Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003579

Physical Location & Seq

Genomic Coordinates Forward (+)

10618836 .. 10621564

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCCTAATCTCCACACAAACCCTAACCCTAAAATCCTTTCCTACCCTTTCTCATCCATCTATCTTTCCTACTCCCCAATCTCTCTCACTCTCACCTCCCAATCATCACTCCCTATCCCTCTCCACCCCAAATTCAACACCACGGTTCAGCGCCAGACGACATGTCGTCTCCAGAGCCACCGCGACCTCGGCCTCAGATTTCAGCCCCGACATAGGCGAGATCCTCGGTGACGTCAGCATTTACACCGCTGCTGGCGACTCCGTCCAGTTCAAGGACCTTTGGGACCAGAATGAGGGGGTGGCTGTTGTTGCACTATTGAGGCACTTTGGATGCCCTTGCTGTTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGAAAGATTTGACTCTGCTGGTGTGAAACTAATTGCTGTTGGTGTCGGTAGTCCTGATAAAGCGCGTATCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTCTATGCTGATACTGATCGTAAGGCGTATGATGTTTTGGGCTTATACTATGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTGTCAAGATTTGATGCCCTAAAGAAAGCTGTCAAAAACTATACCATTGAAGCCACTCCAGATGATAGAAGTAGTGTGTTACAACAGGGAGGGATGTTTGTCTTCAAAGGTAAGCAGCTATTGTATGCTCGGAAAGATGAAGGAACAGGTGATCATGCCCCTTTGGATGATATCTTAAATGTTTGCTGCAAAGTTCCTGTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

260

Amino Acids

28.13

Weight (kDa)

