Rh6AG053700

ubiquitinyl hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001222
Physical Location & Seq
Reverse (-)
7903585 .. 7909459
5875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG053700.1

Sequence Viewer

Length: 2025 bp
ATGGAAGGGTTTTGGGGTGGTGAAAGGAAGAATCACAGAGTGAAGCATCTTGCATTCAAACAGAGGAGTAGAAGTTGTGTTAGCATGTCATCCGTGAGCAAATTTGTGGAGTTTGACAATGCAAATGGTGAAAAGGAAGAGAGTGCTACCACTCCGAAGTTGAAAAGGCGAAAGCCGTCTGCATCTTCCTGTGGTTATGGAACTGATAGTGATGGTAGTCAGCAACCTTGTGTGCTGAGGTCAAGAAATCGAGTGCAGGAAGTGGTTACTCCTACTTCCACACACCATCATCCTTGTACAGTCTTATCTTGGCTGATTGACAACAATGTGGTTTTGCCAAGGGAGAAATTGCGTTATTGTAGCGCAAGGGGGAGTCATGCTGTGGCAGAAGGAAAAGTATGTAGAGAGGGGATTGAATGCAACTGTTGCCAGCAGGTTTTTACACTTGGTGGCTTTGACAGTCATGCTGTGGCAGAAGGAAAAGTATGTAGAGAGGGGATTGAATGCAACTGTTGCCAGCAGGCTTTTACACTTGGTGGCTTTGACAGTCATGCTGGCTGCAGTAACTACAGACCTGCAGCCAATATTTTTCTGCAAGGTGGAAAGTCTCTCCTAGATTGCCAGATGCAAATTATGACTGAAAGAGAGAAGAAGAGATGCAGACTAGAACCACATGATGTGATGAAGGGTAATTTGCCTCGAATAGAAAATGATAGCTTTTGTACAGTCTGTCAGGATGGTGGTGATTTGATATTATGTGATCGATGTCCATCAGCATTTCACAAGAGTTGCATTGGTTTCGAGGATGTTCCAGATGGTGACTGGTTCTGTCCAGCTTGCTGTTGTGTAATTTGTGGCTGCAGCATAAATCCTACAATCCATTACCATACCTGTGGTCAATGTGAACGTAAATATCACACCAGCTGCCTGAGGAAAAGAAGCATAGATAATTTAGAGATGAATTCAAAAGGAAATTGGTTCTGCAGCAATGACTGTAAAAAGATATTTTTAGGCCTCCACGAGCGTTTAGGGAAACAAATTTCAGTGGGTGTTGACAATCTAACTTGGTCACTTTGGAAGTCCGTGAAATCTGATAGTGATAATCCTAATGAACCTGATAATGATGCTGCAACGGAGACTTATACCAAACTCAATCTTGCCCTTCAAGTGATGCAGGAGTGTTTTAAGCATTTTAAGAAACCTCACACTGGGGGATATCTTGCAGAAGATATCATCTTCAGCAGAGGGTCACATCTTGATGGCATGAACTTTCGGGGGTTTTACACTGTGCTTTTGGAGAAAAATGACGCTTTAATAACTGTAGCTACTGTAAGGATCTATGGAGCAAAGGTGGCTGAAGTACCTCTTATTGGTACCAGATTGCAGCATCGTCAAAGTGGAATGTGTCGTGTATTGATGCATTTAATTGAAAAGATGCTTATGGACTTGGGTGTGGAGAGATTGGTTTTGCCCATTGTCCCCAGATCAGTAGGAAAATGGAATACTTCATTTGGATTTTCAGATATCAAAGGTTCTGATAGGCTGCAGTTTCTGGATTATAGATTCATGCATTTTGAGGATACCATTATGTGTCAGAAATGCTTAAAAAGGACATATCTAGCTGAACCATGCCCATCAAAAGGAATTTTGCTTGATGTTGCTGGAAGTGTTGATGATATTGATTTTGATGGGTCCAGCGTCCATAAAGTCTCATTCACATGGAAAATTTATAATTTCTCTAGCCGTGGGAAGGAATACTCTGAGACTTTCCTCACTGGTGATTTGAGATGGCGGATGCTTATGTATCCAAAGGGCAACACTGTTGATAACTTGTCGGTATATTTGGATGTTCGAGGTGCCTCAGAATTGCCACTTGAGTGGTCTAGATGTGTGAAATTCAGCTTGACTGTGGTTAATCAACTTCAACACAGCCAGTCAATAACAAGGGGTACTCTGTTTCCTTTTTGTTTTCTGTATTCCACATATATGCTTCTATTCTTTTTCTGTTGTCTTGATATTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

