Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010317.1

Orthogroup ID

OG0003579

Physical Location & Seq

Genomic Coordinates Reverse (-)

4554 .. 7302

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010317.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggccctaatccccacacaaaccctgaccctaaaatcccctcctaccctttctcctccttctcatccatctacctttcccaccacttcccagtctctctccctctcacctcccactcctcactctctctcccttttctccacccttaattcaacaccacggttcagcgctagacgacatgtcgtctccagagccaccgcgacctccgcctcggatttcagccccgccatcggtgagatcctcggcgacgtcagaattttcagcgctgctggagactccgtccagttcaaggacctctgggaccagaatgagggggtggctgttgttgcactactgaggcactttggatgcccttgctgttgggaacttgcttcagctctaaaagaatcgaaagaaagatttgaatcagctggtgtgaagctaattgctgttggtgttggtagtcctgataaagcacgtatccttgcagaacggttaccatttcccatggattccctctatgccgatactgatcgtaaggcgtatgatgttttgggcttatactatggattgggtcgaacattcttcaatccagctagtgcaaaggtgttgtcaagatttgatgctctgcagaaagctgtcaaaaactataccattgaagccactccagatgatagaagtagtgtgttacaacagggagggatgtttgtcttcaaaggaaagcagctattgtatggtcggaaagacgaagggacaggtgatcatgctcccttggatgatatcttaaatgtttgctgcaaagttcctgtctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

264

Amino Acids

28.55

Weight (kDa)

