Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003579

Physical Location & Seq

Genomic Coordinates Forward (+)

20147738 .. 20150943

Gene Structure 3206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48262

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCCTAATCCCCGCACAAACCCTAACCCTAAAATCCCCTCCTACCCTTTCTCCTCCTTCTCATCCATCTACCTTTCCCACTTCCCAATCTCTCTGCCTCTCACCTCCCACTTCTCACTCTCTCTCCCTTTTTTCCACCCCTAATTCAACACCACGGTTCAGCGCTAGACGACATGTCGTCTCCAGAGCCACCGCGACCTCCGCCTCGGATTTCAGCCCCGCCATCGGTGAGATCCTCGGCGACGTCAGAATTTTCACCGCTGCTGGAGACTCCGTCCAGTTCAAGGACCTCTGGGACCAGAATGAGGGGGTGGCTGTTGTTGCACTACTGAGGCACTTTGGATGCCCTTGCTGTTGGGAACTTGCTTCAGCTCTAAAAGAATCGAAAGAAAGATTTGAATCAGCTGGTGTGAAGCTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCGCGTATCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTCTATGCCGATACTGATCGTAAGGCGTATGATGTTTTGGGCTTATACTATGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTGTCAAGATTTGATGCTCTGCAGAAAGCTGTCAAAAACTATACCATTGAAGCCACTCCAGATGATAGAAGTAGTGTGTTACAACAGGGAGGGATGTTTGTCTTCAAAGGTAAGCAGCTATTGTATGCTCGGAAAGACGAAGGGACAGGTGATCATGCTCCCTTGGATGATATCTTAAATGTTTGCTGCAAAGTTCCTGTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

263

Amino Acids

28.44

Weight (kDa)

