Rw2G016370

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003579
Physical Location & Seq
Forward (+)
19283558 .. 19286386
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016370.1

Sequence Viewer

Length: 771 bp
ATGGCCCTAATCTCCACACAGACCCTAACCCTGAAATCCCCTCTTAACCTTTCTCTTCCTTCTCATCCATCTTCCCAGTCTTTCTCACTCTCACCATCCACTCCTCGCTCTCTCCATACCCCAAAATCAACAGCACGGTTTAGTGCTAGACGACTTGTCGCTTCCAGAGCCACCACATACTCTGCTTTGGATTTCAGCCCCAGCATCGGTGAGGTCCTCGGTGAAGTTGGTATCTTCACCGCTGCTGGTGATCCCGTCCGGTTCAACGATCTATTGGATCAAAACGAGGGGATAGTTGTTGTTGCGCTATTGAGGCACTTTGGATGCGTTTGCTGTTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCTAGATTTGACTCAGCTGGTGTGAAACTAATCGCGGTCGGTGTTGGCACTCCTGATAAAGCTCGCATCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTTTATGCCGATCCTGATCGTAAGGCATATGATGTTTTGGGCTTATACTTTGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTCTCAAGAATTGAGGCCCTGCAGAAAGCTTTAAAGAACTATACGATTAAAGCCACTCCAGATGATATAAATAGTGTGTTACAACAGGGTGGGATGTTCGTCTTCACAGGGAAGCAGTTATTGTATGCTCGGAAGGACGAAGGGACAGGTGATCATGCCCCATTAGATGATATCTTTGATGTTTGTTGCAAATTTCCTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

256

Amino Acids

27.75

Weight (kDa)

