AT5G65840

AhpC/TSA antioxidant enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003579
Physical Location & Seq
Reverse (-)
26343728 .. 26346123
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65840.1

Sequence Viewer

Length: 828 bp
ATGATTTTGGTTTCTGAATCACCAATGGCGATTCTCTCTCTACGATCTTCGAGCTCATTGCCGCTTATTTGTTCCACAATTTCTCCTCTGTGCTCGAAACCCATGTTGTCTCAGTTACCATCGAATTTCTCATCGTCGATTGCTTCTGTTCCTGTCACCAAATTAAAATCCAGTTACAGTTCCTCCGTTTCACCGATTAGTAGGCCTCGTGTGGTTTCCGCGAGAGCTGCCACTGAGTCCTTCACTGATTACAGAGAAGATATCGGTGAGATACTCGGCGATGTCTCTATCTTTACTGCTTCAGGCCAACGCGTGCAATTCAGTGATCTCTGGGATCAGAAAGATGGAATTGCTGCCGTTGTACTCTTGAGGCATTTCGGATGCGTTTGCTGTTGGGAACTTGCTACTGCTTTGAAAGAGGCTAAACCGAGATTTGATGCGGCTGGTGTTAAATTGATAGCTGTTGGAGTTGGAACTCCTGACAAGGCTCGTATACTTGCAACTCGGTTACCTTTTCCCATGGAATGTCTTTATGCGGATCCTGAACGCAAGGCATATGATGTTCTTGGTTTATACTTCGGTTTGGGCCGCACTTTCTTCAACCCAGCTAGCACCAAGGTCTTCTCAAGATTTAGCGAGATTCGAGAAGCAACAAAAAATTACACCATAGAAGCCACTCCTGAAGACAGAAGCAGTGTGTTGCAACAGGGAGGTACGTTTGTGTTCAGAGGCAAGAAATTATTGTACGGTCGAAAAGACGAAGGCACGGGAGATCATCCATCTCTGGATGATGTCATTAATGTCTGCTGCAAAGCCACTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

275

Amino Acids

29.88

Weight (kDa)

