RLG00000017690

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003579
Physical Location & Seq
Forward (+)
19922590 .. 19925119
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017690

Sequence Viewer

Length: 780 bp
ATGGCCCTAATCCCCACACAAACCCTAACCCTAAAATCCCCTCCTACCCTTTCTCCTCCTTCTCATCCATCTACCTTTCCCACTTCCCAGTCTCTCTCCCTCTCACCTCCCACTCCTCACTCTCTCTCCCTTTTCTCCACCCCTAATTCAACACCACGGTTCAGCGCTAGACGACATGTCGTCTCCAGAGCCACCGCGACCTCCGCCTCGGATTTCAGCCCCGCCATCGGTGAGATCCTCGGCGACGTCAGAATTTTCACCGCTGCTGGAGACTCCGTCCAGTTCAAGGACCTCTGGGACCAGAATGAGGTCTCCAATTTTCTTAATTTTTCAAAAATTTTAGGTTGGGAACTTGCTTCAGCTCTAAAAGAATCGAAAGAAAGATTTGAATCAGCTGGTGTGAAGCTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCGCGTATCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTCTATGCTGATACTGATCGTAAGGCGTATGATGTTTTGGGCTTATACTATGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCGAAGGTGTTGTCAAGATTTGATGCTCTGCAGAAAGCTGTCAAAAACTATACCATTGAAGCCACTCCAGATGATAGAAGTAGTGTGTTACAACAGGGAGGGATGTTTGTCTTCAAAGGTAAGCAGCTATTGTATGCTCGGAAAGACGAAGGGACAGGTGATCATGCTCCCTTGGATGATATCTTAAATGTTTGCTACAAAGTTCCTGTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

260

Amino Acids

28.22

Weight (kDa)