8.56

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 119 - 235 7e-19 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 404
AciI CCGC 2 cut(s) 240, 404
AclWI GGATC 3 cut(s) 245, 285, 476
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 265, 544
AhdI GACNNNNNGTC 1 cut(s) 155
AluBI AGCT 6 cut(s) 353, 371, 386, 431, 551, 593
AluI AGCT 6 cut(s) 353, 371, 386, 431, 551, 593
AlwI GGATC 3 cut(s) 245, 285, 476
AoxI GGCC 2 cut(s) 3, 579
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 755
ArsI GACNNNNNNTTYG 1 cut(s) 747
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 3 cut(s) 4, 214, 580
AsuHPI GGTGA 6 cut(s) 84, 221, 229, 233, 260, 725
AvaII GGWCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 658
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 76, 103
BclI TGATCA 1 cut(s) 715
BfaI CTAG 3 cut(s) 147, 372, 552
BfmI CTRYAG 1 cut(s) 584
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 214
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 4, 214, 580
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 213, 314, 444
BmuI ACTGGG 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 658
BpmI CTGGAG 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 553
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 217, 462
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 217, 462
BseGI GGATG 5 cut(s) 64, 95, 329, 435, 663
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 2 cut(s) 5, 581
BsiEI CGRYCG 1 cut(s) 408
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 2 cut(s) 5, 581
Bsp143I GATC 6 cut(s) 250, 268, 277, 481, 487, 715
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 2 cut(s) 240, 404
BspANI GGCC 2 cut(s) 5, 581
BspCNI CTCAG 1 cut(s) 395
BspFNI CGCG 1 cut(s) 404
BspMAI CTGCAG 1 cut(s) 588
BspPI GGATC 3 cut(s) 245, 285, 476
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 217, 462
BssMI GATC 6 cut(s) 250, 268, 277, 481, 487, 715
BssT1I CCWWGG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 138, 450
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 382
BstDSI CCRYGG 1 cut(s) 462
BstEII GGTNACC 1 cut(s) 450
BstF5I GGATG 5 cut(s) 64, 95, 329, 435, 663
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 6 cut(s) 253, 271, 280, 484, 490, 718
BstMBI GATC 6 cut(s) 250, 268, 277, 481, 487, 715
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 2 cut(s) 167, 313
BstPI GGTNACC 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 584
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 658
BsuRI GGCC 2 cut(s) 5, 581
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 5 cut(s) 64, 95, 329, 435, 663
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 4, 214, 580
CviAII CATG 2 cut(s) 463, 719
DdeI CTNAG 1 cut(s) 382
DpnI GATC 6 cut(s) 252, 270, 279, 483, 489, 717
DpnII GATC 6 cut(s) 250, 268, 277, 481, 487, 715
DraI TTTAAA 1 cut(s) 597
DriI GACNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 462
Eco32I GATATC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 333
Eco91I GGTNACC 1 cut(s) 450
EcoO109I RGGNCCY 2 cut(s) 214, 580
EcoO65I GGTNACC 1 cut(s) 450
EcoRV GATATC 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 2 cut(s) 466, 722
FaqI GGGAC 1 cut(s) 721
FatI CATG 2 cut(s) 462, 718
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 5 cut(s) 51, 82, 336, 422, 670
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 3 cut(s) 147, 372, 552
GlaI GCGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 2 cut(s) 5, 581
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 466, 722
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 3 cut(s) 362, 380, 467
HpaII CCGG 1 cut(s) 259
HphI GGTGA 6 cut(s) 84, 221, 229, 233, 260, 725
Hpy188I TCNGA 1 cut(s) 696
Hpy188III TCNNGA 6 cut(s) 165, 422, 485, 570, 623, 768
HpyAV CCTTC 3 cut(s) 69, 691, 698
HpyCH4III ACNGT 2 cut(s) 138, 450
HpyCH4V TGCA 4 cut(s) 443, 557, 586, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 313
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 2 cut(s) 466, 722
HspAI GCGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 6 cut(s) 250, 268, 277, 481, 487, 715
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 3 cut(s) 213, 314, 444
MaeI CTAG 3 cut(s) 147, 372, 552
MaeIII GTNAC 2 cut(s) 450, 642
MalI GATC 6 cut(s) 252, 270, 279, 483, 489, 717
MboI GATC 6 cut(s) 250, 268, 277, 481, 487, 715
MboII GAAGA 5 cut(s) 47, 63, 226, 532, 658
MluCI AATT 2 cut(s) 573, 755
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 7 cut(s) 51, 114, 205, 227, 280, 306, 571
MseI TTAA 3 cut(s) 45, 596, 612
MspA1I CMGCKG 2 cut(s) 242, 386
MspI CCGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 167, 313
NcoI CCATGG 1 cut(s) 462
NdeI CATATG 1 cut(s) 499
NdeII GATC 6 cut(s) 250, 268, 277, 481, 487, 715
NlaIII CATG 2 cut(s) 466, 722
PfeI GAWTC 2 cut(s) 362, 467
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 4, 214, 580
PspPPI RGGWCCY 1 cut(s) 214
PstI CTGCAG 1 cut(s) 588
PvuII CAGCTG 1 cut(s) 386
SaqAI TTAA 3 cut(s) 45, 596, 612
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 6 cut(s) 250, 268, 277, 481, 487, 715
Sau96I GGNCC 3 cut(s) 4, 214, 580
SchI GAGTC 1 cut(s) 374
SfaNI GCATC 3 cut(s) 213, 314, 444
SfcI CTRYAG 1 cut(s) 584
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
Sse9I AATT 2 cut(s) 573, 755
SsiI CCGC 2 cut(s) 240, 404
SspMI CTAG 3 cut(s) 147, 372, 552
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 138, 450
TaqI TCGA 1 cut(s) 532
TasI AATT 2 cut(s) 573, 755
TfiI GAWTC 2 cut(s) 362, 467
Tru1I TTAA 3 cut(s) 45, 596, 612
Tru9I TTAA 3 cut(s) 45, 596, 612
TseI GCWGC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 755
XspI CTAG 3 cut(s) 147, 372, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.