Rh2DG211900

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003579
Physical Location & Seq
Forward (+)
20107872 .. 20132234
24363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG211900.1

Sequence Viewer

Length: 864 bp
ATGGCCCTAATCTCCACACAAACCCTAACCCTGAAATCCCCTCTTAACCTTTCTCTTCCTTCTCATCCATCTTCCCAATCTTTCTCACTCTCACCATCCACTCCTCACTCTCTCCACACCCCAAAATCAACAGCACGGTTTAGTGCTAGACGACTTGTCGTTTCCAGAGCCACCACATCCTCTGCTTTGGATTTCAGCCCCAGCATCGGTGAGGTCCTCGGTGAAGTTGGTATCTTCACCGCTGCTGGTGATCCCGTCCGGTTCAACGATCTATTGGATCAAAACGAGGGGATAGTTGTTGTTGCGCTATTGAGGCACTTTGGATGCGTTTGCTGTTGGGAACTTGCTTCAGCACTAAAAGAATCAAAAGCTAGATTTGACTCAGCTGGTGTGAAACTAATCGCGGTCGGTGTTGGCACTCCTGATAAAGCTCGCATCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTTTATGCCGATCCTGATCGTAAGGCATATGATGTTTTGGGCTTATACTTTGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGTGTGTTACAACAGGGTGGGATGTTCGTCTTCAAAGGGAAGCAGTTATTGTATGCTCGGAAAGACGAAGGGACAGCTCTATAAACAATCCCCACCTACGTGATGATAATTCCTCATGGTCTTCTATACAGATCACAACGCCACTGACCCATCCTTTCATCTCTGAGTTATGGGCCAATAGAAGAAGTACCCCCAAGCTGGATCAGTTCCAGAGAGATCAGACGATTTGCCCGAGTACTCGTCTGAGGATGAAGGAGACTGAGCTCGAAGCTCCTTGTCTTACAGGAGAACTTGTCCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

287

Amino Acids

31.61

Weight (kDa)

