Rh2BG217500

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003579
Physical Location & Seq
Forward (+)
20887646 .. 20889937
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG217500.1

Sequence Viewer

Length: 555 bp
ATGACCTCCGCTTTGGATTTCAGCCCCAGCATCAGTGAGTCCCTCGGCGACGTTACCATTTTCACCGCTGCTGGAGACGCCGTCCAGTTCAAGGACCTCTGGGACCAGAACGAGGGGGTGGCTGCTGTTGCACTATTGAGGCACTTTGGATGCCCTTGCAGTTGGGAACTTGCTGCAACTCTAAAAGAATCAAAAGCGAAATTTGACTCAGCTGGTGTGAAGCTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCTCGTGTCCTTGCAGAACGGGCGTATAATATCTTGGGTTTATACTATGGATGGGGTCCAACATTCTTCAATCCAGCCATTATTGTAAAGATGTTGTCAAGATTTGGTGCTCTGCGGAAAGCTGTAAAAAACTATACGATTAAAGCCACTCCAGATGATAGAAGTGGTGTGTTGCAACAGGGAGGGATGTTTGTCTTCAAAGGGAAGCAGTTATTGTATGCTCGGAAAGACAAAGAGACAAGTGATCATGCCCCATTAGATGATATTTTGGATGTTTGCTGCAAAGTTCCAGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

184

Amino Acids

19.94

Weight (kDa)

8.3

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 61 - 163 7.7e-08 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 9, 66, 370
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 91, 112
AgsI TTSAA 3 cut(s) 91, 325, 454
AluBI AGCT 4 cut(s) 212, 223, 257, 377
AluI AGCT 4 cut(s) 212, 223, 257, 377
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 69, 485
ApeKI GCWGC 4 cut(s) 68, 122, 173, 534
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 27, 531
AspS9I GGNCC 3 cut(s) 94, 103, 311
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 3 cut(s) 94, 103, 311
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 4 cut(s) 55, 109, 160, 521
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 69, 485
BisI GCNGC 4 cut(s) 69, 123, 174, 535
BlsI GCNGC 4 cut(s) 70, 124, 175, 536
Bme18I GGWCC 3 cut(s) 94, 103, 311
BmgT120I GGNCC 3 cut(s) 94, 103, 311
BmiI GGNNCC 2 cut(s) 104, 312
BmsI GCATC 2 cut(s) 39, 140
BpiI GAAGAC 1 cut(s) 442
BpmI CTGGAG 2 cut(s) 93, 390
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 112
Bse1I ACTGG 2 cut(s) 85, 545
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 4 cut(s) 155, 311, 447, 532
BseLI CCNNNNNNNGG 2 cut(s) 91, 112
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 85, 545
BseXI GCAGC 4 cut(s) 55, 109, 160, 521
BseYI CCCAGC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 367
BslFI GGGAC 2 cut(s) 25, 116
BslI CCNNNNNNNGG 2 cut(s) 91, 112
BsmAI GTCTC 2 cut(s) 69, 485
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 25, 116
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 1 cut(s) 499
BspACI CCGC 3 cut(s) 9, 66, 370
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 104, 312
BsrI ACTGG 2 cut(s) 85, 545
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 499
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 4 cut(s) 155, 311, 447, 532
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 2 cut(s) 69, 485
BstMBI GATC 1 cut(s) 499
BstMWI GCNNNNNNNGC 3 cut(s) 77, 128, 275
BstV1I GCAGC 4 cut(s) 55, 109, 160, 521
BstV2I GAAGAC 1 cut(s) 442
BtsCI GGATG 4 cut(s) 155, 311, 447, 532
BtsIMutI CAGTG 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 94, 103, 311
CseI GACGC 1 cut(s) 86
CviAII CATG 1 cut(s) 503
CviJI RGCY 8 cut(s) 24, 122, 212, 223, 257, 332, 377, 401
CviKI_1 RGCY 8 cut(s) 24, 122, 212, 223, 257, 332, 377, 401
DdeI CTNAG 1 cut(s) 208
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
Eco47I GGWCC 3 cut(s) 94, 103, 311
EcoO109I RGGNCCY 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 1 cut(s) 506
FaiI YATR 6 cut(s) 282, 298, 303, 390, 474, 504
FaqI GGGAC 2 cut(s) 25, 116
FatI CATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 4 cut(s) 69, 123, 174, 535
FokI GGATG 4 cut(s) 162, 318, 454, 539
Fsp4HI GCNGC 4 cut(s) 69, 123, 174, 535
GluI GCNGC 4 cut(s) 69, 123, 174, 535
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 2 cut(s) 93, 390
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 506
HinfI GANTC 3 cut(s) 38, 188, 206
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 4 cut(s) 248, 354, 407, 552
Hpy99I CGWCG 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 6 cut(s) 131, 159, 176, 269, 430, 537
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 128, 275
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 1 cut(s) 499
Lsp1109I GCAGC 4 cut(s) 55, 109, 160, 521
LweI GCATC 2 cut(s) 39, 140
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 2 cut(s) 313, 442
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 2 cut(s) 200, 225
MlyI GAGTC 2 cut(s) 47, 200
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 6 cut(s) 16, 53, 106, 107, 132, 431
MseI TTAA 1 cut(s) 396
MspA1I CMGCKG 2 cut(s) 68, 212
MwoI GCNNNNNNNGC 3 cut(s) 77, 128, 275
NdeII GATC 1 cut(s) 499
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 2 cut(s) 104, 312
NmeAIII GCCGAG 1 cut(s) 24
PfeI GAWTC 1 cut(s) 188
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 70, 124, 175, 536
PleI GAGTC 2 cut(s) 46, 200
PpsI GAGTC 2 cut(s) 46, 200
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 104, 312
PspPI GGNCC 3 cut(s) 94, 103, 311
PspPPI RGGWCCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 4 cut(s) 69, 123, 174, 535
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 3 cut(s) 94, 103, 311
SchI GAGTC 2 cut(s) 47, 200
SduI GDGCHC 1 cut(s) 367
SetI ASST 7 cut(s) 8, 54, 99, 214, 225, 259, 379
SfaNI GCATC 2 cut(s) 39, 140
SinI GGWCC 3 cut(s) 94, 103, 311
Sse9I AATT 2 cut(s) 200, 225
SsiI CCGC 3 cut(s) 9, 66, 370
TaiI ACGT 1 cut(s) 54
TasI AATT 2 cut(s) 200, 225
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 40
TseI GCWGC 4 cut(s) 68, 122, 173, 534
TspRI CASTG 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 3 cut(s) 94, 103, 311
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.