FvH4_2g03602

ubiquitinyl hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001222
Physical Location & Seq
Reverse (-)
2933957 .. 2934827
871 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03602.t1

Sequence Viewer

Length: 696 bp
ATGTTACGGTGGTGGAGCAATATTTTGGAGTTTGACAATGCGAATAGCGAAAAGGAACACAATGCTAACCCTCCAAAGCTGAAAAGGCGAAAGACATCTGCATCATCTTCTGGATACAGTACTGGTATGAATGGTACTGGCCGTACTGCGCTAACTCGTGTGCTGAGGTCACAAAAACGAGTGCAGGAAAAGGTCACTCCTACTTCCACACACGGCCATCCTTGTACAATATTATCATGGCTGATTGACAATAAAGTGGTTGTGTCAAGGGCGAGAGTAAAATATATTGCAAAGGGCAGTTGCCCAATTAAACAAGGGGAAGTAAGTCGAGAGGGGATCATATGCGACTGTTGCAAGAAGGTGTTTAGTCTTAGTGACTTTGAAAGTCATGCAGGCTGCAGTGAGACTCATGGTGGCTGCAGTTCCCACAGACCTGCTGCCAATATTATTCTGGAAAATGGAAAGTCTCTCTTAGAATGCCAGATACAACTCTTGAGTGAAAAAAGGAAGAGGAGCTGCAGATCACAACCACATAATAGAATGAAGGGTAATTGGCCTCCCGAAAATTATTCCACTTGTACTGTGTGTCATGAAGGTGGTCATTTGGTCTTATGCGATCTATGTCCCTCAGCATTCCACCAGAGTTGCATTGGTTTGAAGGATGTTCCAGTTGGTGACTGGTTCTGTCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

232

Amino Acids

25.61

Weight (kDa)

9.13

Isoelectric Point (pI)