8.58

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 138 - 254 6.3e-20 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 493
AccII CGCG 2 cut(s) 221, 312
AciI CCGC 5 cut(s) 62, 219, 440, 536, 589
AclWI GGATC 3 cut(s) 342, 533, 546
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 285, 702
AfaI GTAC 3 cut(s) 363, 715, 746
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 2 cut(s) 415, 601
AluBI AGCT 4 cut(s) 54, 227, 461, 608
AluI AGCT 4 cut(s) 54, 227, 461, 608
Alw21I GWGCWC 2 cut(s) 56, 95
Alw26I GTCTC 2 cut(s) 114, 289
AlwI GGATC 3 cut(s) 342, 533, 546
AoxI GGCC 3 cut(s) 203, 304, 586
ApeKI GCWGC 3 cut(s) 227, 353, 807
ApoI RAATTY 1 cut(s) 124
AseI ATTAAT 1 cut(s) 798
AspS9I GGNCC 1 cut(s) 586
AsuHPI GGTGA 4 cut(s) 12, 148, 183, 278
AsuNHI GCTAGC 1 cut(s) 608
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BamHI GGATCC 1 cut(s) 538
BanII GRGCYC 1 cut(s) 56
BauI CACGAG 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 613, 690
Bbv12I GWGCWC 2 cut(s) 56, 95
BbvI GCAGC 3 cut(s) 214, 340, 794
BccI CCATC 3 cut(s) 127, 338, 787
BceAI ACGGC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcoDI GTCTC 2 cut(s) 114, 289
BfaI CTAG 1 cut(s) 609
BisI GCNGC 6 cut(s) 62, 228, 354, 441, 589, 808
BlsI GCNGC 6 cut(s) 63, 229, 355, 442, 590, 809
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 1 cut(s) 540
BmsI GCATC 2 cut(s) 371, 427
BmtI GCTAGC 1 cut(s) 612
BpiI GAAGAC 2 cut(s) 613, 690
BpuEI CTTGAG 2 cut(s) 388, 610
BsaJI CCNNGG 2 cut(s) 519, 615
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 167, 197
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 519, 615
BseGI GGATG 3 cut(s) 386, 775, 793
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 125, 225
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 214, 340, 794
BseYI CCCAGC 1 cut(s) 604
Bsh1236I CGCG 2 cut(s) 221, 312
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 3 cut(s) 205, 306, 588
BsiEI CGRYCG 1 cut(s) 751
BsiHKAI GWGCWC 2 cut(s) 56, 95
BsmAI GTCTC 2 cut(s) 114, 289
BsnI GGCC 3 cut(s) 205, 306, 588
Bsp1286I GDGCHC 2 cut(s) 56, 95
Bsp143I GATC 5 cut(s) 44, 325, 334, 538, 772
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 5 cut(s) 62, 219, 440, 536, 589
BspANI GGCC 3 cut(s) 205, 306, 588
BspCNI CTCAG 2 cut(s) 124, 226
BspFNI CGCG 2 cut(s) 221, 312
BspLI GGNNCC 1 cut(s) 540
BspOI GCTAGC 1 cut(s) 612
BspPI GGATC 3 cut(s) 342, 533, 546
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 519, 615
BssMI GATC 5 cut(s) 44, 325, 334, 538, 772
BssNAI GTATAC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 519, 615
Bst1107I GTATAC 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 179, 749, 820
BstC8I GCNNGC 2 cut(s) 314, 610
BstDEI CTNAG 2 cut(s) 111, 234
BstDSI CCRYGG 1 cut(s) 519
BstEII GGTNACC 1 cut(s) 507
BstF5I GGATG 3 cut(s) 386, 775, 793
BstFNI CGCG 2 cut(s) 221, 312
BstKTI GATC 5 cut(s) 47, 328, 337, 541, 775
BstMAI GTCTC 2 cut(s) 114, 289
BstMBI GATC 5 cut(s) 44, 325, 334, 538, 772
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 2 cut(s) 227, 821
BstPI GGTNACC 1 cut(s) 507
BstUI CGCG 2 cut(s) 221, 312
BstV1I GCAGC 3 cut(s) 214, 340, 794
BstV2I GAAGAC 2 cut(s) 613, 690
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BstZ17I GTATAC 1 cut(s) 494
BsuRI GGCC 3 cut(s) 205, 306, 588
BtgI CCRYGG 1 cut(s) 519
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 386, 775, 793
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 5 cut(s) 231, 243, 328, 700, 816
Cac8I GCNNGC 2 cut(s) 314, 610
Cfr13I GGNCC 1 cut(s) 586
Csp6I GTAC 3 cut(s) 362, 714, 745
CviAII CATG 2 cut(s) 103, 520
CviQI GTAC 3 cut(s) 362, 714, 745
DdeI CTNAG 2 cut(s) 111, 234
DpnI GATC 5 cut(s) 46, 327, 336, 540, 774
DpnII GATC 5 cut(s) 44, 325, 334, 538, 772
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 519, 615
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 2 cut(s) 285, 702
Eco91I GGTNACC 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 54
