RLG00000017689

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003579
Physical Location & Seq
Forward (+)
19915524 .. 19918096
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017689

Sequence Viewer

Length: 696 bp
ATGGCCCTAATCTCCACACAAACTCTAACCCTGAAGTCCCATCTTACCCTTTCTCTTCCTTCTCATCCAGCTTCCCAATCTTTCTCTCTCTCACCATCCACTCCTCACTCTCTCCACACCCCAAAATCAACAGCACGGTTTAGCGCTAGACGACTCGTCGTTTCCAGAGCCACCACATCCTCTGCTTTTGATTTCAGCCCCAGCATCGGTGAGGTCCTCGGTGAAGTTGGCATCTTCACCGCTGCAGGTGATCCCGTCCGTTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGATAGATTTGACTCAGCTGGTGTGAAACTAATCGCGGTTGGTGTTGGTACTCCTGATAAAGCTCGCATCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTTTATGCCGATCCTGATCGTAAGGCATATGATGTTTTGGGCTTATACTTTGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTCTCAAGAATTGAGGCCCTGCAGAAAGCTTTAAAGAACTATACGATTAAAGCCACTCCAGATGATATAAATAGTGTGTTACAACAGGGTGGAATGTTCGTCTTCAAAGGGAAGCAGTTATTGTATGCTCGGAAAGATGAAGGGACAGGTGATCATGCCCCATTAGATGATATCTTTGATGTTTGTTGCAAAGTTCCTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

232

Amino Acids

24.99

Weight (kDa)

