Rroxscaffold_2G00134820

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003579
Physical Location & Seq
Reverse (-)
72348110 .. 72350415
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134820.1

Sequence Viewer

Length: 459 bp
ATGACCTCGGCTTTGGATTTCAGCCCCAGCATCAGCGACGCCGTCCAGTTCAAGGACCTCTGGGACCAGAACGAGTTGGGAACTTGCTGCAAGTCTGCAACTCTAAAAGAATCAAAAGCGAAATTTGACTCAGCTGGTGTGAAACTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCTCGTGTCCTTGCAGAACGGTTACCATTCCCCATGGATTCCCTTTATGCTGATCCTGATCGTAAGGCGTATAATATTTTGGGTTTATACTATGGATGGGGTCCAACATTCTTCAATCCAGTCATTATTGTAAATATGTTGTCAAGATTTGGTGTTCTGCGGAAAGCTGTAAAAAACTATACGATTAAAGCCACTCCAGATGATAGAAGTGGTGTGTTGCAACAGGGAGGGATGTTTGTCTTCAAAGGGAAGCAGTTATTGTATGCGCGGAAAGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

152

Amino Acids

16.84

Weight (kDa)

9.44

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 35 - 151 1.3e-19 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 445
AciI CCGC 2 cut(s) 337, 445
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 3 cut(s) 52, 292, 421
AluBI AGCT 3 cut(s) 134, 179, 344
AluI AGCT 3 cut(s) 134, 179, 344
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 1 cut(s) 27
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 3 cut(s) 55, 64, 278
AvaII GGWCC 3 cut(s) 55, 64, 278
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 267
BceAI ACGGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme18I GGWCC 3 cut(s) 55, 64, 278
BmgT120I GGNCC 3 cut(s) 55, 64, 278
BmiI GGNNCC 2 cut(s) 65, 279
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 6, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 46, 296
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 6, 210
BseGI GGATG 2 cut(s) 278, 414
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 46, 296
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 445
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 229, 235
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 2 cut(s) 337, 445
BspCNI CTCAG 1 cut(s) 143
BspFNI CGCG 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 65, 279
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 46, 296
BssECI CCNNGG 2 cut(s) 6, 210
BssMI GATC 2 cut(s) 229, 235
BssNI GRCGYC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 130
BstDSI CCRYGG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 198
BstF5I GGATG 2 cut(s) 278, 414
BstFNI CGCG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 2 cut(s) 232, 238
BstMBI GATC 2 cut(s) 229, 235
BstPI GGTNACC 1 cut(s) 198
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 409
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 278, 414
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 3 cut(s) 55, 64, 278
CseI GACGC 1 cut(s) 47
CviAII CATG 1 cut(s) 211
CviJI RGCY 6 cut(s) 11, 24, 134, 179, 344, 368
CviKI_1 RGCY 6 cut(s) 11, 24, 134, 179, 344, 368
DdeI CTNAG 1 cut(s) 130
DpnI GATC 2 cut(s) 231, 237
DpnII GATC 2 cut(s) 229, 235
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 3 cut(s) 55, 64, 278
Eco91I GGTNACC 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 214
FaiI YATR 8 cut(s) 212, 225, 249, 265, 270, 314, 357, 441
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 2 cut(s) 285, 421
Fsp4HI GCNGC 1 cut(s) 88
GlaI GCGC 1 cut(s) 444
GluI GCNGC 1 cut(s) 88
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 357
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 445
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HinfI GANTC 3 cut(s) 110, 128, 215
Hpy188III TCNNGA 4 cut(s) 170, 233, 321, 374
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 90, 98, 191, 397
HpyF3I CTNAG 1 cut(s) 130
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 443
Kzo9I GATC 2 cut(s) 229, 235
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 198
MalI GATC 2 cut(s) 231, 237
MboI GATC 2 cut(s) 229, 235
MboII GAAGA 2 cut(s) 280, 409
MluCI AATT 2 cut(s) 122, 147
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 3 cut(s) 16, 68, 398
MseI TTAA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 134
MvnI CGCG 1 cut(s) 445
NcoI CCATGG 1 cut(s) 210
NdeII GATC 2 cut(s) 229, 235
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 65, 279
PfeI GAWTC 2 cut(s) 110, 215
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 89
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspEI GGTNACC 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 65, 279
PspPI GGNCC 3 cut(s) 55, 64, 278
PspPPI RGGWCCY 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 229, 235
Sau96I GGNCC 3 cut(s) 55, 64, 278
SchI GAGTC 1 cut(s) 122
SetI ASST 5 cut(s) 8, 60, 136, 181, 346
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 3 cut(s) 55, 64, 278
Sse9I AATT 2 cut(s) 122, 147
SsiI CCGC 2 cut(s) 337, 445
SspI AATATT 1 cut(s) 253
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 198
TasI AATT 2 cut(s) 122, 147
TfiI GAWTC 2 cut(s) 110, 215
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseI GCWGC 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 41
VpaK11BI GGWCC 3 cut(s) 55, 64, 278
XapI RAATTY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.