674

Amino Acids

76.13

Weight (kDa)

8.18

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 161 - 210 1.7e-16 Tify domain binding domain
PHD-1st_NSD PF23011 238 - 280 4.3e-06 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD PF00628 241 - 280 1.3e-08 PHD-finger
IDM1_C PF23209 395 - 533 2.1e-46 Increased DNA methylation 1, C-terminal domain
MATH_2 PF22486 571 - 648 1.3e-15 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1731
Acc36I ACCTGC 2 cut(s) 424, 583
Acc65I GGTACC 1 cut(s) 1373
AccB1I GGYRCC 2 cut(s) 1373, 1856
AciI CCGC 1 cut(s) 1792
AclWI GGATC 1 cut(s) 1343
AcsI RAATTY 6 cut(s) 101, 961, 1038, 1644, 1725, 1895
AcuI CTGAAG 2 cut(s) 1222, 1377
AdeI CACNNNGTG 3 cut(s) 40, 449, 536
AfaI GTAC 5 cut(s) 298, 724, 1362, 1375, 1951
AfiI CCNNNNNNNGG 4 cut(s) 1208, 1370, 1640, 1750
AgsI TTSAA 8 cut(s) 58, 163, 416, 503, 966, 1166, 1430, 1925
AleI CACNNNNGTG 1 cut(s) 1876
AluBI AGCT 6 cut(s) 717, 836, 924, 1325, 1622, 1902
AluI AGCT 6 cut(s) 717, 836, 924, 1325, 1622, 1902
Alw26I GTCTC 4 cut(s) 612, 1130, 1714, 1757
AlwI GGATC 1 cut(s) 1343
AlwNI CAGNNNCTG 1 cut(s) 1552
AoxI GGCC 1 cut(s) 1012
ApeKI GCWGC 9 cut(s) 558, 578, 858, 861, 924, 984, 1127, 1384, 1543
ApoI RAATTY 6 cut(s) 101, 961, 1038, 1644, 1725, 1895
Asp718I GGTACC 1 cut(s) 1373
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 1692
AsuHPI GGTGA 5 cut(s) 32, 140, 755, 830, 1790
AvaII GGWCC 1 cut(s) 1692
AxyI CCTNAGG 1 cut(s) 929
BanI GGYRCC 2 cut(s) 1373, 1856
BauI CACGAG 1 cut(s) 1019
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 9 cut(s) 545, 590, 845, 873, 911, 996, 1114, 1396, 1530
BccI CCATC 9 cut(s) 206, 294, 731, 778, 809, 1253, 1642, 1682, 1782
BceAI ACGGC 2 cut(s) 160, 1728
BcgI CGANNNNNNTGC 2 cut(s) 781, 815
BciVI GTATCC 2 cut(s) 1573, 1815
BcoDI GTCTC 4 cut(s) 612, 1130, 1714, 1757
BfaI CTAG 5 cut(s) 614, 665, 1619, 1740, 1884
BfmI CTRYAG 7 cut(s) 559, 568, 576, 859, 982, 1320, 1544
BfuAI ACCTGC 2 cut(s) 424, 583
BfuI GTATCC 2 cut(s) 1573, 1815
BisI GCNGC 9 cut(s) 559, 579, 859, 862, 925, 985, 1128, 1385, 1544
BlsI GCNGC 9 cut(s) 560, 580, 860, 863, 926, 986, 1129, 1386, 1545
Bme18I GGWCC 1 cut(s) 1692
BmgT120I GGNCC 1 cut(s) 1692
BmiI GGNNCC 3 cut(s) 1375, 1693, 1858
BmrI ACTGGG 1 cut(s) 1218
BmuI ACTGGG 1 cut(s) 1218
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 1895
Bsa29I ATCGAT 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 769
BsaJI CCNNGG 2 cut(s) 338, 1744
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 1335, 1365
