1765
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 3 cut(s) 676, 1251, 1400
BstMAI GTCTC 4 cut(s) 525, 1043, 1627, 1670
BstMBI GATC 3 cut(s) 673, 1248, 1397
BstMWI GCNNNNNNNGC 2 cut(s) 426, 1265
BstNSI RCATGY 1 cut(s) 88
BstSFI CTRYAG 7 cut(s) 472, 481, 489, 772, 895, 1233, 1457
BstV1I GCAGC 9 cut(s) 458, 503, 758, 786, 824, 909, 1027, 1309, 1443
BstX2I RGATCY 1 cut(s) 1248
BstXI CCANNNNNNTGG 2 cut(s) 806, 1791
BstYI RGATCY 1 cut(s) 1248
Bsu15I ATCGAT 1 cut(s) 676
BsuI GTATCC 2 cut(s) 1486, 1728
BsuRI GGCC 1 cut(s) 927
BsuTUI ATCGAT 1 cut(s) 676
BtgI CCRYGG 1 cut(s) 1657
BtsCI GGATG 7 cut(s) 89, 182, 289, 655, 724, 1713, 1765
BtsIMutI CAGTG 4 cut(s) 963, 1197, 1686, 1731
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 2 cut(s) 469, 751
CaiI CAGNNNCTG 1 cut(s) 1465
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 1605
ClaI ATCGAT 1 cut(s) 676
CseI GACGC 2 cut(s) 1229, 1600
Csp6I GTAC 5 cut(s) 297, 636, 1274, 1287, 1863
CviAII CATG 9 cut(s) 85, 377, 464, 587, 1177, 1480, 1542, 1632, 1935
CviQI GTAC 5 cut(s) 297, 636, 1274, 1287, 1863
DdeI CTNAG 3 cut(s) 236, 1674, 1774
DpnI GATC 3 cut(s) 675, 1250, 1399
DpnII GATC 3 cut(s) 673, 1248, 1397
DraIII CACNNNGTG 2 cut(s) 40, 449
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
EciI GGCGGA 1 cut(s) 1720
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 927
Eco32I GATATC 2 cut(s) 1130, 1144
Eco47I GGWCC 1 cut(s) 1605
Eco57I CTGAAG 2 cut(s) 1135, 1290
EcoRI GAATTC 1 cut(s) 874
EcoRV GATATC 2 cut(s) 1130, 1144
EcoT14I CCWWGG 1 cut(s) 338
EcoT22I ATGCAT 2 cut(s) 1335, 1485
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 9 cut(s) 88, 380, 467, 590, 1180, 1483, 1545, 1635, 1938
FalI AAGNNNNNCTT 2 cut(s) 1263, 1295
FaqI GGGAC 1 cut(s) 1376
FatI CATG 9 cut(s) 84, 376, 463, 586, 1176, 1479, 1541, 1631, 1934
Fnu4HI GCNGC 9 cut(s) 472, 492, 772, 775, 838, 898, 1041, 1298, 1457
FokI GGATG 7 cut(s) 76, 169, 276, 662, 731, 1720, 1772
Fsp4HI GCNGC 9 cut(s) 472, 492, 772, 775, 838, 898, 1041, 1298, 1457
FspBI CTAG 5 cut(s) 527, 578, 1532, 1653, 1797
GlaI GCGC 1 cut(s) 364
GluI GCNGC 9 cut(s) 472, 492, 772, 775, 838, 898, 1041, 1298, 1457
HaeIII GGCC 1 cut(s) 927
HgaI GACGC 2 cut(s) 1229, 1600
HhaI GCGC 1 cut(s) 365
Hin1II CATG 9 cut(s) 88, 380, 467, 590, 1180, 1483, 1545, 1635, 1938
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HinfI GANTC 3 cut(s) 31, 373, 1476
HphI GGTGA 5 cut(s) 32, 140, 668, 743, 1703
Hpy166II GTNNAC 2 cut(s) 818, 967
Hpy188I TCNGA 8 cut(s) 156, 715, 1006, 1435, 1450, 1509, 1675, 1777
Hpy188III TCNNGA 7 cut(s) 243, 647, 725, 1169, 1466, 1797, 1925
Hpy8I GTNNAC 2 cut(s) 818, 967
HpyAV CCTTC 4 cut(s) 383, 592, 1085, 1657
HpyCH4IV ACGT 1 cut(s) 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 426, 1265
HpyF3I CTNAG 3 cut(s) 236, 1674, 1774
HpySE526I ACGT 1 cut(s) 820
Hsp92II CATG 9 cut(s) 88, 380, 467, 590, 1180, 1483, 1545, 1635, 1938
HspAI GCGC 1 cut(s) 363
KpnI GGTACC 1 cut(s) 1290
