Rroxscaffold_2G00134830

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003579
Physical Location & Seq
Reverse (-)
72374081 .. 72377179
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134830.1

Sequence Viewer

Length: 792 bp
ATGGCCCTAATCCCCACACAAACCCTGACCCTAAAATCCCCTCCTACCCTTTCTCCTCCTTCTCATCCATCTACCTCCTTTCCCACTTCCCAGTCTCTCTCCCTCTCACCTCCCACTCCTCACTCTCTCTCCCTTTTCTCCACCCCTAATTCAACGCCACGGTTCAGCGCTAGACGACATGTCGTCTCCAGAGCCACCGCGACCTCCGCCTCGGATTTCAGCCCCGCCATCGGTGAGATCCTCGGCGACGTCAGAATTTTCACCGCTGCTGGAGACTCCGTCCAGTTCAAGGACCTCTGGGACCAGAATGAGGGCGTGGCGGTTGTTGCACTACTGAGGCACTTTGGATGCCCTTGCTGTTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGAAAGATTTGAATCAGCTGGTGTGAAGCTAATTGCTGTTGGTGTTGGTAGTCCTGATAAAGCGCGTTCCAATTTTTGTTACCATTTCCCCATGGATTCCCTCTATGCCGATACTGATCGTAAGGCTTATGATGTTTTGGGATTATACTATGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTGTCAAGATTTGATGCTCTGCAGAAAGCTGTCAAAAACTATACCATTGAAGCCACTCCAGATGATAGAAGTAGTGTGTTACAACAGGGAGGGATGTTTGTCTTCAAAGGTAAGCAGCTATTGTATGCTCGGAAAGACGAAGGGACAGGTGATCATGCTCCCTTGGATGATATCTTAAATGTTTGCTGCAAAGTTCCTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

263

Amino Acids

28.51

Weight (kDa)