63.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 106 - 163 4.6e-19 Tify domain binding domain
PHD PF00628 193 - 230 9.4e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 2 cut(s) 139, 214
AfaI GTAC 5 cut(s) 121, 136, 145, 226, 580
AgsI TTSAA 2 cut(s) 383, 658
AluBI AGCT 3 cut(s) 79, 516, 692
AluI AGCT 3 cut(s) 79, 516, 692
Alw26I GTCTC 2 cut(s) 398, 471
AlwI GGATC 1 cut(s) 344
AoxI GGCC 3 cut(s) 139, 214, 554
ApeKI GCWGC 4 cut(s) 396, 417, 437, 516
AspLEI GCGC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 686
BauI CACGAG 1 cut(s) 156
BbvCI CCTCAGC 2 cut(s) 164, 628
BbvI GCAGC 4 cut(s) 383, 404, 424, 503
BccI CCATC 1 cut(s) 225
BceAI ACGGC 2 cut(s) 126, 229
BciVI GTATCC 1 cut(s) 107
BcoDI GTCTC 2 cut(s) 398, 471
BfmI CTRYAG 3 cut(s) 397, 418, 517
BfuAI ACCTGC 1 cut(s) 442
BfuI GTATCC 1 cut(s) 107
BisI GCNGC 4 cut(s) 397, 418, 438, 517
BlsI GCNGC 4 cut(s) 398, 419, 439, 518
BmcAI AGTACT 1 cut(s) 121
BmsI GCATC 1 cut(s) 110
Bpu10I CCTNAGC 2 cut(s) 164, 628
BpuEI CTTGAG 1 cut(s) 514
Bse1I ACTGG 4 cut(s) 127, 142, 668, 683
BseGI GGATG 2 cut(s) 217, 667
BseMII CTCAG 2 cut(s) 155, 642
BseNI ACTGG 4 cut(s) 127, 142, 668, 683
BseRI GAGGAG 1 cut(s) 526
BseXI GCAGC 4 cut(s) 383, 404, 424, 503
BsgI GTGCAG 1 cut(s) 203
BshFI GGCC 3 cut(s) 141, 216, 556
BslFI GGGAC 1 cut(s) 609
BsmAI GTCTC 2 cut(s) 398, 471
BsmFI GGGAC 1 cut(s) 609
BsmI GAATGC 2 cut(s) 482, 632
BsnI GGCC 3 cut(s) 141, 216, 556
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 336, 521, 616
BspANI GGCC 3 cut(s) 141, 216, 556
BspCNI CTCAG 2 cut(s) 156, 641
BspHI TCATGA 1 cut(s) 589
BspMAI CTGCAG 3 cut(s) 401, 422, 521
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 224
BsrI ACTGG 4 cut(s) 127, 142, 668, 683
BssMI GATC 3 cut(s) 336, 521, 616
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 4 cut(s) 9, 119, 350, 583
Bst6I CTCTTC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 4 cut(s) 164, 371, 472, 628
BstF5I GGATG 2 cut(s) 217, 667
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 339, 524, 619
BstMAI GTCTC 2 cut(s) 398, 471
BstMBI GATC 3 cut(s) 336, 521, 616
BstMWI GCNNNNNNNGC 2 cut(s) 85, 351
BstSFI CTRYAG 3 cut(s) 397, 418, 517
BstV1I GCAGC 4 cut(s) 383, 404, 424, 503
BsuI GTATCC 1 cut(s) 107
BsuRI GGCC 3 cut(s) 141, 216, 556
BtsCI GGATG 2 cut(s) 217, 667
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 394
CciI TCATGA 1 cut(s) 589
CfoI GCGC 1 cut(s) 151
Csp6I GTAC 5 cut(s) 120, 135, 144, 225, 579
CspCI CAANNNNNGTGG 2 cut(s) 626, 661
CviAII CATG 4 cut(s) 237, 389, 410, 590
CviJI RGCY 9 cut(s) 79, 141, 216, 241, 396, 417, 516, 556, 692
CviKI_1 RGCY 9 cut(s) 79, 141, 216, 241, 396, 417, 516, 556, 692
CviQI GTAC 5 cut(s) 120, 135, 144, 225, 579
DdeI CTNAG 4 cut(s) 164, 371, 472, 628
DpnI GATC 3 cut(s) 338, 523, 618
DpnII GATC 3 cut(s) 336, 521, 616
EaeI YGGCCR 2 cut(s) 139, 214
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
FaeI CATG 4 cut(s) 240, 392, 413, 593
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 609
FatI CATG 4 cut(s) 236, 388, 409, 589
FauNDI CATATG 1 cut(s) 341
Fnu4HI GCNGC 4 cut(s) 397, 418, 438, 517
FokI GGATG 2 cut(s) 204, 674
Fsp4HI GCNGC 4 cut(s) 397, 418, 438, 517
GlaI GCGC 1 cut(s) 150
GluI GCNGC 4 cut(s) 397, 418, 438, 517
HaeIII GGCC 3 cut(s) 141, 216, 556
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 240, 392, 413, 593
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 406
HphI GGTGA 1 cut(s) 686
Hpy188III TCNNGA 6 cut(s) 111, 329, 452, 493, 560, 590
HpyAV CCTTC 4 cut(s) 352, 538, 587, 652
HpyCH4III ACNGT 4 cut(s) 9, 119, 350, 583
HpyCH4V TGCA 9 cut(s) 101, 184, 290, 354, 392, 399, 420, 519, 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 351
HpyF3I CTNAG 4 cut(s) 164, 371, 472, 628
Hsp92II CATG 4 cut(s) 240, 392, 413, 593
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 3 cut(s) 336, 521, 616
LmnI GCTCC 2 cut(s) 15, 513
Lsp1109I GCAGC 4 cut(s) 383, 404, 424, 503
LweI GCATC 1 cut(s) 110
MaeIII GTNAC 5 cut(s) 3, 168, 193, 374, 674
MalI GATC 3 cut(s) 338, 523, 618
MboI GATC 3 cut(s) 336, 521, 616
MboII GAAGA 2 cut(s) 99, 520
MluCI AATT 3 cut(s) 306, 550, 565
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 6 cut(s) 81, 159, 325, 504, 567, 637
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 482, 632
MwoI GCNNNNNNNGC 2 cut(s) 85, 351
NdeI CATATG 1 cut(s) 341
NdeII GATC 3 cut(s) 336, 521, 616
NlaIII CATG 4 cut(s) 240, 392, 413, 593
NmuCI GTSAC 4 cut(s) 168, 193, 374, 674
PagI TCATGA 1 cut(s) 589
PctI GAATGC 2 cut(s) 482, 632
PkrI GCNGC 4 cut(s) 398, 419, 439, 518
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PstI CTGCAG 3 cut(s) 401, 422, 521
RsaI GTAC 5 cut(s) 121, 136, 145, 226, 580
RsaNI GTAC 5 cut(s) 120, 135, 144, 225, 579
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 4 cut(s) 397, 418, 438, 517
Sau3AI GATC 3 cut(s) 336, 521, 616
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 1 cut(s) 400
SetI ASST 8 cut(s) 81, 170, 195, 363, 436, 518, 598, 694
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 3 cut(s) 397, 418, 517
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 3 cut(s) 306, 550, 565
SspI AATATT 3 cut(s) 22, 231, 445
TaaI ACNGT 4 cut(s) 9, 119, 350, 583
TaqI TCGA 1 cut(s) 328
TasI AATT 3 cut(s) 306, 550, 565
TatI WGTACW 3 cut(s) 119, 224, 578
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 4 cut(s) 168, 193, 374, 674
TseI GCWGC 4 cut(s) 396, 417, 437, 516
Tsp45I GTSAC 4 cut(s) 168, 193, 374, 674
TspDTI ATGAA 3 cut(s) 143, 557, 606
TspRI CASTG 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 3 cut(s) 448, 647, 675
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.