8.49

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 119 - 188 2.7e-11 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 404
AciI CCGC 2 cut(s) 240, 404
AclWI GGATC 4 cut(s) 245, 285, 476, 768
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 2 cut(s) 748, 796
AfiI CCNNNNNNNGG 2 cut(s) 206, 757
AgsI TTSAA 3 cut(s) 265, 544, 593
AhdI GACNNNNNGTC 1 cut(s) 155
AleI CACNNNNGTG 1 cut(s) 657
AluBI AGCT 8 cut(s) 371, 386, 431, 551, 636, 757, 823, 830
AluI AGCT 8 cut(s) 371, 386, 431, 551, 636, 757, 823, 830
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 4 cut(s) 245, 285, 476, 768
Ama87I CYCGRG 1 cut(s) 790
AoxI GGCC 2 cut(s) 3, 732
ApeKI GCWGC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 3 cut(s) 4, 214, 732
AsuHPI GGTGA 5 cut(s) 84, 221, 229, 233, 260
AvaI CYCGRG 1 cut(s) 790
AvaII GGWCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 825
BbsI GAAGAC 2 cut(s) 581, 672
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 76, 103, 717
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 3 cut(s) 147, 372, 552
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BmcAI AGTACT 1 cut(s) 796
Bme18I GGWCC 1 cut(s) 214
BmeRI GACNNNNNGTC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 790
BmgT120I GGNCC 3 cut(s) 4, 214, 732
BmsI GCATC 3 cut(s) 213, 314, 444
BpiI GAAGAC 2 cut(s) 581, 672
BsaAI YACGTR 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 217, 462
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 1 cut(s) 837
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 757
Bse8I GATNNNNATC 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 217, 462
BseGI GGATG 8 cut(s) 64, 95, 176, 329, 435, 586, 709, 813
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 206, 757
BseMII CTCAG 4 cut(s) 396, 714, 794, 810
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 2 cut(s) 5, 734
BsiEI CGRYCG 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 1 cut(s) 790
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 2 cut(s) 206, 757
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 2 cut(s) 5, 734
BsoBI CYCGRG 1 cut(s) 790
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 8 cut(s) 250, 268, 277, 481, 487, 690, 760, 775
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 2 cut(s) 240, 404
BspANI GGCC 2 cut(s) 5, 734
BspCNI CTCAG 4 cut(s) 395, 715, 795, 811
BspFNI CGCG 1 cut(s) 404
BspPI GGATC 4 cut(s) 245, 285, 476, 768
BssECI CCNNGG 2 cut(s) 217, 462
BssMI GATC 8 cut(s) 250, 268, 277, 481, 487, 690, 760, 775
BssT1I CCWWGG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 138, 450
Bst6I CTCTTC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 4 cut(s) 382, 723, 803, 819
BstDSI CCRYGG 1 cut(s) 462
BstEII GGTNACC 1 cut(s) 450
BstF5I GGATG 8 cut(s) 64, 95, 176, 329, 435, 586, 709, 813
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 8 cut(s) 253, 271, 280, 484, 490, 693, 763, 778
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 8 cut(s) 250, 268, 277, 481, 487, 690, 760, 775
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 450
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 2 cut(s) 581, 672
BsuRI GGCC 2 cut(s) 5, 734
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 8 cut(s) 64, 95, 176, 329, 435, 586, 709, 813
BtsIMutI CAGTG 2 cut(s) 701, 859
Cac8I GCNNGC 1 cut(s) 433
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 4, 214, 732
Csp6I GTAC 2 cut(s) 747, 795
CviAII CATG 2 cut(s) 463, 675
CviQI GTAC 2 cut(s) 747, 795
DdeI CTNAG 4 cut(s) 382, 723, 803, 819
DpnI GATC 8 cut(s) 252, 270, 279, 483, 489, 692, 762, 777
DpnII GATC 8 cut(s) 250, 268, 277, 481, 487, 690, 760, 775
DriI GACNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 60
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 790
Eco91I GGTNACC 1 cut(s) 450
EcoICRI GAGCTC 1 cut(s) 823
EcoO109I RGGNCCY 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 2 cut(s) 466, 678
FaqI GGGAC 1 cut(s) 644
FatI CATG 2 cut(s) 462, 674
FauNDI CATATG 1 cut(s) 499
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 8 cut(s) 51, 82, 163, 336, 422, 593, 696, 820
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 3 cut(s) 147, 372, 552
GlaI GCGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 204
HaeIII GGCC 2 cut(s) 5, 734
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 466, 678
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 3 cut(s) 362, 380, 467
HpaII CCGG 1 cut(s) 259
HphI GGTGA 5 cut(s) 84, 221, 229, 233, 260
Hpy188I TCNGA 4 cut(s) 619, 724, 780, 804
Hpy188III TCNNGA 4 cut(s) 165, 422, 485, 769
HpyAV CCTTC 3 cut(s) 69, 621, 805
HpyCH4III ACNGT 2 cut(s) 138, 450
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 2 cut(s) 443, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 4 cut(s) 382, 723, 803, 819
HpySE526I ACGT 1 cut(s) 658
Hsp92II CATG 2 cut(s) 466, 678
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 8 cut(s) 250, 268, 277, 481, 487, 690, 760, 775
LmnI GCTCC 1 cut(s) 835
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 3 cut(s) 213, 314, 444
MaeI CTAG 3 cut(s) 147, 372, 552
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 2 cut(s) 450, 565
MalI GATC 8 cut(s) 252, 270, 279, 483, 489, 692, 762, 777
MboI GATC 8 cut(s) 250, 268, 277, 481, 487, 690, 760, 775
MboII GAAGA 7 cut(s) 47, 63, 226, 532, 581, 672, 753
MhlI GDGCHC 1 cut(s) 825
MluCI AATT 1 cut(s) 667
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 9 cut(s) 51, 114, 190, 205, 227, 280, 306, 682, 798
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 2 cut(s) 242, 386
MspI CCGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 313
NcoI CCATGG 1 cut(s) 462
NdeI CATATG 1 cut(s) 499
NdeII GATC 8 cut(s) 250, 268, 277, 481, 487, 690, 760, 775
NlaIII CATG 2 cut(s) 466, 678
OliI CACNNNNGTG 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 788
PfeI GAWTC 2 cut(s) 362, 467
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
Ppu21I YACGTR 1 cut(s) 659
PpuMI RGGWCCY 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 4, 214, 732
PspPPI RGGWCCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 748, 796
RsaNI GTAC 2 cut(s) 747, 795
RseI CAYNNNNRTG 1 cut(s) 657
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 8 cut(s) 250, 268, 277, 481, 487, 690, 760, 775
Sau96I GGNCC 3 cut(s) 4, 214, 732
ScaI AGTACT 1 cut(s) 796
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 825
SfaNI GCATC 3 cut(s) 213, 314, 444
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 657
Sse9I AATT 1 cut(s) 667
SsiI CCGC 2 cut(s) 240, 404
SspMI CTAG 3 cut(s) 147, 372, 552
SstI GAGCTC 1 cut(s) 825
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 138, 450
TaiI ACGT 1 cut(s) 661
TaqI TCGA 2 cut(s) 532, 825
TasI AATT 1 cut(s) 667
TatI WGTACW 1 cut(s) 794
TfiI GAWTC 2 cut(s) 362, 467
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 708
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 706, 824
TspRI CASTG 1 cut(s) 708
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 3 cut(s) 147, 372, 552
ZrmI AGTACT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.