8.18

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 127 - 242 1.7e-19 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccII CGCG 2 cut(s) 200, 457
AciI CCGC 5 cut(s) 198, 207, 225, 264, 320
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 249
AfeI AGCGCT 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 230, 289, 310
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 6 cut(s) 153, 289, 404, 565, 635, 691
AhdI GACNNNNNGTC 2 cut(s) 179, 182
AluBI AGCT 6 cut(s) 377, 410, 421, 572, 614, 703
AluI AGCT 6 cut(s) 377, 410, 421, 572, 614, 703
Alw26I GTCTC 3 cut(s) 99, 190, 267
AlwI GGATC 1 cut(s) 232
Aor51HI AGCGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 266, 700, 771
ApoI RAATTY 1 cut(s) 255
ArsI GACNNNNNNTTYG 3 cut(s) 572, 604, 768
AspLEI GCGC 2 cut(s) 170, 457
AspS9I GGNCC 3 cut(s) 4, 292, 301
AsuHPI GGTGA 4 cut(s) 99, 245, 253, 746
AvaII GGWCC 2 cut(s) 292, 301
BbsI GAAGAC 1 cut(s) 679
BbvI GCAGC 3 cut(s) 253, 712, 758
BccI CCATC 2 cut(s) 76, 236
BclI TGATCA 1 cut(s) 736
BcoDI GTCTC 3 cut(s) 99, 190, 267
BfaI CTAG 2 cut(s) 171, 573
BfmI CTRYAG 1 cut(s) 605
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 3 cut(s) 267, 701, 772
BlsI GCNGC 3 cut(s) 268, 702, 773
Bme18I GGWCC 2 cut(s) 292, 301
BmeRI GACNNNNNGTC 2 cut(s) 179, 182
BmgT120I GGNCC 3 cut(s) 4, 292, 301
BmiI GGNNCC 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 338, 589
BmuI ACTGGG 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 679
BpmI CTGGAG 3 cut(s) 172, 291, 627
BsaBI GATNNNNATC 2 cut(s) 403, 507
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 5 cut(s) 158, 210, 241, 483, 747
BsaXI ACNNNNNCTCC 6 cut(s) 37, 67, 113, 143, 264, 294
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 289, 310
Bse1I ACTGG 2 cut(s) 91, 283
Bse8I GATNNNNATC 2 cut(s) 403, 507
BseDI CCNNGG 5 cut(s) 158, 210, 241, 483, 747
BseGI GGATG 4 cut(s) 64, 353, 684, 757
BseJI GATNNNNATC 2 cut(s) 403, 507
BseLI CCNNNNNNNGG 3 cut(s) 230, 289, 310
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 91, 283
BseRI GAGGAG 2 cut(s) 45, 108
BseXI GCAGC 3 cut(s) 253, 712, 758
Bsh1236I CGCG 2 cut(s) 200, 457
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 2 cut(s) 314, 742
BslI CCNNNNNNNGG 3 cut(s) 230, 289, 310
BsmAI GTCTC 3 cut(s) 99, 190, 267
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 314, 742
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 237, 508, 736
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 5 cut(s) 198, 207, 225, 264, 320
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 2 cut(s) 200, 457
BspLI GGNNCC 1 cut(s) 302
BspMAI CTGCAG 1 cut(s) 609
BspPI GGATC 1 cut(s) 232
BsrI ACTGG 2 cut(s) 91, 283
BssECI CCNNGG 5 cut(s) 158, 210, 241, 483, 747
BssMI GATC 3 cut(s) 237, 508, 736
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 483, 747
Bst4CI ACNGT 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 2 cut(s) 158, 483
BstF5I GGATG 4 cut(s) 64, 353, 684, 757
BstFNI CGCG 2 cut(s) 200, 457
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 2 cut(s) 170, 457
BstKTI GATC 3 cut(s) 240, 511, 739
BstMAI GTCTC 3 cut(s) 99, 190, 267
BstMBI GATC 3 cut(s) 237, 508, 736
BstMWI GCNNNNNNNGC 2 cut(s) 206, 326
BstNSI RCATGY 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 605
BstUI CGCG 2 cut(s) 200, 457
BstV1I GCAGC 3 cut(s) 253, 712, 758
BstV2I GAAGAC 1 cut(s) 679
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 158, 483
BtsCI GGATG 4 cut(s) 64, 353, 684, 757
CfoI GCGC 2 cut(s) 170, 457
Cfr13I GGNCC 3 cut(s) 4, 292, 301
CviAII CATG 3 cut(s) 179, 484, 740
DdeI CTNAG 1 cut(s) 335
DpnI GATC 3 cut(s) 239, 510, 738
DpnII GATC 3 cut(s) 237, 508, 736
DriI GACNNNNNGTC 2 cut(s) 179, 182
Eam1105I GACNNNNNGTC 2 cut(s) 179, 182
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 483, 747
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 2 cut(s) 292, 301
Eco47III AGCGCT 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 292
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 483, 747
ErhI CCWWGG 2 cut(s) 483, 747
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 3 cut(s) 182, 487, 743
FaiI YATR 9 cut(s) 180, 485, 498, 522, 538, 543, 627, 711, 741
FaqI GGGAC 2 cut(s) 314, 742
FatI CATG 3 cut(s) 178, 483, 739
FauI CCCGC 1 cut(s) 232
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 267, 701, 772
FokI GGATG 4 cut(s) 51, 360, 691, 764
Fsp4HI GCNGC 3 cut(s) 267, 701, 772
FspBI CTAG 2 cut(s) 171, 573
GlaI GCGC 2 cut(s) 169, 456
GluI GCNGC 3 cut(s) 267, 701, 772
GsuI CTGGAG 3 cut(s) 172, 291, 627
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 170, 457
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 3 cut(s) 182, 487, 743
Hin6I GCGC 2 cut(s) 168, 455
HinP1I GCGC 2 cut(s) 168, 455
HinfI GANTC 4 cut(s) 275, 386, 404, 488
HphI GGTGA 4 cut(s) 99, 245, 253, 746
Hpy188I TCNGA 3 cut(s) 214, 254, 717
Hpy188III TCNNGA 5 cut(s) 189, 446, 591, 644, 789
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 69, 719
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 4 cut(s) 329, 578, 607, 774
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 326
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 3 cut(s) 182, 487, 743
HspAI GCGC 2 cut(s) 168, 455
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 3 cut(s) 237, 508, 736
LmnI GCTCC 1 cut(s) 748
Lsp1109I GCAGC 3 cut(s) 253, 712, 758
LweI GCATC 2 cut(s) 338, 589
MaeI CTAG 2 cut(s) 171, 573
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 470, 663
MalI GATC 3 cut(s) 239, 510, 738
MboI GATC 3 cut(s) 237, 508, 736
MboII GAAGA 2 cut(s) 553, 679
MflI RGATCY 1 cut(s) 237
MluCI AATT 4 cut(s) 148, 255, 423, 463
MlyI GAGTC 1 cut(s) 269
MseI TTAA 1 cut(s) 761
MspA1I CMGCKG 2 cut(s) 266, 410
MvnI CGCG 2 cut(s) 200, 457
MwoI GCNNNNNNNGC 2 cut(s) 206, 326
NcoI CCATGG 1 cut(s) 483
NdeII GATC 3 cut(s) 237, 508, 736
NlaIII CATG 3 cut(s) 182, 487, 743
NlaIV GGNNCC 1 cut(s) 302
NmeAIII GCCGAG 1 cut(s) 222
NspI RCATGY 1 cut(s) 182
PciI ACATGT 1 cut(s) 178
PfeI GAWTC 3 cut(s) 386, 404, 488
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 268, 702, 773
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PpuMI RGGWCCY 1 cut(s) 292
PscI ACATGT 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 3 cut(s) 4, 292, 301
PspPPI RGGWCCY 1 cut(s) 292
PstI CTGCAG 1 cut(s) 609
PsuI RGATCY 1 cut(s) 237
PsyI GACNNNGTC 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 761
SatI GCNGC 3 cut(s) 267, 701, 772
Sau3AI GATC 3 cut(s) 237, 508, 736
Sau96I GGNCC 3 cut(s) 4, 292, 301
SchI GAGTC 1 cut(s) 269
SfaNI GCATC 2 cut(s) 338, 589
SfcI CTRYAG 1 cut(s) 605
SinI GGWCC 2 cut(s) 292, 301
Sse9I AATT 4 cut(s) 148, 255, 423, 463
SsiI CCGC 5 cut(s) 198, 207, 225, 264, 320
SspMI CTAG 2 cut(s) 171, 573
StyI CCWWGG 2 cut(s) 483, 747
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 553
TasI AATT 4 cut(s) 148, 255, 423, 463
TfiI GAWTC 3 cut(s) 386, 404, 488
Tru1I TTAA 1 cut(s) 761
Tru9I TTAA 1 cut(s) 761
TseI GCWGC 3 cut(s) 266, 700, 771
TspGWI ACGGA 1 cut(s) 268
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 292, 301
XapI RAATTY 1 cut(s) 255
XceI RCATGY 1 cut(s) 182
XspI CTAG 2 cut(s) 171, 573
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.