7.65

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	75 - 176	1.3e-06	AhpC/TSA family
AhpC-TSA_2	PF13911	122 - 238	1.8e-19	AhpC/TSA antioxidant enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65840
fragaria_vesca	FvH4_1g18230 FvH4_1g18230 FvH4_1g18250 FvH4_1g18251
malus_domestica	MD02G1189600.v1.1
prunus_persica	Prupe.6G216800_v2.0.a1
pyrus_communis	pycom02g15370
rosa_chinensis	RchiOBHm_Chr2g0108751 RchiOBHm_Chr2g0108761 RchiOBHm_Chr2g0108771
rosa_laevigata	RLG00000017689 RLG00000017690
rosa_multiflora	Rmu_co8430739.1_g000001 Rmu_sc0009410.1_g000001 Rmu_sc0010317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134820 Rroxscaffold_2G00134830 Rroxscaffold_2G00134840
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug02G0155700 Rorug02G0155800
rosa_samantha	Rh2AG205700 Rh2AG205900 Rh2AG206000 Rh2BG217500 Rh2CG208600 Rh2CG208900 Rh2DG211900 Rh2DG212300 Rh2DG212400
rosa_wichuraiana	Rw2G016370 Rw2G016390 Rw2G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccII	CGCG	2 cut(s)	185, 442
AciI	CCGC	2 cut(s)	183, 249
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	215, 274, 295
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	5 cut(s)	138, 274, 553, 623, 679
AhdI	GACNNNNNGTC	2 cut(s)	164, 167
AluBI	AGCT	4 cut(s)	362, 560, 602, 691
AluI	AGCT	4 cut(s)	362, 560, 602, 691
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	3, 192
ApeKI	GCWGC	3 cut(s)	251, 688, 759
ApoI	RAATTY	1 cut(s)	133
ArsI	GACNNNNNNTTYG	3 cut(s)	560, 592, 756
AspLEI	GCGC	2 cut(s)	155, 442
AspS9I	GGNCC	3 cut(s)	4, 277, 286
AsuHPI	GGTGA	3 cut(s)	87, 242, 734
AvaII	GGWCC	2 cut(s)	277, 286
BbsI	GAAGAC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	238, 700, 746
BccI	CCATC	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	455
BclI	TGATCA	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	252, 689, 760
BlsI	GCNGC	3 cut(s)	253, 690, 761
Bme18I	GGWCC	2 cut(s)	277, 286
BmeRI	GACNNNNNGTC	2 cut(s)	164, 167
BmgT120I	GGNCC	3 cut(s)	4, 277, 286
BmiI	GGNNCC	1 cut(s)	287
BmsI	GCATC	2 cut(s)	323, 577
BpiI	GAAGAC	1 cut(s)	667
BpmI	CTGGAG	2 cut(s)	157, 615
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	143, 189, 226, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 274, 295
Bse1I	ACTGG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	495
BseDI	CCNNGG	4 cut(s)	143, 189, 226, 471
BseGI	GGATG	4 cut(s)	55, 338, 672, 745
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	3 cut(s)	215, 274, 295
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	3 cut(s)	238, 700, 746
Bsh1236I	CGCG	2 cut(s)	185, 442
BshFI	GGCC	2 cut(s)	5, 194
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	215, 274, 295
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	5, 194
Bsp143I	GATC	3 cut(s)	222, 496, 724
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	2 cut(s)	183, 249
BspANI	GGCC	2 cut(s)	5, 194
BspCNI	CTCAG	1 cut(s)	209
BspFNI	CGCG	2 cut(s)	185, 442
BspLI	GGNNCC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	4 cut(s)	143, 189, 226, 471
BssMI	GATC	3 cut(s)	222, 496, 724
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	147, 459
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	196
BstDSI	CCRYGG	2 cut(s)	143, 471
BstEII	GGTNACC	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	55, 338, 672, 745
BstFNI	CGCG	2 cut(s)	185, 442
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	155, 442
BstKTI	GATC	3 cut(s)	225, 499, 727
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	3 cut(s)	222, 496, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 311
BstNSI	RCATGY	1 cut(s)	167
BstPI	GGTNACC	1 cut(s)	459
BstUI	CGCG	2 cut(s)	185, 442
BstV1I	GCAGC	3 cut(s)	238, 700, 746
BstV2I	GAAGAC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	5, 194
BtgI	CCRYGG	2 cut(s)	143, 471
BtsCI	GGATG	4 cut(s)	55, 338, 672, 745
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	2 cut(s)	155, 442
Cfr13I	GGNCC	3 cut(s)	4, 277, 286
CviAII	CATG	3 cut(s)	164, 472, 728
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	3 cut(s)	224, 498, 726
DpnII	GATC	3 cut(s)	222, 496, 724
DriI	GACNNNNNGTC	2 cut(s)	164, 167
Eam1105I	GACNNNNNGTC	2 cut(s)	164, 167
Eco130I	CCWWGG	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	745
Eco47I	GGWCC	2 cut(s)	277, 286
Eco57I	CTGAAG	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	459
EcoRV	GATATC	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	3 cut(s)	167, 475, 731
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	163, 471, 727
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	3 cut(s)	252, 689, 760
FokI	GGATG	4 cut(s)	42, 345, 679, 752
Fsp4HI	GCNGC	3 cut(s)	252, 689, 760
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	2 cut(s)	154, 441
GluI	GCNGC	3 cut(s)	252, 689, 760
GsuI	CTGGAG	2 cut(s)	157, 615
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	5, 194
HhaI	GCGC	2 cut(s)	155, 442
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	167, 475, 731
Hin6I	GCGC	2 cut(s)	153, 440
HinP1I	GCGC	2 cut(s)	153, 440
HinfI	GANTC	4 cut(s)	260, 371, 389, 476
HphI	GGTGA	3 cut(s)	87, 242, 734
Hpy188I	TCNGA	2 cut(s)	199, 705
Hpy188III	TCNNGA	5 cut(s)	174, 431, 579, 632, 777
HpyAV	CCTTC	1 cut(s)	707
HpyCH4III	ACNGT	2 cut(s)	147, 459
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	314, 452, 566, 762
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 311
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	167, 475, 731
HspAI	GCGC	2 cut(s)	153, 440
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	3 cut(s)	222, 496, 724
Lsp1109I	GCAGC	3 cut(s)	238, 700, 746
LweI	GCATC	2 cut(s)	323, 577
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	230, 459, 651
MalI	GATC	3 cut(s)	224, 498, 726
MboI	GATC	3 cut(s)	222, 496, 724
MboII	GAAGA	2 cut(s)	541, 667
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	2 cut(s)	133, 408
MlyI	GAGTC	2 cut(s)	254, 383
MnlI	CCTC	9 cut(s)	108, 131, 199, 205, 236, 289, 315, 491, 656
MseI	TTAA	1 cut(s)	749
MspA1I	CMGCKG	1 cut(s)	251
MvnI	CGCG	2 cut(s)	185, 442
MwoI	GCNNNNNNNGC	2 cut(s)	191, 311
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	3 cut(s)	222, 496, 724
NlaIII	CATG	3 cut(s)	167, 475, 731
NlaIV	GGNNCC	1 cut(s)	287
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	167
PciI	ACATGT	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	371, 476
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	253, 690, 761
PleI	GAGTC	2 cut(s)	254, 383
PpsI	GAGTC	2 cut(s)	254, 383
PpuMI	RGGWCCY	1 cut(s)	277
PscI	ACATGT	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	3 cut(s)	4, 277, 286
PspPPI	RGGWCCY	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	222
PsyI	GACNNNGTC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	749
SatI	GCNGC	3 cut(s)	252, 689, 760
Sau3AI	GATC	3 cut(s)	222, 496, 724
Sau96I	GGNCC	3 cut(s)	4, 277, 286
SchI	GAGTC	2 cut(s)	254, 383
SfaNI	GCATC	2 cut(s)	323, 577
SinI	GGWCC	2 cut(s)	277, 286
Sse9I	AATT	2 cut(s)	133, 408
SsiI	CCGC	2 cut(s)	183, 249
SspMI	CTAG	1 cut(s)	561
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	147, 459
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	541
TasI	AATT	2 cut(s)	133, 408
TfiI	GAWTC	2 cut(s)	371, 476
Tru1I	TTAA	1 cut(s)	749
Tru9I	TTAA	1 cut(s)	749
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	3 cut(s)	251, 688, 759
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	726
TspGWI	ACGGA	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	277, 286
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	1 cut(s)	561
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.