8.24

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65840
fragaria_vesca	FvH4_1g18230 FvH4_1g18230 FvH4_1g18250 FvH4_1g18251
malus_domestica	MD02G1189600.v1.1
prunus_persica	Prupe.6G216800_v2.0.a1
pyrus_communis	pycom02g15370
rosa_chinensis	RchiOBHm_Chr2g0108751 RchiOBHm_Chr2g0108761 RchiOBHm_Chr2g0108771
rosa_laevigata	RLG00000017689 RLG00000017690
rosa_multiflora	Rmu_co8430739.1_g000001 Rmu_sc0009410.1_g000001 Rmu_sc0010317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134820 Rroxscaffold_2G00134830 Rroxscaffold_2G00134840
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug02G0155700 Rorug02G0155800
rosa_samantha	Rh2AG205700 Rh2AG205900 Rh2AG206000 Rh2BG217500 Rh2CG208600 Rh2CG208900 Rh2DG211900 Rh2DG212300 Rh2DG212400
rosa_wichuraiana	Rw2G016370 Rw2G016390 Rw2G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	198, 207, 225
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	249
AfeI	AGCGCT	2 cut(s)	169, 265
AfiI	CCNNNNNNNGG	3 cut(s)	230, 289, 310
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	6 cut(s)	153, 289, 404, 568, 638, 694
AhdI	GACNNNNNGTC	2 cut(s)	179, 182
AluBI	AGCT	6 cut(s)	377, 410, 421, 575, 617, 706
AluI	AGCT	6 cut(s)	377, 410, 421, 575, 617, 706
Alw26I	GTCTC	3 cut(s)	99, 190, 267
AlwI	GGATC	1 cut(s)	232
Aor51HI	AGCGCT	2 cut(s)	169, 265
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	266, 703, 774
ApoI	RAATTY	1 cut(s)	255
ArsI	GACNNNNNNTTYG	3 cut(s)	575, 607, 771
AspLEI	GCGC	2 cut(s)	170, 266
AspS9I	GGNCC	3 cut(s)	4, 292, 301
AsuHPI	GGTGA	3 cut(s)	99, 245, 749
AvaII	GGWCC	2 cut(s)	292, 301
BbsI	GAAGAC	1 cut(s)	682
BbvI	GCAGC	3 cut(s)	253, 715, 761
BccI	CCATC	2 cut(s)	76, 236
BciVI	GTATCC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	739
BcoDI	GTCTC	3 cut(s)	99, 190, 267
BfaI	CTAG	2 cut(s)	171, 576
BfmI	CTRYAG	1 cut(s)	608
BfoI	RGCGCY	2 cut(s)	171, 267
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	3 cut(s)	267, 704, 775
BlsI	GCNGC	3 cut(s)	268, 705, 776
Bme18I	GGWCC	2 cut(s)	292, 301
BmeRI	GACNNNNNGTC	2 cut(s)	179, 182
BmgT120I	GGNCC	3 cut(s)	4, 292, 301
BmiI	GGNNCC	1 cut(s)	302
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	338, 592
BmuI	ACTGGG	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	682
BpmI	CTGGAG	3 cut(s)	172, 291, 630
BsaAI	YACGTR	1 cut(s)	458
BsaBI	GATNNNNATC	2 cut(s)	403, 510
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	5 cut(s)	158, 210, 241, 486, 750
BsaXI	ACNNNNNCTCC	6 cut(s)	37, 67, 113, 143, 264, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 289, 310
Bse1I	ACTGG	2 cut(s)	91, 283
Bse8I	GATNNNNATC	2 cut(s)	403, 510
BseDI	CCNNGG	5 cut(s)	158, 210, 241, 486, 750
BseGI	GGATG	4 cut(s)	64, 353, 687, 760
BseJI	GATNNNNATC	2 cut(s)	403, 510
BseLI	CCNNNNNNNGG	3 cut(s)	230, 289, 310
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	91, 283
BseRI	GAGGAG	2 cut(s)	45, 108
BseXI	GCAGC	3 cut(s)	253, 715, 761
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	314, 745
BslI	CCNNNNNNNGG	3 cut(s)	230, 289, 310
BsmAI	GTCTC	3 cut(s)	99, 190, 267
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	314, 745
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	237, 511, 739
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	3 cut(s)	198, 207, 225
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	302
BspMAI	CTGCAG	1 cut(s)	612
BspPI	GGATC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	91, 283
BssECI	CCNNGG	5 cut(s)	158, 210, 241, 486, 750
BssMI	GATC	3 cut(s)	237, 511, 739
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	486, 750
Bst4CI	ACNGT	2 cut(s)	162, 474
BstACI	GRCGYC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	458
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	2 cut(s)	158, 486
BstEII	GGTNACC	1 cut(s)	474
BstF5I	GGATG	4 cut(s)	64, 353, 687, 760
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	2 cut(s)	171, 267
BstHHI	GCGC	2 cut(s)	170, 266
BstKTI	GATC	3 cut(s)	240, 514, 742
BstMAI	GTCTC	3 cut(s)	99, 190, 267
BstMBI	GATC	3 cut(s)	237, 511, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 326
BstNSI	RCATGY	1 cut(s)	182
BstPI	GGTNACC	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	608
