Rroxscaffold_2G00134840

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003579
Physical Location & Seq
Reverse (-)
72383693 .. 72386531
2839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134840.1

Sequence Viewer

Length: 816 bp
ATGGCCCTAATCTCCACACAAACCCTAACCCTGAAGTCCCATCTTACACTTTCTCTTCCTTCTCATCCACCTTCCCAATCTTTCTCTCTCTCACCATCCACTCCTCACTTTCTCCACACCCCAAAATCAACAGCACGGTTTAGCGCTAGACGACTCGTCGTTTCCAGAGCCACCACATCCTCTGCTTTTGATTTCAGCCCCAGCATCGGTGAGGTCCTCGGTGAAGTTGGCATCTTCACCGCTGCGGGTGATCCCGTCCGGTTCAACGATCTATTGGATCAAAACGAGGGGATAGTTGTTGTTGCGCTATTGAGGCACTTTGGATGCGTTTGCTGTTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCTAGATTTGACTCAGCTGGTGTGAAACTAATCGCAGTTGGTGTTGGTACTCCTGATAAAGCTCGCATCCTTGCAGAAGGGGAAGACATTTCCAGTTATGCAAAGTTGCCGGACAAGTCTTTTAATTACCATTTCCCATGGATTCCCCTTTATGCCGATCCTGATCGTAAGGCATATGATGTTTTGGGCTTATACTTTGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTCTCAAGAATTGAGGCCCTGCAGAAAGCTTTAAAGAACTATACGATTAAAGCCACTCCAGATGATATAAATAGTGTGTTACAACAGGGTGGGATGTTCGTCTTCAAAGGGAAGCAGTTATTGTATGCTCGGAAAGACGAAGGGACAGGTGATCATGCCCCATTAGATGATATCTTTGATGTTTGTTGCAAAGTTCCTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

271

Amino Acids

29.55

Weight (kDa)