8.56

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 122 - 238 3.9e-19 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccII CGCG 2 cut(s) 197, 442
AciI CCGC 4 cut(s) 195, 204, 222, 261
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 2 cut(s) 252, 336
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 246
AfeI AGCGCT 1 cut(s) 166
AfiI CCNNNNNNNGG 3 cut(s) 227, 286, 307
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 7 cut(s) 150, 286, 333, 389, 553, 623, 679
AhdI GACNNNNNGTC 2 cut(s) 176, 179
AluBI AGCT 6 cut(s) 362, 395, 406, 560, 602, 691
AluI AGCT 6 cut(s) 362, 395, 406, 560, 602, 691
Alw26I GTCTC 4 cut(s) 96, 187, 264, 316
AlwI GGATC 1 cut(s) 229
Aor51HI AGCGCT 1 cut(s) 166
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 263, 688
ApoI RAATTY 2 cut(s) 252, 336
ArsI GACNNNNNNTTYG 3 cut(s) 560, 592, 756
AspLEI GCGC 2 cut(s) 167, 442
AspS9I GGNCC 3 cut(s) 4, 289, 298
AsuHPI GGTGA 4 cut(s) 96, 242, 250, 734
AvaII GGWCC 2 cut(s) 289, 298
BbsI GAAGAC 1 cut(s) 667
BbvI GCAGC 2 cut(s) 250, 700
BccI CCATC 2 cut(s) 76, 233
BciVI GTATCC 1 cut(s) 455
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 4 cut(s) 96, 187, 264, 316
BfaI CTAG 2 cut(s) 168, 561
BfmI CTRYAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 168
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 2 cut(s) 264, 689
BlsI GCNGC 2 cut(s) 265, 690
Bme18I GGWCC 2 cut(s) 289, 298
BmeRI GACNNNNNGTC 2 cut(s) 176, 179
BmgT120I GGNCC 3 cut(s) 4, 289, 298
BmiI GGNNCC 1 cut(s) 299
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 667
BpmI CTGGAG 3 cut(s) 169, 288, 615
BsaBI GATNNNNATC 2 cut(s) 388, 495
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 155, 207, 238, 471, 735
BsaXI ACNNNNNCTCC 6 cut(s) 37, 67, 110, 140, 261, 291
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 286, 307
Bse1I ACTGG 2 cut(s) 88, 280
Bse8I GATNNNNATC 2 cut(s) 388, 495
BseDI CCNNGG 5 cut(s) 155, 207, 238, 471, 735
BseGI GGATG 3 cut(s) 64, 672, 745
BseJI GATNNNNATC 2 cut(s) 388, 495
BseLI CCNNNNNNNGG 3 cut(s) 227, 286, 307
BseNI ACTGG 2 cut(s) 88, 280
BseRI GAGGAG 2 cut(s) 45, 105
BseXI GCAGC 2 cut(s) 250, 700
Bsh1236I CGCG 2 cut(s) 197, 442
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 2 cut(s) 311, 730
BslI CCNNNNNNNGG 3 cut(s) 227, 286, 307
BsmAI GTCTC 4 cut(s) 96, 187, 264, 316
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 311, 730
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 316
Bsp143I GATC 3 cut(s) 234, 496, 724
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 4 cut(s) 195, 204, 222, 261
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 2 cut(s) 197, 442
BspLI GGNNCC 1 cut(s) 299
BspMAI CTGCAG 1 cut(s) 597
BspPI GGATC 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 316
BsrI ACTGG 2 cut(s) 88, 280
BssECI CCNNGG 5 cut(s) 155, 207, 238, 471, 735
BssMI GATC 3 cut(s) 234, 496, 724
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 471, 735
Bst4CI ACNGT 2 cut(s) 159, 459
BstACI GRCGYC 1 cut(s) 246
BstDSI CCRYGG 2 cut(s) 155, 471
BstEII GGTNACC 1 cut(s) 459
BstF5I GGATG 3 cut(s) 64, 672, 745
BstFNI CGCG 2 cut(s) 197, 442
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 167, 442
BstKTI GATC 3 cut(s) 237, 499, 727
BstMAI GTCTC 4 cut(s) 96, 187, 264, 316
BstMBI GATC 3 cut(s) 234, 496, 724
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 179
BstPI GGTNACC 1 cut(s) 459
BstSFI CTRYAG 1 cut(s) 593
BstUI CGCG 2 cut(s) 197, 442
BstV1I GCAGC 2 cut(s) 250, 700
BstV2I GAAGAC 1 cut(s) 667
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 155, 471
BtsCI GGATG 3 cut(s) 64, 672, 745
CfoI GCGC 2 cut(s) 167, 442
Cfr13I GGNCC 3 cut(s) 4, 289, 298
CviAII CATG 3 cut(s) 176, 472, 728
DpnI GATC 3 cut(s) 236, 498, 726
DpnII GATC 3 cut(s) 234, 496, 724
DriI GACNNNNNGTC 2 cut(s) 176, 179
Eam1105I GACNNNNNGTC 2 cut(s) 176, 179
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 471, 735
Eco31I GGTCTC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 2 cut(s) 289, 298
Eco47III AGCGCT 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 342
Eco91I GGTNACC 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 289
EcoO65I GGTNACC 1 cut(s) 459
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 2 cut(s) 471, 735
ErhI CCWWGG 2 cut(s) 471, 735
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 3 cut(s) 179, 475, 731
FaiI YATR 9 cut(s) 177, 473, 486, 510, 526, 531, 615, 699, 729
FaqI GGGAC 2 cut(s) 311, 730
FatI CATG 3 cut(s) 175, 471, 727
FauI CCCGC 1 cut(s) 229
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 2 cut(s) 264, 689
FokI GGATG 3 cut(s) 51, 679, 752
Fsp4HI GCNGC 2 cut(s) 264, 689
FspBI CTAG 2 cut(s) 168, 561
GlaI GCGC 2 cut(s) 166, 441
GluI GCNGC 2 cut(s) 264, 689
GsuI CTGGAG 3 cut(s) 169, 288, 615
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 167, 442
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 3 cut(s) 179, 475, 731
Hin6I GCGC 2 cut(s) 165, 440
HinP1I GCGC 2 cut(s) 165, 440
HinfI GANTC 4 cut(s) 272, 371, 389, 476
HphI GGTGA 4 cut(s) 96, 242, 250, 734
Hpy188I TCNGA 3 cut(s) 211, 251, 705
Hpy188III TCNNGA 5 cut(s) 186, 431, 579, 632, 777
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 69, 562, 707
HpyCH4III ACNGT 2 cut(s) 159, 459
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 452, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 3 cut(s) 179, 475, 731
HspAI GCGC 2 cut(s) 165, 440
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 3 cut(s) 234, 496, 724
LmnI GCTCC 1 cut(s) 736
Lsp1109I GCAGC 2 cut(s) 250, 700
LweI GCATC 1 cut(s) 577
MaeI CTAG 2 cut(s) 168, 561
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 459, 651
MalI GATC 3 cut(s) 236, 498, 726
MboI GATC 3 cut(s) 234, 496, 724
MboII GAAGA 2 cut(s) 541, 667
MflI RGATCY 1 cut(s) 234
MluCI AATT 6 cut(s) 145, 252, 316, 325, 336, 408
MlyI GAGTC 1 cut(s) 266
MseI TTAA 2 cut(s) 324, 749
MspA1I CMGCKG 2 cut(s) 263, 395
MvnI CGCG 2 cut(s) 197, 442
MwoI GCNNNNNNNGC 1 cut(s) 203
NcoI CCATGG 1 cut(s) 471
NdeII GATC 3 cut(s) 234, 496, 724
NlaIII CATG 3 cut(s) 179, 475, 731
NlaIV GGNNCC 1 cut(s) 299
NmeAIII GCCGAG 1 cut(s) 219
NspI RCATGY 1 cut(s) 179
PciI ACATGT 1 cut(s) 175
PfeI GAWTC 3 cut(s) 371, 389, 476
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 265, 690
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 289
PscI ACATGT 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 3 cut(s) 4, 289, 298
PspPPI RGGWCCY 1 cut(s) 289
PstI CTGCAG 1 cut(s) 597
PsuI RGATCY 1 cut(s) 234
PsyI GACNNNGTC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 395
SaqAI TTAA 2 cut(s) 324, 749
SatI GCNGC 2 cut(s) 264, 689
Sau3AI GATC 3 cut(s) 234, 496, 724
Sau96I GGNCC 3 cut(s) 4, 289, 298
SchI GAGTC 1 cut(s) 266
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 593
SinI GGWCC 2 cut(s) 289, 298
Sse9I AATT 6 cut(s) 145, 252, 316, 325, 336, 408
SsiI CCGC 4 cut(s) 195, 204, 222, 261
SspMI CTAG 2 cut(s) 168, 561
StyI CCWWGG 2 cut(s) 471, 735
TaaI ACNGT 2 cut(s) 159, 459
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 374, 541
TasI AATT 6 cut(s) 145, 252, 316, 325, 336, 408
TfiI GAWTC 3 cut(s) 371, 389, 476
Tru1I TTAA 2 cut(s) 324, 749
Tru9I TTAA 2 cut(s) 324, 749
TseI GCWGC 2 cut(s) 263, 688
TspGWI ACGGA 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 289, 298
XapI RAATTY 2 cut(s) 252, 336
XceI RCATGY 1 cut(s) 179
XspI CTAG 2 cut(s) 168, 561
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.