8.18

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	86 - 180	1.2e-06	AhpC/TSA family
AhpC-TSA_2	PF13911	126 - 242	4.1e-19	AhpC/TSA antioxidant enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65840
fragaria_vesca	FvH4_1g18230 FvH4_1g18230 FvH4_1g18250 FvH4_1g18251
malus_domestica	MD02G1189600.v1.1
prunus_persica	Prupe.6G216800_v2.0.a1
pyrus_communis	pycom02g15370
rosa_chinensis	RchiOBHm_Chr2g0108751 RchiOBHm_Chr2g0108761 RchiOBHm_Chr2g0108771
rosa_laevigata	RLG00000017689 RLG00000017690
rosa_multiflora	Rmu_co8430739.1_g000001 Rmu_sc0009410.1_g000001 Rmu_sc0010317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134820 Rroxscaffold_2G00134830 Rroxscaffold_2G00134840
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug02G0155700 Rorug02G0155800
rosa_samantha	Rh2AG205700 Rh2AG205900 Rh2AG206000 Rh2BG217500 Rh2CG208600 Rh2CG208900 Rh2DG211900 Rh2DG212300 Rh2DG212400
rosa_wichuraiana	Rw2G016370 Rw2G016390 Rw2G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
AccII	CGCG	2 cut(s)	197, 454
AciI	CCGC	5 cut(s)	15, 195, 204, 222, 261
AclWI	GGATC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	246
AfeI	AGCGCT	1 cut(s)	166
AfiI	CCNNNNNNNGG	3 cut(s)	227, 286, 307
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	6 cut(s)	150, 286, 401, 565, 635, 691
AhdI	GACNNNNNGTC	2 cut(s)	176, 179
AluBI	AGCT	6 cut(s)	374, 407, 418, 572, 614, 703
AluI	AGCT	6 cut(s)	374, 407, 418, 572, 614, 703
Alw26I	GTCTC	2 cut(s)	187, 264
AlwI	GGATC	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	263, 700, 771
ApoI	RAATTY	1 cut(s)	252
ArsI	GACNNNNNNTTYG	3 cut(s)	572, 604, 768
AspLEI	GCGC	2 cut(s)	167, 454
AspS9I	GGNCC	3 cut(s)	4, 289, 298
AsuHPI	GGTGA	4 cut(s)	96, 242, 250, 746
AvaII	GGWCC	2 cut(s)	289, 298
BbsI	GAAGAC	1 cut(s)	679
BbvI	GCAGC	3 cut(s)	250, 712, 758
BccI	CCATC	2 cut(s)	76, 233
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	2 cut(s)	187, 264
BfaI	CTAG	2 cut(s)	168, 573
BfmI	CTRYAG	1 cut(s)	605
BfoI	RGCGCY	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	3 cut(s)	264, 701, 772
BlsI	GCNGC	3 cut(s)	265, 702, 773
Bme18I	GGWCC	2 cut(s)	289, 298
BmeRI	GACNNNNNGTC	2 cut(s)	176, 179
BmgT120I	GGNCC	3 cut(s)	4, 289, 298
BmiI	GGNNCC	1 cut(s)	299
BmsI	GCATC	2 cut(s)	335, 589
BpiI	GAAGAC	1 cut(s)	679
BpmI	CTGGAG	3 cut(s)	169, 288, 627
BsaBI	GATNNNNATC	2 cut(s)	400, 507
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	5 cut(s)	155, 207, 238, 483, 747
BsaXI	ACNNNNNCTCC	6 cut(s)	37, 67, 110, 140, 261, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 286, 307
Bse1I	ACTGG	1 cut(s)	280
Bse8I	GATNNNNATC	2 cut(s)	400, 507
BseDI	CCNNGG	5 cut(s)	155, 207, 238, 483, 747
BseGI	GGATG	4 cut(s)	64, 350, 684, 757
BseJI	GATNNNNATC	2 cut(s)	400, 507
BseLI	CCNNNNNNNGG	3 cut(s)	227, 286, 307
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	250, 712, 758
Bsh1236I	CGCG	2 cut(s)	197, 454
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	311, 742
BslI	CCNNNNNNNGG	3 cut(s)	227, 286, 307
BsmAI	GTCTC	2 cut(s)	187, 264
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	311, 742
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	234, 508, 736
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	5 cut(s)	15, 195, 204, 222, 261
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	324
BspFNI	CGCG	2 cut(s)	197, 454
BspLI	GGNNCC	1 cut(s)	299
BspMAI	CTGCAG	1 cut(s)	609
BspPI	GGATC	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	5 cut(s)	155, 207, 238, 483, 747
BssMI	GATC	3 cut(s)	234, 508, 736
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	483, 747
Bst4CI	ACNGT	2 cut(s)	159, 471
BstACI	GRCGYC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	2 cut(s)	155, 483
BstEII	GGTNACC	1 cut(s)	471
BstF5I	GGATG	4 cut(s)	64, 350, 684, 757
BstFNI	CGCG	2 cut(s)	197, 454
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 454
BstKTI	GATC	3 cut(s)	237, 511, 739
BstMAI	GTCTC	2 cut(s)	187, 264
BstMBI	GATC	3 cut(s)	234, 508, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 323
BstNSI	RCATGY	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	471
BstSFI	CTRYAG	1 cut(s)	605
