Rorug02G0155800

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003579
Physical Location & Seq
Reverse (-)
13900248 .. 13900589
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0155800.1

Sequence Viewer

Length: 342 bp
ATGAATAGGGTTTGTCAGAAGATCCTTAATACTGGTGCTACTCTTAATACTTGGCAGCGTGATACATTTCAGTTTCGTCAAGCTGAAATGCGGGCAGTTAGGGCACGGTTAAATGAAATGTTGGAGGCACCGTTTGACTCTGCTATGAACCAGGAAAAACAAGTACTGAATATTCGTCTTCAGGAACTATTGACTCAAGAGGAGACCATCTGGAGTCAACGATCAAAAGAAATATGGTTGAAGTCGGGTGATAGAAATACTGCATATTTCCACCGGAGGCATCAAATCGGAGATAGCGTGACACTATTAAAGGGTTATTTGATGACAATGGAAGTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

113

Amino Acids

13.36

Weight (kDa)

9.35

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 197
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 273
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 282, 312
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 21, 221
BspACI CCGC 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 37
BssMI GATC 2 cut(s) 21, 221
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 108, 132
BstC8I GCNNGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 24, 224
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 21, 221
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 164
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
CviQI GTAC 1 cut(s) 164
DpnI GATC 2 cut(s) 23, 223
DpnII GATC 2 cut(s) 21, 221
Eco31I GGTCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 150
FaiI YATR 3 cut(s) 146, 235, 265
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 232
HapII CCGG 1 cut(s) 274
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
HinfI GANTC 3 cut(s) 137, 193, 214
HpaII CCGG 1 cut(s) 274
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 18, 290
Hpy188III TCNNGA 3 cut(s) 182, 197, 211
Hpy8I GTNNAC 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 108, 132
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 21, 221
LpnPI CCDG 6 cut(s) 18, 137, 164, 167, 196, 287
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 23, 223
MboI GATC 2 cut(s) 21, 221
MboII GAAGA 2 cut(s) 31, 170
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 106
MlyI GAGTC 3 cut(s) 131, 187, 223
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 3 cut(s) 118, 193, 270
MseI TTAA 4 cut(s) 27, 45, 110, 308
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 21, 221
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 3 cut(s) 131, 187, 222
PpsI GAGTC 3 cut(s) 131, 187, 222
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 129
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 4 cut(s) 27, 45, 110, 308
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 21, 221
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 3 cut(s) 131, 187, 223
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 106
SetI ASST 1 cut(s) 85
SfaNI GCATC 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
SsiI CCGC 1 cut(s) 91
SspI AATATT 1 cut(s) 172
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 108, 132
TatI WGTACW 1 cut(s) 163
Tru1I TTAA 4 cut(s) 27, 45, 110, 308
Tru9I TTAA 4 cut(s) 27, 45, 110, 308
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 17, 129, 161
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.