Bsc4I CCNNNNNNNGG 4 cut(s) 1208, 1370, 1640, 1750
Bse1I ACTGG 4 cut(s) 827, 1213, 1780, 1933
Bse21I CCTNAGG 1 cut(s) 929
Bse3DI GCAATG 1 cut(s) 994
Bse8I GATNNNNATC 1 cut(s) 769
BseCI ATCGAT 1 cut(s) 763
BseDI CCNNGG 2 cut(s) 338, 1744
BseGI GGATG 6 cut(s) 89, 289, 742, 811, 1800, 1852
BseJI GATNNNNATC 1 cut(s) 769
BseLI CCNNNNNNNGG 4 cut(s) 1208, 1370, 1640, 1750
BseMI GCAATG 1 cut(s) 994
BseMII CTCAG 4 cut(s) 227, 920, 1752, 1875
BseNI ACTGG 4 cut(s) 827, 1213, 1780, 1933
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 9 cut(s) 545, 590, 845, 873, 911, 996, 1114, 1396, 1530
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 1014
BshNI GGYRCC 2 cut(s) 1373, 1856
BshVI ATCGAT 1 cut(s) 763
BslFI GGGAC 1 cut(s) 1463
BslI CCNNNNNNNGG 4 cut(s) 1208, 1370, 1640, 1750
BsmAI GTCTC 4 cut(s) 612, 1130, 1714, 1757
BsmFI GGGAC 1 cut(s) 1463
BsmI GAATGC 3 cut(s) 53, 422, 509
BsnI GGCC 1 cut(s) 1014
Bsp1407I TGTACA 2 cut(s) 296, 722
Bsp143I GATC 3 cut(s) 760, 1335, 1484
BspACI CCGC 1 cut(s) 1792
BspANI GGCC 1 cut(s) 1014
BspCNI CTCAG 4 cut(s) 228, 921, 1753, 1874
BspDI ATCGAT 1 cut(s) 763
BspLI GGNNCC 3 cut(s) 1375, 1693, 1858
BspMAI CTGCAG 5 cut(s) 563, 580, 863, 986, 1548
BspMI ACCTGC 2 cut(s) 424, 583
BspPI GGATC 1 cut(s) 1343
BspT107I GGYRCC 2 cut(s) 1373, 1856
BsrDI GCAATG 1 cut(s) 994
BsrGI TGTACA 2 cut(s) 296, 722
BsrI ACTGG 4 cut(s) 827, 1213, 1780, 1933
BssECI CCNNGG 2 cut(s) 338, 1744
BssMI GATC 3 cut(s) 760, 1335, 1484
BssSI CACGAG 1 cut(s) 1019
BssT1I CCWWGG 1 cut(s) 338
Bst2BI CACGAG 1 cut(s) 1019
Bst6I CTCTTC 2 cut(s) 132, 647
BstAPI GCANNNNNTGC 2 cut(s) 426, 513
BstAUI TGTACA 2 cut(s) 296, 722
BstC8I GCNNGC 5 cut(s) 431, 518, 522, 556, 838
BstDEI CTNAG 4 cut(s) 236, 929, 1761, 1861
BstDSI CCRYGG 1 cut(s) 1744
BstF5I GGATG 6 cut(s) 89, 289, 742, 811, 1800, 1852
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 3 cut(s) 763, 1338, 1487
BstMAI GTCTC 4 cut(s) 612, 1130, 1714, 1757
BstMBI GATC 3 cut(s) 760, 1335, 1484
BstMWI GCNNNNNNNGC 3 cut(s) 426, 513, 1352
BstNSI RCATGY 1 cut(s) 88
BstSFI CTRYAG 7 cut(s) 559, 568, 576, 859, 982, 1320, 1544
BstV1I GCAGC 9 cut(s) 545, 590, 845, 873, 911, 996, 1114, 1396, 1530
BstX2I RGATCY 1 cut(s) 1335
BstXI CCANNNNNNTGG 2 cut(s) 893, 1878
BstYI RGATCY 1 cut(s) 1335
Bsu15I ATCGAT 1 cut(s) 763
Bsu36I CCTNAGG 1 cut(s) 929
BsuI GTATCC 2 cut(s) 1573, 1815
BsuRI GGCC 1 cut(s) 1014
BsuTUI ATCGAT 1 cut(s) 763
BtgI CCRYGG 1 cut(s) 1744