EcoO65I GGTNACC 1 cut(s) 507
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 2 cut(s) 519, 615
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 519, 615
FaeI CATG 2 cut(s) 106, 523
FaiI YATR 8 cut(s) 104, 494, 521, 534, 556, 558, 574, 668
FatI CATG 2 cut(s) 102, 519
FauNDI CATATG 1 cut(s) 556
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 6 cut(s) 62, 228, 354, 441, 589, 808
FokI GGATG 3 cut(s) 393, 762, 800
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 6 cut(s) 62, 228, 354, 441, 589, 808
FspBI CTAG 1 cut(s) 609
GluI GCNGC 6 cut(s) 62, 228, 354, 441, 589, 808
GsaI CCCAGC 1 cut(s) 608
HaeIII GGCC 3 cut(s) 205, 306, 588
Hin1II CATG 2 cut(s) 106, 523
HinfI GANTC 4 cut(s) 17, 31, 236, 640
HphI GGTGA 4 cut(s) 12, 148, 183, 278
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 4 cut(s) 16, 339, 380, 728
Hpy188III TCNNGA 7 cut(s) 367, 479, 542, 627, 644, 680, 785
Hpy8I GTNNAC 1 cut(s) 494
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 250, 755
HpyCH4III ACNGT 3 cut(s) 179, 749, 820
HpyCH4IV ACGT 1 cut(s) 716
HpyCH4V TGCA 4 cut(s) 316, 500, 703, 810
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 821
HpyF3I CTNAG 2 cut(s) 111, 234
HpySE526I ACGT 1 cut(s) 716
Hsp92II CATG 2 cut(s) 106, 523
Kzo9I GATC 5 cut(s) 44, 325, 334, 538, 772
Lsp1109I GCAGC 3 cut(s) 214, 340, 794
LweI GCATC 2 cut(s) 371, 427
MaeI CTAG 1 cut(s) 609
MaeII ACGT 1 cut(s) 716
MaeIII GTNAC 4 cut(s) 114, 154, 173, 507
MalI GATC 5 cut(s) 46, 327, 336, 540, 774
MboI GATC 5 cut(s) 44, 325, 334, 538, 772
MboII GAAGA 5 cut(s) 39, 269, 589, 613, 695
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 56, 95
MluCI AATT 8 cut(s) 78, 124, 161, 317, 348, 452, 658, 737
MluI ACGCGT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 445, 451
MnlI CCTC 7 cut(s) 96, 193, 216, 363, 412, 704, 722
MseI TTAA 3 cut(s) 164, 450, 798
MvnI CGCG 2 cut(s) 221, 312
MwoI GCNNNNNNNGC 2 cut(s) 227, 821
NcoI CCATGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 556
NdeII GATC 5 cut(s) 44, 325, 334, 538, 772
NheI GCTAGC 1 cut(s) 608
NlaIII CATG 2 cut(s) 106, 523
NlaIV GGNNCC 1 cut(s) 540
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 154
PceI AGGCCT 1 cut(s) 205
PfeI GAWTC 3 cut(s) 17, 31, 640
PkrI GCNGC 6 cut(s) 63, 229, 355, 442, 590, 809
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 56
PspEI GGTNACC 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 540
PspPI GGNCC 1 cut(s) 586
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 3 cut(s) 363, 715, 746
RsaNI GTAC 3 cut(s) 362, 714, 745
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 3 cut(s) 164, 450, 798
SatI GCNGC 6 cut(s) 62, 228, 354, 441, 589, 808
Sau3AI GATC 5 cut(s) 44, 325, 334, 538, 772
Sau96I GGNCC 1 cut(s) 586
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 2 cut(s) 56, 95
SetI ASST 8 cut(s) 56, 229, 463, 514, 610, 621, 715, 719
SfaNI GCATC 2 cut(s) 371, 427
SmlI CTYRAG 2 cut(s) 367, 625
SmoI CTYRAG 2 cut(s) 367, 625
Sse9I AATT 8 cut(s) 78, 124, 161, 317, 348, 452, 658, 737
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 5 cut(s) 62, 219, 440, 536, 589
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 1 cut(s) 56
StuI AGGCCT 1 cut(s) 205
StyI CCWWGG 2 cut(s) 519, 615
TaaI ACNGT 3 cut(s) 179, 749, 820
TaiI ACGT 1 cut(s) 719
TaqI TCGA 6 cut(s) 50, 95, 122, 137, 643, 751
TasI AATT 8 cut(s) 78, 124, 161, 317, 348, 452, 658, 737
TatI WGTACW 1 cut(s) 361
TauI GCSGC 3 cut(s) 64, 443, 591
TfiI GAWTC 3 cut(s) 17, 31, 640
Tru1I TTAA 3 cut(s) 164, 450, 798
Tru9I TTAA 3 cut(s) 164, 450, 798
TscAI CASTG 5 cut(s) 238, 250, 328, 700, 823
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 3 cut(s) 227, 353, 807
Tsp45I GTSAC 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 5 cut(s) 238, 250, 328, 700, 823
VspI ATTAAT 1 cut(s) 798
XapI RAATTY 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 493
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.