RchiOBHm_Chr2g0108771

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003579
Physical Location & Seq
Forward (+)
20153334 .. 20155486
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48263

Sequence Viewer

Length: 600 bp
ATGACCTCCGCTTTGGATTTCAGCCCCAGCATCAGTGAGTCCCTCGGCGACGTTACCATTTTCACCGCTGCTGGAGACGCCGTCCAGTTCAAGGACCTCTGGGACCAGAACGAGGGGGTGGTTGTTGTTGCACTATTGAGGCACTTTGGATGCCCTGGCAGTTGGGAACTTGCTGCAACTCTAAAAGAATCAAAAGCGAAATTTGACTCAGCTGGTGTGAAACTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCTTGTGTCCTTGCAGAACGGGTATTATTCTTTCCCTGTTTGGTTACCATTTCCCTTTATGCTGATCCTGATCGTAAGGCGTATAATATCTTGGGTTTATACTATGGATGGGGTCCAACATTCTTCAATCCAGCCATTATTTCAAGATTTGGTGCTCTGCGGAAAGCTGTAAAAAACTATACGATTAAAGCCACTCCAGATGATAGAAGTGGTGTGTTGCAACAGGGAGGGATGTTTGTCTTCAAAGGGAAGCAGTTATTGTATGCTCGGAAAGACAAAGAGACAAGTGATCATGCCCCATTAGATGATATTTTGGATGTTTGCTGCAAAGTTCCAGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

199

Amino Acids

21.6

Weight (kDa)

6.72

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 61 - 178 1.8e-17 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 9, 66, 415
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 91, 112
AgsI TTSAA 4 cut(s) 91, 382, 399, 499
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 3 cut(s) 212, 257, 422
AluI AGCT 3 cut(s) 212, 257, 422
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 2 cut(s) 69, 530
AlwI GGATC 1 cut(s) 314
ApeKI GCWGC 3 cut(s) 68, 173, 579
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 27, 576
AspS9I GGNCC 3 cut(s) 94, 103, 368
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 3 cut(s) 94, 103, 368
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 3 cut(s) 55, 160, 566
BccI CCATC 1 cut(s) 357
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 69, 530
BisI GCNGC 3 cut(s) 69, 174, 580
BlsI GCNGC 3 cut(s) 70, 175, 581
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 3 cut(s) 94, 103, 368
BmgT120I GGNCC 3 cut(s) 94, 103, 368
BmiI GGNNCC 2 cut(s) 104, 369
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 39, 140
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 2 cut(s) 93, 435
BsaBI GATNNNNATC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 43, 154
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 112
Bse1I ACTGG 2 cut(s) 85, 590
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 43, 154
BseGI GGATG 4 cut(s) 155, 368, 492, 577
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 91, 112
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 85, 590
BseXI GCAGC 3 cut(s) 55, 160, 566
BseYI CCCAGC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 412
BslFI GGGAC 2 cut(s) 25, 116
BslI CCNNNNNNNGG 2 cut(s) 91, 112
BsmAI GTCTC 2 cut(s) 69, 530
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 25, 116
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 3 cut(s) 319, 325, 544
BspACI CCGC 3 cut(s) 9, 66, 415
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 104, 369
BspPI GGATC 1 cut(s) 314
BsrI ACTGG 2 cut(s) 85, 590
BssECI CCNNGG 2 cut(s) 43, 154
BssMI GATC 3 cut(s) 319, 325, 544
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 208
BstEII GGTNACC 1 cut(s) 298
BstF5I GGATG 4 cut(s) 155, 368, 492, 577
BstKTI GATC 3 cut(s) 322, 328, 547
BstMAI GTCTC 2 cut(s) 69, 530
BstMBI GATC 3 cut(s) 319, 325, 544
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 156
BstPI GGTNACC 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 55, 160, 566
BstV2I GAAGAC 1 cut(s) 487
BtsCI GGATG 4 cut(s) 155, 368, 492, 577
BtsIMutI CAGTG 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 94, 103, 368
CseI GACGC 1 cut(s) 86
CviAII CATG 1 cut(s) 548
CviJI RGCY 6 cut(s) 24, 212, 257, 389, 422, 446
CviKI_1 RGCY 6 cut(s) 24, 212, 257, 389, 422, 446
DdeI CTNAG 1 cut(s) 208
DpnI GATC 3 cut(s) 321, 327, 546
DpnII GATC 3 cut(s) 319, 325, 544
Eco47I GGWCC 3 cut(s) 94, 103, 368
Eco91I GGTNACC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 1 cut(s) 551
FaiI YATR 7 cut(s) 315, 339, 355, 360, 435, 519, 549
FaqI GGGAC 2 cut(s) 25, 116
FatI CATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 3 cut(s) 69, 174, 580
FokI GGATG 4 cut(s) 162, 375, 499, 584
Fsp4HI GCNGC 3 cut(s) 69, 174, 580
GluI GCNGC 3 cut(s) 69, 174, 580
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 2 cut(s) 93, 435
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 551
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 3 cut(s) 38, 188, 206
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 5 cut(s) 248, 323, 399, 452, 597
Hpy99I CGWCG 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 131, 176, 269, 475, 582
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 319, 325, 544
Lsp1109I GCAGC 3 cut(s) 55, 160, 566
LweI GCATC 2 cut(s) 39, 140
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 52, 298
MalI GATC 3 cut(s) 321, 327, 546
MboI GATC 3 cut(s) 319, 325, 544
MboII GAAGA 2 cut(s) 370, 487
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 2 cut(s) 200, 225
MlyI GAGTC 2 cut(s) 47, 200
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 6 cut(s) 16, 53, 106, 107, 132, 476
MseI TTAA 1 cut(s) 441
MspA1I CMGCKG 2 cut(s) 68, 212
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 3 cut(s) 319, 325, 544
NlaIII CATG 1 cut(s) 551
NlaIV GGNNCC 2 cut(s) 104, 369
NmeAIII GCCGAG 1 cut(s) 24
PfeI GAWTC 1 cut(s) 188
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 70, 175, 581
PleI GAGTC 2 cut(s) 46, 200
PpsI GAGTC 2 cut(s) 46, 200
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 154
PspEI GGTNACC 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 104, 369
PspPI GGNCC 3 cut(s) 94, 103, 368
PspPPI RGGWCCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 3 cut(s) 69, 174, 580
Sau3AI GATC 3 cut(s) 319, 325, 544
Sau96I GGNCC 3 cut(s) 94, 103, 368
SchI GAGTC 2 cut(s) 47, 200
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 412
SetI ASST 6 cut(s) 8, 54, 99, 214, 259, 424
SfaNI GCATC 2 cut(s) 39, 140
SinI GGWCC 3 cut(s) 94, 103, 368
Sse9I AATT 2 cut(s) 200, 225
SsiI CCGC 3 cut(s) 9, 66, 415
StyD4I CCNGG 1 cut(s) 154
TaiI ACGT 1 cut(s) 54
TasI AATT 2 cut(s) 200, 225
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 40
TseI GCWGC 3 cut(s) 68, 173, 579
TspRI CASTG 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 3 cut(s) 94, 103, 368
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.