Rmu_co8018082.1_g000001

ubiquitinyl hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8018082.1
OG0001222
Physical Location & Seq
Forward (+)
1 .. 537
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8018082.1_g000001.1.cds

Sequence Viewer

Length: 537 bp
tgcttcaaaaatgtgactgctgtccatgatgcaacaacttctcaacacgtttacatcgagctgtctgatgccagttctgagcctatggaagttccagatctttcttcagctacacggaaggcaactagctttcaacatatgactgcctcccaggacacagcaagttctgcagaagttatcaagttcctttctgatatcagtactgaccattccctcgatgaggaatttgatgttgtgtcctccacatcaccttctgatctcttgaacttcaggggcttggcggatataaagaaagattttgttcccctactcgaggaagtttgtttatggcatccttctcttattgaatgccaaaggaagagtagtccccagttcactgaatgggcatttactgccttgggaaaagtcctgcattttttgaagaccaaaaaggttaaggatatgacaacatatgtttgtaaagacctacaaattttatggtatgagctgaaggccttcggatttgacctgacatggctaaagcctcaggttgaaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

179

Amino Acids

20.28

Weight (kDa)

5.19

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AcsI RAATTY 2 cut(s) 224, 471
AcuI CTGAAG 3 cut(s) 90, 253, 509
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 220, 313
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 6 cut(s) 7, 134, 265, 347, 421, 533
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 4 cut(s) 61, 110, 129, 487
AluI AGCT 4 cut(s) 61, 110, 129, 487
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 492
ApoI RAATTY 2 cut(s) 224, 471
Asp700I GAANNNNTTC 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 428
BciT130I CCWGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 3 cut(s) 19, 58, 340
BmuI ACTGGG 1 cut(s) 364
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 150, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 313
Bse1I ACTGG 2 cut(s) 72, 370
Bse21I CCTNAGG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 150, 396
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 220, 313
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 72, 370
BshFI GGCC 1 cut(s) 494
BsiHKCI CYCGRG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 220, 313
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 1 cut(s) 494
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 2 cut(s) 97, 256
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 172
BsrI ACTGG 2 cut(s) 72, 370
BssECI CCNNGG 2 cut(s) 150, 396
BssMI GATC 2 cut(s) 97, 256
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 353
BstAPI GCANNNNNTGC 2 cut(s) 167, 392
BstDEI CTNAG 2 cut(s) 78, 525
BstENI CCTNNNNNAGG 2 cut(s) 218, 311
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 2 cut(s) 100, 259
BstMBI GATC 2 cut(s) 97, 256
BstMWI GCNNNNNNNGC 2 cut(s) 167, 392
BstNI CCWGG 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 525
BsuRI GGCC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 375
Csp6I GTAC 1 cut(s) 201
CviAII CATG 2 cut(s) 26, 513
CviJI RGCY 9 cut(s) 61, 82, 110, 129, 276, 487, 494, 517, 523
CviKI_1 RGCY 9 cut(s) 61, 82, 110, 129, 276, 487, 494, 517, 523
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 78, 525
DpnI GATC 2 cut(s) 99, 258
DpnII GATC 2 cut(s) 97, 256
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 494
Eco32I GATATC 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 90, 253, 509
Eco81I CCTNAGG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 311
EcoNI CCTNNNNNAGG 2 cut(s) 218, 311
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 2 cut(s) 29, 516
FaqI GGGAC 1 cut(s) 351
FatI CATG 2 cut(s) 25, 512
FauNDI CATATG 2 cut(s) 138, 451
FokI GGATG 1 cut(s) 318
FspBI CTAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 494
Hin1II CATG 2 cut(s) 29, 516
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 2 cut(s) 52, 375
Hpy188I TCNGA 5 cut(s) 67, 79, 193, 256, 500
Hpy188III TCNNGA 2 cut(s) 95, 262
Hpy8I GTNNAC 2 cut(s) 52, 375
HpyAV CCTTC 5 cut(s) 112, 261, 345, 484, 505
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 32, 170, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 392
HpyF3I CTNAG 2 cut(s) 78, 525
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 29, 516
Kzo9I GATC 2 cut(s) 97, 256
LpnPI CCDG 9 cut(s) 85, 108, 137, 164, 256, 383, 422, 512, 521
LweI GCATC 3 cut(s) 19, 58, 340
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 99, 258
MboI GATC 2 cut(s) 97, 256
MboII GAAGA 3 cut(s) 96, 370, 433
MflI RGATCY 1 cut(s) 97
MluCI AATT 2 cut(s) 224, 471
MnlI CCTC 6 cut(s) 157, 214, 224, 250, 307, 534
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 167, 392
NdeI CATATG 2 cut(s) 138, 451
NdeII GATC 2 cut(s) 97, 256
NlaIII CATG 2 cut(s) 29, 516
NmuCI GTSAC 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 311
PceI AGGCCT 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 494
PshAI GACNNNNGTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 311
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 435
Sau3AI GATC 2 cut(s) 97, 256
ScaI AGTACT 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 152
SfaNI GCATC 3 cut(s) 19, 58, 340
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 2 cut(s) 224, 471
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 1 cut(s) 281
SspMI CTAG 1 cut(s) 126
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 396
TaiI ACGT 1 cut(s) 51
TaqI TCGA 3 cut(s) 57, 216, 312
TasI AATT 2 cut(s) 224, 471
TatI WGTACW 1 cut(s) 200
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 382
XagI CCTNNNNNAGG 2 cut(s) 218, 311
XapI RAATTY 2 cut(s) 224, 471
XhoI CTCGAG 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.