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	253, 715, 761
BstV2I	GAAGAC	1 cut(s)	682
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	158, 486
BtsCI	GGATG	4 cut(s)	64, 353, 687, 760
CfoI	GCGC	2 cut(s)	170, 266
Cfr13I	GGNCC	3 cut(s)	4, 292, 301
CviAII	CATG	3 cut(s)	179, 487, 743
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	3 cut(s)	239, 513, 741
DpnII	GATC	3 cut(s)	237, 511, 739
DriI	GACNNNNNGTC	2 cut(s)	179, 182
Eam1105I	GACNNNNNGTC	2 cut(s)	179, 182
EciI	GGCGGA	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	486, 750
Eco32I	GATATC	1 cut(s)	760
Eco47I	GGWCC	2 cut(s)	292, 301
Eco47III	AGCGCT	2 cut(s)	169, 265
Eco57I	CTGAAG	1 cut(s)	357
Eco91I	GGTNACC	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	760
EcoT14I	CCWWGG	2 cut(s)	486, 750
ErhI	CCWWGG	2 cut(s)	486, 750
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	3 cut(s)	182, 490, 746
FaiI	YATR	9 cut(s)	180, 488, 501, 525, 541, 546, 630, 714, 744
FaqI	GGGAC	2 cut(s)	314, 745
FatI	CATG	3 cut(s)	178, 486, 742
FauI	CCCGC	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	739
Fnu4HI	GCNGC	3 cut(s)	267, 704, 775
FokI	GGATG	4 cut(s)	51, 360, 694, 767
Fsp4HI	GCNGC	3 cut(s)	267, 704, 775
FspBI	CTAG	2 cut(s)	171, 576
GlaI	GCGC	2 cut(s)	169, 265
GluI	GCNGC	3 cut(s)	267, 704, 775
GsuI	CTGGAG	3 cut(s)	172, 291, 630
HaeII	RGCGCY	2 cut(s)	171, 267
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	170, 266
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	182, 490, 746
Hin6I	GCGC	2 cut(s)	168, 264
HinP1I	GCGC	2 cut(s)	168, 264
HinfI	GANTC	4 cut(s)	275, 386, 404, 491
HphI	GGTGA	3 cut(s)	99, 245, 749
Hpy188I	TCNGA	3 cut(s)	214, 254, 720
Hpy188III	TCNNGA	5 cut(s)	189, 446, 594, 647, 792
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	69, 722
HpyCH4III	ACNGT	2 cut(s)	162, 474
HpyCH4IV	ACGT	2 cut(s)	249, 457
HpyCH4V	TGCA	5 cut(s)	329, 467, 581, 610, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 326
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	249, 457
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	182, 490, 746
HspAI	GCGC	2 cut(s)	168, 264
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	3 cut(s)	237, 511, 739
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	3 cut(s)	253, 715, 761
LweI	GCATC	2 cut(s)	338, 592
MaeI	CTAG	2 cut(s)	171, 576
MaeII	ACGT	2 cut(s)	249, 457
MaeIII	GTNAC	2 cut(s)	474, 666
MalI	GATC	3 cut(s)	239, 513, 741
MboI	GATC	3 cut(s)	237, 511, 739
MboII	GAAGA	2 cut(s)	556, 682
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	3 cut(s)	148, 255, 423
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	698
MseI	TTAA	2 cut(s)	147, 764
MspA1I	CMGCKG	1 cut(s)	410
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	206, 326
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	3 cut(s)	237, 511, 739
NlaIII	CATG	3 cut(s)	182, 490, 746
NlaIV	GGNNCC	1 cut(s)	302
NmeAIII	GCCGAG	1 cut(s)	222
NspI	RCATGY	1 cut(s)	182
PciI	ACATGT	1 cut(s)	178
PfeI	GAWTC	3 cut(s)	386, 404, 491
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	268, 705, 776
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	458
PpuMI	RGGWCCY	1 cut(s)	292
PscI	ACATGT	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	3 cut(s)	4, 292, 301
PspPPI	RGGWCCY	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	237
PsyI	GACNNNGTC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	147, 764
SatI	GCNGC	3 cut(s)	267, 704, 775
Sau3AI	GATC	3 cut(s)	237, 511, 739
Sau96I	GGNCC	3 cut(s)	4, 292, 301
SchI	GAGTC	1 cut(s)	269
SfaNI	GCATC	2 cut(s)	338, 592
SfcI	CTRYAG	1 cut(s)	608
SinI	GGWCC	2 cut(s)	292, 301
Sse9I	AATT	3 cut(s)	148, 255, 423
SsiI	CCGC	3 cut(s)	198, 207, 225
SspMI	CTAG	2 cut(s)	171, 576
StyI	CCWWGG	2 cut(s)	486, 750
TaaI	ACNGT	2 cut(s)	162, 474
TaiI	ACGT	2 cut(s)	252, 460
TaqI	TCGA	2 cut(s)	389, 556
TasI	AATT	3 cut(s)	148, 255, 423
TfiI	GAWTC	3 cut(s)	386, 404, 491
Tru1I	TTAA	2 cut(s)	147, 764
Tru9I	TTAA	2 cut(s)	147, 764
TseI	GCWGC	3 cut(s)	266, 703, 774
TspGWI	ACGGA	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	292, 301
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	2 cut(s)	171, 576
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.