9.04

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 94 - 210 1.8e-19 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccII CGCG 1 cut(s) 329
AciI CCGC 2 cut(s) 240, 329
AclWI GGATC 2 cut(s) 245, 401
AcuI CTGAAG 2 cut(s) 53, 258
AfaI GTAC 1 cut(s) 343
AfeI AGCGCT 1 cut(s) 145
AfiI CCNNNNNNNGG 2 cut(s) 206, 261
AgsI TTSAA 2 cut(s) 469, 595
AhdI GACNNNNNGTC 1 cut(s) 155
AluBI AGCT 6 cut(s) 71, 278, 311, 356, 476, 518
AluI AGCT 6 cut(s) 71, 278, 311, 356, 476, 518
AlwI GGATC 2 cut(s) 245, 401
Aor51HI AGCGCT 1 cut(s) 145
AoxI GGCC 2 cut(s) 3, 504
ApeKI GCWGC 1 cut(s) 242
ArsI GACNNNNNNTTYG 1 cut(s) 672
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 4, 214, 505
AsuHPI GGTGA 6 cut(s) 84, 221, 229, 233, 260, 650
AvaII GGWCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 583
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 48, 103
BclI TGATCA 1 cut(s) 640
BfaI CTAG 2 cut(s) 147, 477
BfmI CTRYAG 2 cut(s) 243, 509
BfoI RGCGCY 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 214
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 4, 214, 505
BmsI GCATC 3 cut(s) 213, 240, 369
BpiI GAAGAC 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 217, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 261
Bse8I GATNNNNATC 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 217, 387
BseGI GGATG 4 cut(s) 64, 95, 176, 360
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 206, 261
BseMII CTCAG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 5, 506
BslFI GGGAC 2 cut(s) 22, 646
BslI CCNNNNNNNGG 2 cut(s) 206, 261
BsmFI GGGAC 2 cut(s) 22, 646
BsnI GGCC 2 cut(s) 5, 506
Bsp143I GATC 4 cut(s) 250, 406, 412, 640
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 2 cut(s) 240, 329
BspANI GGCC 2 cut(s) 5, 506
BspCNI CTCAG 1 cut(s) 320
BspFNI CGCG 1 cut(s) 329
BspMAI CTGCAG 2 cut(s) 247, 513
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 2 cut(s) 245, 401
BssECI CCNNGG 2 cut(s) 217, 387
BssMI GATC 4 cut(s) 250, 406, 412, 640
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 138, 375
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 307
BstDSI CCRYGG 1 cut(s) 387
BstEII GGTNACC 1 cut(s) 375
BstF5I GGATG 4 cut(s) 64, 95, 176, 360
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 4 cut(s) 253, 409, 415, 643
BstMBI GATC 4 cut(s) 250, 406, 412, 640
BstPI GGTNACC 1 cut(s) 375
BstSFI CTRYAG 2 cut(s) 243, 509
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 583
BsuRI GGCC 2 cut(s) 5, 506
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 4 cut(s) 64, 95, 176, 360
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 4, 214, 505
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 388, 644
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 1 cut(s) 307
DpnI GATC 4 cut(s) 252, 408, 414, 642
DpnII GATC 4 cut(s) 250, 406, 412, 640
DraI TTTAAA 1 cut(s) 522
DriI GACNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 387
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 214
Eco47III AGCGCT 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 53, 258
Eco91I GGTNACC 1 cut(s) 375
EcoO109I RGGNCCY 2 cut(s) 214, 505
EcoO65I GGTNACC 1 cut(s) 375
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 2 cut(s) 391, 647
FaiI YATR 9 cut(s) 389, 402, 424, 426, 442, 531, 557, 615, 645
FaqI GGGAC 2 cut(s) 22, 646
FatI CATG 2 cut(s) 387, 643
FauNDI CATATG 1 cut(s) 424
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 4 cut(s) 51, 82, 163, 347
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 147, 477
GlaI GCGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 5, 506
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 391, 647
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 4 cut(s) 153, 287, 305, 392
HphI GGTGA 6 cut(s) 84, 221, 229, 233, 260, 650
Hpy188I TCNGA 1 cut(s) 621
Hpy188III TCNNGA 6 cut(s) 165, 347, 410, 495, 548, 693
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 69, 623
HpyCH4III ACNGT 2 cut(s) 138, 375
HpyCH4V TGCA 5 cut(s) 245, 368, 482, 511, 678
HpyF3I CTNAG 1 cut(s) 307
Hsp92II CATG 2 cut(s) 391, 647
HspAI GCGC 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 4 cut(s) 250, 406, 412, 640
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 3 cut(s) 213, 240, 369
MaeI CTAG 2 cut(s) 147, 477
MaeIII GTNAC 2 cut(s) 375, 567
MalI GATC 4 cut(s) 252, 408, 414, 642
MboI GATC 4 cut(s) 250, 406, 412, 640
MboII GAAGA 4 cut(s) 47, 226, 457, 583
MluCI AATT 1 cut(s) 498
MlyI GAGTC 2 cut(s) 147, 299
MnlI CCTC 5 cut(s) 114, 190, 205, 227, 496
MseI TTAA 2 cut(s) 521, 537
MspA1I CMGCKG 2 cut(s) 242, 311
MvnI CGCG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 387
NdeI CATATG 1 cut(s) 424
NdeII GATC 4 cut(s) 250, 406, 412, 640
NlaIII CATG 2 cut(s) 391, 647
PaqCI CACCTGC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 287, 392
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 2 cut(s) 147, 299
PpsI GAGTC 2 cut(s) 147, 299
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 4, 214, 505
PspPPI RGGWCCY 1 cut(s) 214
PstI CTGCAG 2 cut(s) 247, 513
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 521, 537
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 4 cut(s) 250, 406, 412, 640
Sau96I GGNCC 3 cut(s) 4, 214, 505
SchI GAGTC 2 cut(s) 147, 299
SfaNI GCATC 3 cut(s) 213, 240, 369
SfcI CTRYAG 2 cut(s) 243, 509
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 1 cut(s) 498
SsiI CCGC 2 cut(s) 240, 329
SspMI CTAG 2 cut(s) 147, 477
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 138, 375
TaqI TCGA 1 cut(s) 457
TasI AATT 1 cut(s) 498
TfiI GAWTC 2 cut(s) 287, 392
Tru1I TTAA 2 cut(s) 521, 537
Tru9I TTAA 2 cut(s) 521, 537
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 642
TspGWI ACGGA 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 2 cut(s) 147, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.