BtsCI GGATG 6 cut(s) 89, 289, 742, 811, 1800, 1852
BtsIMutI CAGTG 5 cut(s) 1050, 1206, 1284, 1773, 1818
BveI ACCTGC 2 cut(s) 424, 583
Cac8I GCNNGC 5 cut(s) 431, 518, 522, 556, 838
CaiI CAGNNNCTG 1 cut(s) 1552
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 1692
ClaI ATCGAT 1 cut(s) 763
CseI GACGC 2 cut(s) 1316, 1687
Csp6I GTAC 5 cut(s) 297, 723, 1361, 1374, 1950
CviQI GTAC 5 cut(s) 297, 723, 1361, 1374, 1950
DdeI CTNAG 4 cut(s) 236, 929, 1761, 1861
DpnI GATC 3 cut(s) 762, 1337, 1486
DpnII GATC 3 cut(s) 760, 1335, 1484
DraIII CACNNNGTG 3 cut(s) 40, 449, 536
Eam1104I CTCTTC 2 cut(s) 132, 647
EarI CTCTTC 2 cut(s) 132, 647
EciI GGCGGA 1 cut(s) 1807
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 1014
Eco32I GATATC 3 cut(s) 1217, 1231, 1525
Eco47I GGWCC 1 cut(s) 1692
Eco57I CTGAAG 2 cut(s) 1222, 1377
Eco81I CCTNAGG 1 cut(s) 929
EcoRI GAATTC 1 cut(s) 961
EcoRV GATATC 3 cut(s) 1217, 1231, 1525
EcoT14I CCWWGG 1 cut(s) 338
EcoT22I ATGCAT 2 cut(s) 1422, 1572
ErhI CCWWGG 1 cut(s) 338
FalI AAGNNNNNCTT 2 cut(s) 1350, 1382
FaqI GGGAC 1 cut(s) 1463
Fnu4HI GCNGC 9 cut(s) 559, 579, 859, 862, 925, 985, 1128, 1385, 1544
FokI GGATG 6 cut(s) 76, 276, 749, 818, 1807, 1859
Fsp4HI GCNGC 9 cut(s) 559, 579, 859, 862, 925, 985, 1128, 1385, 1544
FspBI CTAG 5 cut(s) 614, 665, 1619, 1740, 1884
GlaI GCGC 1 cut(s) 364
GluI GCNGC 9 cut(s) 559, 579, 859, 862, 925, 985, 1128, 1385, 1544
HaeIII GGCC 1 cut(s) 1014
HgaI GACGC 2 cut(s) 1316, 1687
HhaI GCGC 1 cut(s) 365
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HinfI GANTC 3 cut(s) 31, 373, 1563
HphI GGTGA 5 cut(s) 32, 140, 755, 830, 1790
Hpy166II GTNNAC 2 cut(s) 905, 1054
Hpy188I TCNGA 7 cut(s) 156, 1093, 1522, 1537, 1596, 1762, 1864
Hpy188III TCNNGA 7 cut(s) 243, 734, 812, 1256, 1553, 1884, 2012
Hpy8I GTNNAC 2 cut(s) 905, 1054
HpyAV CCTTC 5 cut(s) 383, 470, 679, 1172, 1744
HpyCH4IV ACGT 1 cut(s) 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 426, 513, 1352
HpyF3I CTNAG 4 cut(s) 236, 929, 1761, 1861
HpySE526I ACGT 1 cut(s) 907
HspAI GCGC 1 cut(s) 363
KpnI GGTACC 1 cut(s) 1377
Kzo9I GATC 3 cut(s) 760, 1335, 1484
LmnI GCTCC 1 cut(s) 1343
Lsp1109I GCAGC 9 cut(s) 545, 590, 845, 873, 911, 996, 1114, 1396, 1530
MaeI CTAG 5 cut(s) 614, 665, 1619, 1740, 1884
MaeII ACGT 1 cut(s) 907
MaeIII GTNAC 5 cut(s) 265, 563, 818, 1068, 1248
MalI GATC 3 cut(s) 762, 1337, 1486
MboI GATC 3 cut(s) 760, 1335, 1484
MboII GAAGA 7 cut(s) 40, 149, 177, 661, 664, 1228, 1238
MflI RGATCY 1 cut(s) 1335
MlyI GAGTC 1 cut(s) 382
