Rh2AG206000

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003579
Physical Location & Seq
Forward (+)
20846449 .. 20858130
11682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG206000.1

Sequence Viewer

Length: 573 bp
ATGACCTCCGCTTTGGATTTCAGCCCCAGCATCAGTGAGTCCCTCGGCGACGTTACCATTTTCACCGCTGCTGGAGACGCCGTCCAGTTCAAGGATCTCTGGGACCAGAACGAGGAGGTGGCTGTTGTTGCACTATTGAGGCACTTTGATGCCCTTGCAGAATCAAAAGCGAAATTTGACTCAGCTGGTGTGAAGCTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCTCGTGTCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTTTATGCTGATCCTGATCGTAAGGCGTATAATATCTTGGGTTTATACTATGGATGGGGTCCAACATTCTTCAATCCAGCCATTATTGTAAAGATGTTGTCAAGATTTGGTGCTCTGCGGAAAGCTGTAAAAAACTATACGATTAAAGCCACTCCAGATGATAGAAGTGGTGTGTTGCAACAGGGAGGGATGTTTGTCTTCAAAGGGAAGCAGTTATTGTATGCTAGGAAAGACAAAGAGACAAGTGATCATGCCCCATTAGATGATATTTTGGATGTTTGCTGCAAAGTTCCAGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

190

Amino Acids

20.8

Weight (kDa)

6.12

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 52 - 169 1.1e-19 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 9, 66, 388
AclWI GGATC 2 cut(s) 102, 275
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 91, 112
AgsI TTSAA 3 cut(s) 91, 343, 472
AluBI AGCT 4 cut(s) 185, 196, 230, 395
AluI AGCT 4 cut(s) 185, 196, 230, 395
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 2 cut(s) 69, 503
AlwI GGATC 2 cut(s) 102, 275
ApeKI GCWGC 2 cut(s) 68, 552
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 27, 549
AspS9I GGNCC 2 cut(s) 103, 329
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 2 cut(s) 103, 329
BauI CACGAG 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 2 cut(s) 55, 539
BccI CCATC 1 cut(s) 318
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 69, 503
BfaI CTAG 1 cut(s) 495
BisI GCNGC 2 cut(s) 69, 553
BlsI GCNGC 2 cut(s) 70, 554
Bme18I GGWCC 2 cut(s) 103, 329
BmgT120I GGNCC 2 cut(s) 103, 329
BmiI GGNNCC 2 cut(s) 104, 330
BmsI GCATC 2 cut(s) 39, 139
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 93, 408
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 43, 261
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 112
Bse1I ACTGG 2 cut(s) 85, 563
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 43, 261
BseGI GGATG 3 cut(s) 329, 465, 550
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 91, 112
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 2 cut(s) 85, 563
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 55, 539
BseYI CCCAGC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 385
BslFI GGGAC 2 cut(s) 25, 116
BslI CCNNNNNNNGG 2 cut(s) 91, 112
BsmAI GTCTC 2 cut(s) 69, 503
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 25, 116
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 4 cut(s) 94, 280, 286, 517
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 3 cut(s) 9, 66, 388
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 104, 330
BspPI GGATC 2 cut(s) 102, 275
BsrI ACTGG 2 cut(s) 85, 563
BssECI CCNNGG 2 cut(s) 43, 261
BssMI GATC 4 cut(s) 94, 280, 286, 517
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 261
BstEII GGTNACC 1 cut(s) 249
BstF5I GGATG 3 cut(s) 329, 465, 550
BstKTI GATC 4 cut(s) 97, 283, 289, 520
BstMAI GTCTC 2 cut(s) 69, 503
BstMBI GATC 4 cut(s) 94, 280, 286, 517
BstMWI GCNNNNNNNGC 2 cut(s) 77, 128
BstPI GGTNACC 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 55, 539
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 3 cut(s) 329, 465, 550
BtsIMutI CAGTG 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 103, 329
CseI GACGC 1 cut(s) 86
CviAII CATG 2 cut(s) 262, 521
CviJI RGCY 8 cut(s) 24, 122, 185, 196, 230, 350, 395, 419
CviKI_1 RGCY 8 cut(s) 24, 122, 185, 196, 230, 350, 395, 419
DdeI CTNAG 1 cut(s) 181
DpnI GATC 4 cut(s) 96, 282, 288, 519
DpnII GATC 4 cut(s) 94, 280, 286, 517
Eco130I CCWWGG 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 103, 329
Eco91I GGTNACC 1 cut(s) 249
EcoO65I GGTNACC 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 2 cut(s) 265, 524
FaiI YATR 8 cut(s) 263, 276, 300, 316, 321, 408, 492, 522
FaqI GGGAC 2 cut(s) 25, 116
FatI CATG 2 cut(s) 261, 520
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 69, 553
FokI GGATG 3 cut(s) 336, 472, 557
Fsp4HI GCNGC 2 cut(s) 69, 553
FspBI CTAG 1 cut(s) 495
GluI GCNGC 2 cut(s) 69, 553
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 2 cut(s) 93, 408
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 265, 524
HinfI GANTC 4 cut(s) 38, 161, 179, 266
HphI GGTGA 1 cut(s) 55
Hpy188III TCNNGA 5 cut(s) 221, 284, 372, 425, 570
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 131, 158, 242, 448, 555
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 128
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 265, 524
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 4 cut(s) 94, 280, 286, 517
Lsp1109I GCAGC 2 cut(s) 55, 539
LweI GCATC 2 cut(s) 39, 139
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 52, 249
MalI GATC 4 cut(s) 96, 282, 288, 519
MboI GATC 4 cut(s) 94, 280, 286, 517
MboII GAAGA 2 cut(s) 331, 460
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 2 cut(s) 173, 198
MlyI GAGTC 2 cut(s) 47, 173
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 6 cut(s) 16, 53, 106, 109, 132, 449
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 2 cut(s) 68, 185
MwoI GCNNNNNNNGC 2 cut(s) 77, 128
NcoI CCATGG 1 cut(s) 261
NdeII GATC 4 cut(s) 94, 280, 286, 517
NlaIII CATG 2 cut(s) 265, 524
NlaIV GGNNCC 2 cut(s) 104, 330
NmeAIII GCCGAG 1 cut(s) 24
PfeI GAWTC 2 cut(s) 161, 266
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 70, 554
PleI GAGTC 2 cut(s) 46, 173
PpsI GAGTC 2 cut(s) 46, 173
PspEI GGTNACC 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 104, 330
PspPI GGNCC 2 cut(s) 103, 329
PsuI RGATCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 2 cut(s) 69, 553
Sau3AI GATC 4 cut(s) 94, 280, 286, 517
Sau96I GGNCC 2 cut(s) 103, 329
SchI GAGTC 2 cut(s) 47, 173
SduI GDGCHC 1 cut(s) 385
SetI ASST 7 cut(s) 8, 54, 120, 187, 198, 232, 397
SfaNI GCATC 2 cut(s) 39, 139
SinI GGWCC 2 cut(s) 103, 329
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 2 cut(s) 173, 198
SsiI CCGC 3 cut(s) 9, 66, 388
SspMI CTAG 1 cut(s) 495
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 1 cut(s) 54
TasI AATT 2 cut(s) 173, 198
TfiI GAWTC 2 cut(s) 161, 266
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 68, 552
TspRI CASTG 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 103, 329
XapI RAATTY 1 cut(s) 173
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.