Rorug02G0155700

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003579
Physical Location & Seq
Reverse (-)
13896559 .. 13899144
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0155700.1

Sequence Viewer

Length: 414 bp
ATGGGTTGTGTTATGCATAATTATGAGGGTAGTTTCATAGCTAGACAGATGAAGCCATATGCTCTACTCACGTCACCATTTCATGCCGAATTGTTAGCACTTCGAGACGGCATTCTGCTAGCTCAGTCTTTGCACCATGAAGAGGTAATTTTCGAAAGTGATTGCGCACTTTTGGTTCAAGCTATTAACTCTCCTTCTCAAGATTTGTCTACTATGAATTTGTTGATTGAGGAAGTTAGGCAATTGTTGCAAGGCCATTCTGGTTTTAGTGTTAATCATGTTCAACGAGAAGCTAATGTAGTTGCCCATACTTTAGCTTCACATGCTTTAAGAGATAGTGATAGCCAAGTTTGGTTTGTACTAGCTCCCGACTTTATAAGGGATGACATTCGAAACGGTGTAATCGTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

137

Amino Acids

15.3

Weight (kDa)

5.31

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 109 4.1e-22 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
Acc16I TGCGCA 1 cut(s) 166
AccI GTMKAC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 179, 284
AjiI CACGTC 1 cut(s) 72
AluBI AGCT 6 cut(s) 41, 122, 182, 293, 317, 365
AluI AGCT 6 cut(s) 41, 122, 182, 293, 317, 365
Alw26I GTCTC 1 cut(s) 99
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 66
AsuII TTCGAA 2 cut(s) 153, 391
AsuNHI GCTAGC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 3 cut(s) 42, 119, 362
BmgBI CACGTC 1 cut(s) 72
BmtI GCTAGC 1 cut(s) 122
Bpu14I TTCGAA 2 cut(s) 153, 391
BpuEI CTTGAG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 255
Bsp119I TTCGAA 2 cut(s) 153, 391
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 136
BspOI GCTAGC 1 cut(s) 122
BspT104I TTCGAA 2 cut(s) 153, 391
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 247
BstBI TTCGAA 2 cut(s) 153, 391
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 167
BstMAI GTCTC 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 247, 323
BstNSI RCATGY 1 cut(s) 326
BsuRI GGCC 1 cut(s) 255
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 359
CviAII CATG 4 cut(s) 83, 137, 278, 323
CviJI RGCY 9 cut(s) 41, 55, 122, 182, 255, 293, 317, 345, 365
CviKI_1 RGCY 9 cut(s) 41, 55, 122, 182, 255, 293, 317, 345, 365
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 4 cut(s) 86, 140, 281, 326
FatI CATG 4 cut(s) 82, 136, 277, 322
FauNDI CATATG 1 cut(s) 58
FblI GTMKAC 1 cut(s) 209
FokI GGATG 1 cut(s) 395
FspBI CTAG 3 cut(s) 42, 119, 362
FspI TGCGCA 1 cut(s) 166
GlaI GCGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 255
HhaI GCGC 1 cut(s) 167
Hin1II CATG 4 cut(s) 86, 140, 281, 326
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 413
Hpy188III TCNNGA 3 cut(s) 104, 200, 368
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 16, 133, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 323
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 4 cut(s) 86, 140, 281, 326
HspAI GCGC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 1 cut(s) 246
MaeI CTAG 3 cut(s) 42, 119, 362
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 72
MboII GAAGA 1 cut(s) 152
MfeI CAATTG 1 cut(s) 242
MluCI AATT 5 cut(s) 19, 89, 147, 217, 242
MnlI CCTC 3 cut(s) 19, 136, 223
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 3 cut(s) 186, 273, 329
MslI CAYNNNNRTG 1 cut(s) 21
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 247, 323
NdeI CATATG 1 cut(s) 58
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 4 cut(s) 86, 140, 281, 326
NmuCI GTSAC 1 cut(s) 72
NsbI TGCGCA 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 18
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 2 cut(s) 153, 391
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 111
PsiI TTATAA 1 cut(s) 377
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 3 cut(s) 186, 273, 329
SetI ASST 8 cut(s) 43, 74, 124, 147, 184, 295, 319, 367
SfuI TTCGAA 2 cut(s) 153, 391
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 5 cut(s) 19, 89, 147, 217, 242
SspMI CTAG 3 cut(s) 42, 119, 362
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 74
TaqI TCGA 3 cut(s) 103, 153, 391
TasI AATT 5 cut(s) 19, 89, 147, 217, 242
TatI WGTACW 1 cut(s) 358
Tru1I TTAA 3 cut(s) 186, 273, 329
Tru9I TTAA 3 cut(s) 186, 273, 329
TseFI GTSAC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 5 cut(s) 25, 65, 71, 153, 230
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 3 cut(s) 42, 119, 362
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.