Mph1103I ATGCAT 2 cut(s) 1422, 1572
MseI TTAA 6 cut(s) 1185, 1194, 1313, 1424, 1604, 1914
MslI CAYNNNNRTG 5 cut(s) 891, 1257, 1717, 1876, 1985
MspA1I CMGCKG 1 cut(s) 924
Mva1269I GAATGC 3 cut(s) 53, 422, 509
MwoI GCNNNNNNNGC 3 cut(s) 426, 513, 1352
NdeII GATC 3 cut(s) 760, 1335, 1484
NlaIV GGNNCC 3 cut(s) 1375, 1693, 1858
NmuCI GTSAC 3 cut(s) 818, 1068, 1248
NsiI ATGCAT 2 cut(s) 1422, 1572
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 1876
PceI AGGCCT 1 cut(s) 1014
PctI GAATGC 3 cut(s) 53, 422, 509
PfeI GAWTC 2 cut(s) 31, 1563
PkrI GCNGC 9 cut(s) 560, 580, 860, 863, 926, 986, 1129, 1386, 1545
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
PsiI TTATAA 1 cut(s) 1731
PspN4I GGNNCC 3 cut(s) 1375, 1693, 1858
PspPI GGNCC 1 cut(s) 1692
PstI CTGCAG 5 cut(s) 563, 580, 863, 986, 1548
PstNI CAGNNNCTG 1 cut(s) 1552
PsuI RGATCY 1 cut(s) 1335
PvuII CAGCTG 1 cut(s) 924
RsaI GTAC 5 cut(s) 298, 724, 1362, 1375, 1951
RsaNI GTAC 5 cut(s) 297, 723, 1361, 1374, 1950
RseI CAYNNNNRTG 5 cut(s) 891, 1257, 1717, 1876, 1985
SaqAI TTAA 6 cut(s) 1185, 1194, 1313, 1424, 1604, 1914
SatI GCNGC 9 cut(s) 559, 579, 859, 862, 925, 985, 1128, 1385, 1544
Sau3AI GATC 3 cut(s) 760, 1335, 1484
Sau96I GGNCC 1 cut(s) 1692
SchI GAGTC 1 cut(s) 382
SfcI CTRYAG 7 cut(s) 559, 568, 576, 859, 982, 1320, 1544
SinI GGWCC 1 cut(s) 1692
SmiMI CAYNNNNRTG 5 cut(s) 891, 1257, 1717, 1876, 1985
SmlI CTYRAG 1 cut(s) 1874
SmoI CTYRAG 1 cut(s) 1874
SseBI AGGCCT 1 cut(s) 1014
SsiI CCGC 1 cut(s) 1792
SspI AATATT 1 cut(s) 586
SspMI CTAG 5 cut(s) 614, 665, 1619, 1740, 1884
StuI AGGCCT 1 cut(s) 1014
StyI CCWWGG 1 cut(s) 338
TaiI ACGT 1 cut(s) 910
TaqI TCGA 5 cut(s) 250, 700, 763, 801, 1852
TatI WGTACW 2 cut(s) 296, 722
TfiI GAWTC 2 cut(s) 31, 1563
Tru1I TTAA 6 cut(s) 1185, 1194, 1313, 1424, 1604, 1914
Tru9I TTAA 6 cut(s) 1185, 1194, 1313, 1424, 1604, 1914
TscAI CASTG 5 cut(s) 1050, 1213, 1291, 1780, 1825
TseFI GTSAC 3 cut(s) 818, 1068, 1248
TseI GCWGC 9 cut(s) 558, 578, 858, 861, 924, 984, 1127, 1384, 1543
Tsp45I GTSAC 3 cut(s) 818, 1068, 1248
TspDTI ATGAA 6 cut(s) 698, 974, 1125, 1280, 1497, 1555
TspGWI ACGGA 3 cut(s) 82, 1072, 1148
TspRI CASTG 5 cut(s) 1050, 1213, 1291, 1780, 1825
VpaK11BI GGWCC 1 cut(s) 1692
XapI RAATTY 6 cut(s) 101, 961, 1038, 1644, 1725, 1895
XbaI TCTAGA 1 cut(s) 1883
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 819
XspI CTAG 5 cut(s) 614, 665, 1619, 1740, 1884
Zsp2I ATGCAT 2 cut(s) 1422, 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.