BstUI	CGCG	2 cut(s)	197, 454
BstV1I	GCAGC	3 cut(s)	250, 712, 758
BstV2I	GAAGAC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	155, 483
BtsCI	GGATG	4 cut(s)	64, 350, 684, 757
CfoI	GCGC	2 cut(s)	167, 454
Cfr13I	GGNCC	3 cut(s)	4, 289, 298
CviAII	CATG	3 cut(s)	176, 484, 740
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	3 cut(s)	236, 510, 738
DpnII	GATC	3 cut(s)	234, 508, 736
DriI	GACNNNNNGTC	2 cut(s)	176, 179
Eam1105I	GACNNNNNGTC	2 cut(s)	176, 179
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	483, 747
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	2 cut(s)	289, 298
Eco47III	AGCGCT	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	471
EcoO109I	RGGNCCY	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	471
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	2 cut(s)	483, 747
ErhI	CCWWGG	2 cut(s)	483, 747
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	3 cut(s)	179, 487, 743
FaiI	YATR	9 cut(s)	177, 485, 498, 522, 538, 543, 627, 711, 741
FaqI	GGGAC	2 cut(s)	311, 742
FatI	CATG	3 cut(s)	175, 483, 739
FauI	CCCGC	2 cut(s)	22, 229
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	3 cut(s)	264, 701, 772
FokI	GGATG	4 cut(s)	51, 357, 691, 764
Fsp4HI	GCNGC	3 cut(s)	264, 701, 772
FspBI	CTAG	2 cut(s)	168, 573
GlaI	GCGC	2 cut(s)	166, 453
GluI	GCNGC	3 cut(s)	264, 701, 772
GsuI	CTGGAG	3 cut(s)	169, 288, 627
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	167, 454
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	179, 487, 743
Hin6I	GCGC	2 cut(s)	165, 452
HinP1I	GCGC	2 cut(s)	165, 452
HinfI	GANTC	4 cut(s)	272, 383, 401, 488
HphI	GGTGA	4 cut(s)	96, 242, 250, 746
Hpy188I	TCNGA	3 cut(s)	211, 251, 717
Hpy188III	TCNNGA	5 cut(s)	186, 443, 591, 644, 789
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	69, 719
HpyCH4III	ACNGT	2 cut(s)	159, 471
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	5 cut(s)	326, 464, 578, 607, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 323
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	179, 487, 743
HspAI	GCGC	2 cut(s)	165, 452
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	3 cut(s)	234, 508, 736
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	3 cut(s)	250, 712, 758
LweI	GCATC	2 cut(s)	335, 589
MaeI	CTAG	2 cut(s)	168, 573
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	471, 663
MalI	GATC	3 cut(s)	236, 510, 738
MboI	GATC	3 cut(s)	234, 508, 736
MboII	GAAGA	2 cut(s)	553, 679
MflI	RGATCY	1 cut(s)	234
MluCI	AATT	3 cut(s)	145, 252, 420
MlyI	GAGTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	761
MspA1I	CMGCKG	2 cut(s)	263, 407
MvnI	CGCG	2 cut(s)	197, 454
MwoI	GCNNNNNNNGC	2 cut(s)	203, 323
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	234, 508, 736
NlaIII	CATG	3 cut(s)	179, 487, 743
NlaIV	GGNNCC	1 cut(s)	299
NmeAIII	GCCGAG	1 cut(s)	219
NspI	RCATGY	1 cut(s)	179
PciI	ACATGT	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	383, 401, 488
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	265, 702, 773
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	289
PscI	ACATGT	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	3 cut(s)	4, 289, 298
PspPPI	RGGWCCY	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	234
PsyI	GACNNNGTC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	761
SatI	GCNGC	3 cut(s)	264, 701, 772
Sau3AI	GATC	3 cut(s)	234, 508, 736
Sau96I	GGNCC	3 cut(s)	4, 289, 298
SchI	GAGTC	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	335, 589
SfcI	CTRYAG	1 cut(s)	605
SinI	GGWCC	2 cut(s)	289, 298
Sse9I	AATT	3 cut(s)	145, 252, 420
SsiI	CCGC	5 cut(s)	15, 195, 204, 222, 261
SspMI	CTAG	2 cut(s)	168, 573
StyI	CCWWGG	2 cut(s)	483, 747
TaaI	ACNGT	2 cut(s)	159, 471
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	386, 553
TasI	AATT	3 cut(s)	145, 252, 420
TfiI	GAWTC	3 cut(s)	383, 401, 488
Tru1I	TTAA	1 cut(s)	761
Tru9I	TTAA	1 cut(s)	761
TseI	GCWGC	3 cut(s)	263, 700, 771
TspGWI	ACGGA	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	289, 298
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	2 cut(s)	168, 573
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.