FvH4_1g18230

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003579
Physical Location & Seq
Forward (+)
10606038 .. 10608813
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18230.t1

Sequence Viewer

Length: 645 bp
ATGGCCCTAATCTCCACACAAACCCTGACCCTGAAATCCCCTCCTACCCTTTCTCTTCCTTCTCATCCATCTTCCCAATCTCTCTCACTCTCACCATCCAGTCCTCACTCTCTCTACGCCCCAAAACCAACAGCTCGGTTTGGCGCTAGACGACTCGTCGTTTCCAGAGCCACCACATCCTCTGCTTTGGATTTCAGCCCCAGCATAGGTGAGGTCCTCGGTGAAGTCGGTATCTTCACCGCTGCTGGTGATTCCGTCCTGTTCAACGATCTATTGGATCACAACGAGGGAATAGTTGTTGTTGCGCTATTGAGGCACTTTGGATGCGTTTGCTGTTGGGAACTTGCTTCAGCTCTAAAAGAAGCAAAAGCTAGATTTGACTCGGCTGGTGTGAAACTAATTGCGGTCGGTGTTGGTACTCCTGATAAAGCTCGTATCCTTGCAGAACGGCTGCCCTTTCCCATGGATTCCCTTTATGCTGATCCTGATCGTAAGGCATATGATGTTTTGGGCTTATATTTTGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGTAAGCTCTTATGTTGCATTCCTGCTCTCTGCTGTATCTTTCGGATATAATTACTATTTCTATTTATGGTGTTTCGATGCCTCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

215

Amino Acids

23.04

Weight (kDa)

6.89

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 119 - 184 5.1e-11 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 240, 404
AclWI GGATC 2 cut(s) 285, 476
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 265, 544
AhdI GACNNNNNGTC 1 cut(s) 155
AluBI AGCT 6 cut(s) 134, 353, 371, 431, 551, 561
AluI AGCT 6 cut(s) 134, 353, 371, 431, 551, 561
AlwI GGATC 2 cut(s) 285, 476
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 242, 451
AspLEI GCGC 2 cut(s) 146, 307
AspS9I GGNCC 2 cut(s) 4, 214
AsuHPI GGTGA 5 cut(s) 84, 221, 229, 233, 260
AvaII GGWCC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 229, 438
BccI CCATC 2 cut(s) 76, 103
BceAI ACGGC 1 cut(s) 464
BciVI GTATCC 1 cut(s) 446
BfaI CTAG 3 cut(s) 147, 372, 552
BfoI RGCGCY 1 cut(s) 147
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 2 cut(s) 243, 452
BlsI GCNGC 2 cut(s) 244, 453
Bme18I GGWCC 1 cut(s) 214
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 4, 214
BmsI GCATC 2 cut(s) 314, 622
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 217, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 217, 462
BseGI GGATG 4 cut(s) 64, 95, 176, 329
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 229, 438
BseYI CCCAGC 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 206
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 268, 277, 481, 487
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 2 cut(s) 240, 404
BspANI GGCC 1 cut(s) 5
BspPI GGATC 2 cut(s) 285, 476
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 217, 462
BssMI GATC 4 cut(s) 268, 277, 481, 487
BssT1I CCWWGG 1 cut(s) 462
Bst6I CTCTTC 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 4 cut(s) 64, 95, 176, 329
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 146, 307
BstKTI GATC 4 cut(s) 271, 280, 484, 490
BstMBI GATC 4 cut(s) 268, 277, 481, 487
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 229, 438
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 4 cut(s) 64, 95, 176, 329
CfoI GCGC 2 cut(s) 146, 307
Cfr13I GGNCC 2 cut(s) 4, 214
Csp6I GTAC 1 cut(s) 417
CviAII CATG 1 cut(s) 463
CviQI GTAC 1 cut(s) 417
DpnI GATC 4 cut(s) 270, 279, 483, 489
DpnII GATC 4 cut(s) 268, 277, 481, 487
DriI GACNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 1 cut(s) 466
FaiI YATR 9 cut(s) 206, 464, 477, 499, 501, 517, 567, 603, 622
FatI CATG 1 cut(s) 462
FauNDI CATATG 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 243, 452
FokI GGATG 4 cut(s) 51, 82, 163, 336
Fsp4HI GCNGC 2 cut(s) 243, 452
FspBI CTAG 3 cut(s) 147, 372, 552
GlaI GCGC 2 cut(s) 145, 306
GluI GCNGC 2 cut(s) 243, 452
GsaI CCCAGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 146, 307
Hin1II CATG 1 cut(s) 466
Hin6I GCGC 2 cut(s) 144, 305
HinP1I GCGC 2 cut(s) 144, 305
HinfI GANTC 4 cut(s) 153, 251, 380, 467
HphI GGTGA 5 cut(s) 84, 221, 229, 233, 260
Hpy188I TCNGA 1 cut(s) 599
Hpy188III TCNNGA 3 cut(s) 165, 422, 485
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 443, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
Hsp92II CATG 1 cut(s) 466
HspAI GCGC 2 cut(s) 144, 305
Kzo9I GATC 4 cut(s) 268, 277, 481, 487
Lsp1109I GCAGC 2 cut(s) 229, 438
LweI GCATC 2 cut(s) 314, 622
MaeI CTAG 3 cut(s) 147, 372, 552
MalI GATC 4 cut(s) 270, 279, 483, 489
MboI GATC 4 cut(s) 268, 277, 481, 487
MboII GAAGA 4 cut(s) 47, 63, 226, 532
MluCI AATT 2 cut(s) 399, 604
MlyI GAGTC 2 cut(s) 147, 374
MnlI CCTC 7 cut(s) 51, 114, 190, 205, 227, 280, 306
MspA1I CMGCKG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 313
NcoI CCATGG 1 cut(s) 462
NdeI CATATG 1 cut(s) 499
NdeII GATC 4 cut(s) 268, 277, 481, 487
NlaIII CATG 1 cut(s) 466
NmeAIII GCCGAG 1 cut(s) 362
PctI GAATGC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 251, 467
PkrI GCNGC 2 cut(s) 244, 453
PleI GAGTC 2 cut(s) 147, 374
PpsI GAGTC 2 cut(s) 147, 374
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 4, 214
PspPPI RGGWCCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
SatI GCNGC 2 cut(s) 243, 452
Sau3AI GATC 4 cut(s) 268, 277, 481, 487
Sau96I GGNCC 2 cut(s) 4, 214
SchI GAGTC 2 cut(s) 147, 374
SetI ASST 8 cut(s) 136, 211, 216, 355, 373, 433, 553, 563
SfaNI GCATC 2 cut(s) 314, 622
SinI GGWCC 1 cut(s) 214
Sse9I AATT 2 cut(s) 399, 604
SsiI CCGC 2 cut(s) 240, 404
SspMI CTAG 3 cut(s) 147, 372, 552
StyI CCWWGG 1 cut(s) 462
TaqI TCGA 2 cut(s) 532, 630
TasI AATT 2 cut(s) 399, 604
TfiI GAWTC 2 cut(s) 251, 467
TseI GCWGC 2 cut(s) 242, 451
TspGWI ACGGA 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 3 cut(s) 147, 372, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.