Rh2DG212400

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003579
Physical Location & Seq
Forward (+)
20162000 .. 20173681
11682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG212400.1

Sequence Viewer

Length: 549 bp
ATGACCTCCGCTTTGGATTTCAGCCCCAGCATCAGTGAGTCCCTCGGCGACGTTACCATTTTCACCGCTGCTGGAGACGCCGTCCAGTTCAAGGATCTCTGGGACCAGAACGAGGAGGTGGCTGTTGTTGCACTATTGAGGCACTTTGATGCCCTTGCAGCTGGTGTGAAGCTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCTCGTGTCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTTTATGCTGATCCTGATCGTAAGGCGTATAATATCTTGGGTTTATACTATGGATGGGGTCCAACATTCTTCAATCCAGCCATTATTGTAAAGATGTTGTCAAGATTTGGTGCTCTGCGGAAAGCTGTAAAAAACTATACGATTAAAGCCACTCCAGATGATAGAAGTGGTGTGTTGCAACAGGGAGGGATGTTTGTCTTCAAAGGGAAGCAGTTATTGTATGCTAGGAAAGACAAAGAGACAAGTGATCATGCCCCATTAGATGATATTTTGGATGTTTGCTGCAAAGTTCCAGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

182

Amino Acids

19.9

Weight (kDa)

6.1

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 50 - 161 5.8e-18 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 9, 66, 364
AclWI GGATC 2 cut(s) 102, 251
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 91, 112
AgsI TTSAA 3 cut(s) 91, 319, 448
AluBI AGCT 4 cut(s) 161, 172, 206, 371
AluI AGCT 4 cut(s) 161, 172, 206, 371
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 69, 479
AlwI GGATC 2 cut(s) 102, 251
ApeKI GCWGC 3 cut(s) 68, 158, 528
ArsI GACNNNNNNTTYG 2 cut(s) 27, 525
AspS9I GGNCC 2 cut(s) 103, 305
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 2 cut(s) 103, 305
BauI CACGAG 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 3 cut(s) 55, 170, 515
BccI CCATC 1 cut(s) 294
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 2 cut(s) 69, 479
BfaI CTAG 1 cut(s) 471
BisI GCNGC 3 cut(s) 69, 159, 529
BlsI GCNGC 3 cut(s) 70, 160, 530
Bme18I GGWCC 2 cut(s) 103, 305
BmgT120I GGNCC 2 cut(s) 103, 305
BmiI GGNNCC 2 cut(s) 104, 306
BmsI GCATC 2 cut(s) 39, 139
BpiI GAAGAC 1 cut(s) 436
BpmI CTGGAG 2 cut(s) 93, 384
BsaBI GATNNNNATC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 43, 237
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 112
Bse1I ACTGG 2 cut(s) 85, 539
Bse8I GATNNNNATC 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 43, 237
BseGI GGATG 3 cut(s) 305, 441, 526
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 91, 112
BseNI ACTGG 2 cut(s) 85, 539
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 3 cut(s) 55, 170, 515
BseYI CCCAGC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 361
BslFI GGGAC 2 cut(s) 25, 116
BslI CCNNNNNNNGG 2 cut(s) 91, 112
BsmAI GTCTC 2 cut(s) 69, 479
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 25, 116
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 4 cut(s) 94, 256, 262, 493
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 3 cut(s) 9, 66, 364
BspLI GGNNCC 2 cut(s) 104, 306
BspPI GGATC 2 cut(s) 102, 251
BsrI ACTGG 2 cut(s) 85, 539
BssECI CCNNGG 2 cut(s) 43, 237
BssMI GATC 4 cut(s) 94, 256, 262, 493
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 237
BstEII GGTNACC 1 cut(s) 225
BstF5I GGATG 3 cut(s) 305, 441, 526
BstKTI GATC 4 cut(s) 97, 259, 265, 496
BstMAI GTCTC 2 cut(s) 69, 479
BstMBI GATC 4 cut(s) 94, 256, 262, 493
BstMWI GCNNNNNNNGC 3 cut(s) 77, 128, 158
BstPI GGTNACC 1 cut(s) 225
BstV1I GCAGC 3 cut(s) 55, 170, 515
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 305, 441, 526
BtsIMutI CAGTG 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 103, 305
CseI GACGC 1 cut(s) 86
CviAII CATG 2 cut(s) 238, 497
CviJI RGCY 8 cut(s) 24, 122, 161, 172, 206, 326, 371, 395
CviKI_1 RGCY 8 cut(s) 24, 122, 161, 172, 206, 326, 371, 395
DpnI GATC 4 cut(s) 96, 258, 264, 495
DpnII GATC 4 cut(s) 94, 256, 262, 493
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 103, 305
Eco91I GGTNACC 1 cut(s) 225
EcoO65I GGTNACC 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 2 cut(s) 241, 500
FaiI YATR 8 cut(s) 239, 252, 276, 292, 297, 384, 468, 498
FaqI GGGAC 2 cut(s) 25, 116
FatI CATG 2 cut(s) 237, 496
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 3 cut(s) 69, 159, 529
FokI GGATG 3 cut(s) 312, 448, 533
Fsp4HI GCNGC 3 cut(s) 69, 159, 529
FspBI CTAG 1 cut(s) 471
GluI GCNGC 3 cut(s) 69, 159, 529
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 2 cut(s) 93, 384
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 241, 500
HinfI GANTC 2 cut(s) 38, 242
HphI GGTGA 1 cut(s) 55
Hpy188III TCNNGA 5 cut(s) 197, 260, 348, 401, 546
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 131, 158, 218, 424, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 128, 158
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 241, 500
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 4 cut(s) 94, 256, 262, 493
Lsp1109I GCAGC 3 cut(s) 55, 170, 515
LweI GCATC 2 cut(s) 39, 139
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 52, 225
MalI GATC 4 cut(s) 96, 258, 264, 495
MboI GATC 4 cut(s) 94, 256, 262, 493
MboII GAAGA 2 cut(s) 307, 436
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 6 cut(s) 16, 53, 106, 109, 132, 425
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 2 cut(s) 68, 161
MwoI GCNNNNNNNGC 3 cut(s) 77, 128, 158
NcoI CCATGG 1 cut(s) 237
NdeII GATC 4 cut(s) 94, 256, 262, 493
NlaIII CATG 2 cut(s) 241, 500
NlaIV GGNNCC 2 cut(s) 104, 306
NmeAIII GCCGAG 1 cut(s) 24
PfeI GAWTC 1 cut(s) 242
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 70, 160, 530
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspEI GGTNACC 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 104, 306
PspPI GGNCC 2 cut(s) 103, 305
PsuI RGATCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 3 cut(s) 69, 159, 529
Sau3AI GATC 4 cut(s) 94, 256, 262, 493
Sau96I GGNCC 2 cut(s) 103, 305
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 361
SetI ASST 7 cut(s) 8, 54, 120, 163, 174, 208, 373
SfaNI GCATC 2 cut(s) 39, 139
SinI GGWCC 2 cut(s) 103, 305
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 1 cut(s) 174
SsiI CCGC 3 cut(s) 9, 66, 364
SspMI CTAG 1 cut(s) 471
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 1 cut(s) 54
TasI AATT 1 cut(s) 174
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 40
TseI GCWGC 3 cut(s) 68, 158, 528
TspRI CASTG 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 103, 305
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.