Kzo9I GATC 3 cut(s) 673, 1248, 1397
LmnI GCTCC 1 cut(s) 1256
Lsp1109I GCAGC 9 cut(s) 458, 503, 758, 786, 824, 909, 1027, 1309, 1443
MaeI CTAG 5 cut(s) 527, 578, 1532, 1653, 1797
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 5 cut(s) 265, 476, 731, 981, 1161
MalI GATC 3 cut(s) 675, 1250, 1399
MboI GATC 3 cut(s) 673, 1248, 1397
MboII GAAGA 5 cut(s) 40, 574, 577, 1141, 1151
MflI RGATCY 1 cut(s) 1248
MlyI GAGTC 1 cut(s) 382
Mph1103I ATGCAT 2 cut(s) 1335, 1485
MseI TTAA 7 cut(s) 1098, 1107, 1226, 1337, 1440, 1517, 1827
MslI CAYNNNNRTG 5 cut(s) 804, 1170, 1630, 1789, 1898
MspA1I CMGCKG 1 cut(s) 837
Mva1269I GAATGC 2 cut(s) 53, 422
MwoI GCNNNNNNNGC 2 cut(s) 426, 1265
NdeII GATC 3 cut(s) 673, 1248, 1397
NlaIII CATG 9 cut(s) 88, 380, 467, 590, 1180, 1483, 1545, 1635, 1938
NlaIV GGNNCC 4 cut(s) 712, 1288, 1606, 1771
NmuCI GTSAC 3 cut(s) 731, 981, 1161
NsiI ATGCAT 2 cut(s) 1335, 1485
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 1789
PceI AGGCCT 1 cut(s) 927
PctI GAATGC 2 cut(s) 53, 422
PfeI GAWTC 2 cut(s) 31, 1476
PkrI GCNGC 9 cut(s) 473, 493, 773, 776, 839, 899, 1042, 1299, 1458
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
PspN4I GGNNCC 4 cut(s) 712, 1288, 1606, 1771
PspPI GGNCC 1 cut(s) 1605
PstI CTGCAG 5 cut(s) 476, 493, 776, 899, 1461
PstNI CAGNNNCTG 1 cut(s) 1465
PsuI RGATCY 1 cut(s) 1248
PvuII CAGCTG 1 cut(s) 837
RsaI GTAC 5 cut(s) 298, 637, 1275, 1288, 1864
RsaNI GTAC 5 cut(s) 297, 636, 1274, 1287, 1863
RseI CAYNNNNRTG 5 cut(s) 804, 1170, 1630, 1789, 1898
SaqAI TTAA 7 cut(s) 1098, 1107, 1226, 1337, 1440, 1517, 1827
SatI GCNGC 9 cut(s) 472, 492, 772, 775, 838, 898, 1041, 1298, 1457
Sau3AI GATC 3 cut(s) 673, 1248, 1397
Sau96I GGNCC 1 cut(s) 1605
SchI GAGTC 1 cut(s) 382
SfcI CTRYAG 7 cut(s) 472, 481, 489, 772, 895, 1233, 1457
SinI GGWCC 1 cut(s) 1605
SmiMI CAYNNNNRTG 5 cut(s) 804, 1170, 1630, 1789, 1898
SmlI CTYRAG 2 cut(s) 94, 841
SmoI CTYRAG 2 cut(s) 94, 841
SseBI AGGCCT 1 cut(s) 927
SsiI CCGC 2 cut(s) 573, 1705
SspI AATATT 1 cut(s) 499
SspMI CTAG 5 cut(s) 527, 578, 1532, 1653, 1797
StuI AGGCCT 1 cut(s) 927
StyI CCWWGG 1 cut(s) 338
TaiI ACGT 1 cut(s) 823
TaqI TCGA 4 cut(s) 250, 613, 676, 1765
TatI WGTACW 2 cut(s) 296, 635
TfiI GAWTC 2 cut(s) 31, 1476
Tru1I TTAA 7 cut(s) 1098, 1107, 1226, 1337, 1440, 1517, 1827
Tru9I TTAA 7 cut(s) 1098, 1107, 1226, 1337, 1440, 1517, 1827
TscAI CASTG 4 cut(s) 963, 1204, 1693, 1738
TseFI GTSAC 3 cut(s) 731, 981, 1161
TseI GCWGC 9 cut(s) 471, 491, 771, 774, 837, 897, 1040, 1297, 1456
Tsp45I GTSAC 3 cut(s) 731, 981, 1161
TspDTI ATGAA 6 cut(s) 611, 887, 1038, 1193, 1410, 1468
TspGWI ACGGA 2 cut(s) 985, 1061
TspRI CASTG 4 cut(s) 963, 1204, 1693, 1738
VpaK11BI GGWCC 1 cut(s) 1605
XapI RAATTY 6 cut(s) 101, 874, 951, 1557, 1638, 1808
XbaI TCTAGA 1 cut(s) 1796
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XspI CTAG 5 cut(s) 527, 578, 1532, 1653, 1797
Zsp2I ATGCAT 2 cut(s) 1335, 1485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.