8.22

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 119 - 250 2.3e-14 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 240, 245
AclWI GGATC 3 cut(s) 245, 285, 521
AcuI CTGAAG 2 cut(s) 53, 333
AfaI GTAC 1 cut(s) 418
AfeI AGCGCT 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 3 cut(s) 265, 589, 715
AhdI GACNNNNNGTC 1 cut(s) 155
AluBI AGCT 6 cut(s) 353, 371, 386, 431, 596, 638
AluI AGCT 6 cut(s) 353, 371, 386, 431, 596, 638
AlwI GGATC 3 cut(s) 245, 285, 521
Aor51HI AGCGCT 1 cut(s) 145
AoxI GGCC 2 cut(s) 3, 624
ApeKI GCWGC 1 cut(s) 242
ArsI GACNNNNNNTTYG 1 cut(s) 792
AspLEI GCGC 2 cut(s) 146, 307
AspS9I GGNCC 3 cut(s) 4, 214, 625
AsuHPI GGTGA 6 cut(s) 84, 221, 229, 233, 260, 770
AvaII GGWCC 1 cut(s) 214
BbsI GAAGAC 2 cut(s) 459, 703
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 48, 103
BclI TGATCA 1 cut(s) 760
BfaI CTAG 3 cut(s) 147, 372, 597
BfmI CTRYAG 1 cut(s) 629
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 214
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 4, 214, 625
BmsI GCATC 4 cut(s) 213, 240, 314, 444
BpiI GAAGAC 2 cut(s) 459, 703
BpmI CTGGAG 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 598
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 217, 506
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 531
BseDI CCNNGG 2 cut(s) 217, 506
BseGI GGATG 6 cut(s) 64, 95, 176, 329, 435, 708
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 2 cut(s) 5, 626
BsiSI CCGG 2 cut(s) 259, 479
BslFI GGGAC 2 cut(s) 22, 766
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 22, 766
BsnI GGCC 2 cut(s) 5, 626
Bsp143I GATC 6 cut(s) 250, 268, 277, 526, 532, 760
Bsp19I CCATGG 1 cut(s) 506
BspACI CCGC 2 cut(s) 240, 245
BspANI GGCC 2 cut(s) 5, 626
BspCNI CTCAG 1 cut(s) 395
BspMAI CTGCAG 1 cut(s) 633
BspPI GGATC 3 cut(s) 245, 285, 521
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 2 cut(s) 217, 506
BssMI GATC 6 cut(s) 250, 268, 277, 526, 532, 760
BssT1I CCWWGG 1 cut(s) 506
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 382
BstDSI CCRYGG 1 cut(s) 506
BstF5I GGATG 6 cut(s) 64, 95, 176, 329, 435, 708
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 146, 307
BstKTI GATC 6 cut(s) 253, 271, 280, 529, 535, 763
BstMBI GATC 6 cut(s) 250, 268, 277, 526, 532, 760
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 629
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 2 cut(s) 459, 703
BsuRI GGCC 2 cut(s) 5, 626
BtgI CCRYGG 1 cut(s) 506
BtsCI GGATG 6 cut(s) 64, 95, 176, 329, 435, 708
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 2 cut(s) 146, 307
Cfr13I GGNCC 3 cut(s) 4, 214, 625
Csp6I GTAC 1 cut(s) 417
CviAII CATG 2 cut(s) 507, 764
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 1 cut(s) 382
DpnI GATC 6 cut(s) 252, 270, 279, 528, 534, 762
DpnII GATC 6 cut(s) 250, 268, 277, 526, 532, 760
DraI TTTAAA 1 cut(s) 642
DriI GACNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 506
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 214
Eco47III AGCGCT 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 53, 333
EcoO109I RGGNCCY 2 cut(s) 214, 625
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 506
FaeI CATG 2 cut(s) 510, 767
FaqI GGGAC 2 cut(s) 22, 766
FatI CATG 2 cut(s) 506, 763
FauI CCCGC 1 cut(s) 238
FauNDI CATATG 1 cut(s) 544
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 6 cut(s) 51, 82, 163, 336, 422, 715
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 3 cut(s) 147, 372, 597
GlaI GCGC 2 cut(s) 145, 306
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 651
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 5, 626
HapII CCGG 2 cut(s) 259, 479
HhaI GCGC 2 cut(s) 146, 307
Hin1II CATG 2 cut(s) 510, 767
Hin6I GCGC 2 cut(s) 144, 305
HinP1I GCGC 2 cut(s) 144, 305
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 4 cut(s) 153, 362, 380, 511
HpaII CCGG 2 cut(s) 259, 479
HphI GGTGA 6 cut(s) 84, 221, 229, 233, 260, 770
Hpy188I TCNGA 1 cut(s) 741
Hpy188III TCNNGA 6 cut(s) 165, 422, 530, 615, 668, 813
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 69, 81, 440, 743
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 5 cut(s) 443, 470, 602, 631, 798
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 2 cut(s) 510, 767
HspAI GCGC 2 cut(s) 144, 305
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 6 cut(s) 250, 268, 277, 526, 532, 760
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 4 cut(s) 213, 240, 314, 444
MaeI CTAG 3 cut(s) 147, 372, 597
MaeIII GTNAC 1 cut(s) 687
MalI GATC 6 cut(s) 252, 270, 279, 528, 534, 762
MboI GATC 6 cut(s) 250, 268, 277, 526, 532, 760
MboII GAAGA 5 cut(s) 47, 226, 464, 577, 703
MluCI AATT 2 cut(s) 493, 618
MlyI GAGTC 2 cut(s) 147, 374
MnlI CCTC 7 cut(s) 114, 190, 205, 227, 280, 306, 616
MseI TTAA 3 cut(s) 492, 641, 657
MspA1I CMGCKG 2 cut(s) 242, 386
MspI CCGG 2 cut(s) 259, 479
MwoI GCNNNNNNNGC 1 cut(s) 313
NcoI CCATGG 1 cut(s) 506
NdeI CATATG 1 cut(s) 544
NdeII GATC 6 cut(s) 250, 268, 277, 526, 532, 760
NlaIII CATG 2 cut(s) 510, 767
PfeI GAWTC 2 cut(s) 362, 511
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 2 cut(s) 147, 374
PpsI GAGTC 2 cut(s) 147, 374
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 4, 214, 625
PspPPI RGGWCCY 1 cut(s) 214
PstI CTGCAG 1 cut(s) 633
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
SaqAI TTAA 3 cut(s) 492, 641, 657
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 6 cut(s) 250, 268, 277, 526, 532, 760
Sau96I GGNCC 3 cut(s) 4, 214, 625
SchI GAGTC 2 cut(s) 147, 374
SfaNI GCATC 4 cut(s) 213, 240, 314, 444
SfcI CTRYAG 1 cut(s) 629
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 2 cut(s) 493, 618
SsiI CCGC 2 cut(s) 240, 245
SspMI CTAG 3 cut(s) 147, 372, 597
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 577
TasI AATT 2 cut(s) 493, 618
TfiI GAWTC 2 cut(s) 362, 511
Tru1I TTAA 3 cut(s) 492, 641, 657
Tru9I TTAA 3 cut(s) 492, 641, 657
TseI GCWGC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 3 cut(s) 147, 372, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.